Wall clock time and date at job start Tue Mar 31 2020 19:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34222 * 117.00277 * 2 1 4 4 O 1.20835 * 119.99886 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00546 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47399 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.47010 * 180.02562 * 6 5 3 8 8 C 1.53002 * 109.47355 * 59.99985 * 7 6 5 9 9 C 1.52997 * 109.47290 * 299.99782 * 7 6 5 10 10 N 1.46507 * 109.47103 * 179.97438 * 7 6 5 11 11 C 1.34773 * 120.00266 * 180.02562 * 10 7 6 12 12 O 1.21282 * 119.99503 * 359.97438 * 11 10 7 13 13 C 1.50694 * 120.00092 * 180.02562 * 11 10 7 14 14 C 1.50707 * 109.47262 * 179.97438 * 13 11 10 15 15 C 1.37643 * 120.12639 * 265.30991 * 14 13 11 16 16 C 1.38615 * 120.24281 * 180.31829 * 15 14 13 17 17 C 1.38658 * 120.50051 * 359.66907 * 16 15 14 18 18 C 1.37593 * 120.25264 * 0.02562 * 17 16 15 19 19 C 1.40688 * 120.12508 * 84.99750 * 14 13 11 20 20 C 1.41401 * 120.24844 * 359.97438 * 19 14 13 21 21 H 1.07999 * 119.99289 * 334.28466 * 20 19 14 22 22 C 1.39937 * 120.00394 * 154.28925 * 20 19 14 23 23 N 1.30829 * 120.00181 * 334.60180 * 22 20 19 24 24 Si 1.86801 * 120.00083 * 154.60226 * 22 20 19 25 25 H 1.48505 * 109.47160 * 179.97438 * 24 22 20 26 26 H 1.48495 * 109.47100 * 300.00105 * 24 22 20 27 27 H 1.48502 * 109.47051 * 60.00179 * 24 22 20 28 28 H 1.08996 * 109.47529 * 299.99767 * 1 2 3 29 29 H 1.08992 * 109.47152 * 60.00353 * 1 2 3 30 30 H 1.09007 * 109.47376 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46996 * 60.00138 * 5 3 2 32 32 H 1.08998 * 109.46932 * 299.99856 * 5 3 2 33 33 H 1.08992 * 109.47153 * 59.99791 * 6 5 3 34 34 H 1.09003 * 109.46640 * 300.00213 * 6 5 3 35 35 H 1.08995 * 109.47176 * 179.97438 * 8 7 6 36 36 H 1.08999 * 109.46822 * 300.00220 * 8 7 6 37 37 H 1.09003 * 109.47082 * 59.99332 * 8 7 6 38 38 H 1.09003 * 109.46889 * 299.99900 * 9 7 6 39 39 H 1.08997 * 109.47131 * 60.00262 * 9 7 6 40 40 H 1.09004 * 109.47115 * 180.02562 * 9 7 6 41 41 H 0.97000 * 119.99705 * 0.02562 * 10 7 6 42 42 H 1.09001 * 109.46892 * 59.99768 * 13 11 10 43 43 H 1.08991 * 109.47294 * 299.99778 * 13 11 10 44 44 H 1.07998 * 119.87840 * 0.02562 * 15 14 13 45 45 H 1.07996 * 119.74749 * 179.68975 * 16 15 14 46 46 H 1.08000 * 119.87393 * 180.02562 * 17 16 15 47 47 H 1.07996 * 120.12941 * 180.02562 * 18 17 16 48 48 H 0.96998 * 119.99709 * 354.17607 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7421 0.0011 7 6 5.5280 2.8221 0.0011 8 6 6.0750 2.1290 -1.2485 9 6 6.0751 2.1281 1.2500 10 7 5.9434 4.2270 0.0009 11 6 7.2537 4.5424 0.0003 12 8 8.0890 3.6630 0.0004 13 6 7.6810 5.9875 0.0008 14 6 9.1860 6.0664 0.0006 15 6 9.8709 6.1994 1.1871 16 6 11.2548 6.2788 1.1892 17 6 11.9650 6.2186 -0.0002 18 6 11.3014 6.0796 -1.1975 19 6 9.8965 5.9978 -1.2117 20 6 9.2039 5.8541 -2.4361 21 1 8.2274 5.3930 -2.4531 22 6 9.7837 6.3091 -3.6256 23 7 10.6721 7.2691 -3.5950 24 14 9.2894 5.5458 -5.2573 25 1 10.0417 6.2000 -6.3580 26 1 9.6004 4.0939 -5.2391 27 1 7.8325 5.7373 -5.4722 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 3.9564 0.7806 -0.8892 32 1 3.9556 0.7809 0.8908 33 1 3.6100 3.2359 0.8910 34 1 3.6106 3.2363 -0.8889 35 1 7.1634 2.1864 -1.2487 36 1 5.7659 1.0837 -1.2488 37 1 5.6852 2.6234 -2.1383 38 1 5.6854 2.6220 2.1402 39 1 5.7661 1.0829 1.2497 40 1 7.1636 2.1856 1.2502 41 1 5.2753 4.9303 0.0013 42 1 7.2917 6.4811 0.8912 43 1 7.2908 6.4820 -0.8887 44 1 9.3279 6.2467 2.1194 45 1 11.7838 6.3881 2.1244 46 1 13.0431 6.2811 0.0133 47 1 11.8566 6.0325 -2.1226 48 1 10.8670 7.7230 -2.7602 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777397168.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:34 Heat of formation + Delta-G solvation = -142.399926 kcal Electronic energy + Delta-G solvation = -28819.197206 eV Core-core repulsion = 24837.420370 eV Total energy + Delta-G solvation = -3981.776836 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.62359 -41.06104 -39.57745 -38.05156 -37.31394 -35.71566 -34.07282 -33.34819 -31.26991 -31.06096 -28.69571 -28.37056 -28.22217 -26.80056 -26.04204 -22.91362 -22.78703 -21.82697 -20.87936 -20.26411 -19.57927 -18.86431 -17.83708 -17.66347 -17.61271 -16.88569 -16.58833 -16.41247 -15.85465 -15.77545 -15.59413 -15.24214 -14.89523 -14.54096 -14.45621 -14.23511 -14.06587 -13.84707 -13.74095 -13.53272 -13.38409 -13.09099 -12.94160 -12.92337 -12.71842 -12.60603 -12.46321 -12.23068 -12.17435 -11.98626 -11.88685 -11.85766 -11.73575 -11.51261 -11.45981 -11.19302 -10.82078 -10.42509 -9.93785 -9.41951 -9.39905 -9.03028 -6.36611 0.93940 1.00823 1.17166 1.47387 1.62879 1.72679 1.76338 1.90987 2.32170 2.40870 2.74047 3.55983 3.63852 3.85899 3.88817 4.07848 4.16960 4.22598 4.24562 4.31339 4.32475 4.34434 4.41809 4.51011 4.57006 4.60753 4.72549 4.74812 4.80382 4.84831 4.91868 4.93313 5.01225 5.02260 5.10234 5.12369 5.35017 5.36146 5.47651 5.48382 5.52703 5.75942 5.82598 5.86870 6.01596 6.07751 6.32281 6.47953 6.71129 6.77319 6.89997 7.05028 7.53905 8.10631 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014360 B = 0.002868 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.356680 B = 9760.591489 C =11117.686729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.463 3.537 4 O -0.541 6.541 5 C -0.111 4.111 6 C -0.098 4.098 7 C 0.177 3.823 8 C -0.168 4.168 9 C -0.163 4.163 10 N -0.722 5.722 11 C 0.521 3.479 12 O -0.558 6.558 13 C -0.073 4.073 14 C -0.186 4.186 15 C -0.080 4.080 16 C -0.251 4.251 17 C -0.098 4.098 18 C -0.245 4.245 19 C 0.086 3.914 20 C -0.537 4.537 21 H 0.069 0.931 22 C 0.004 3.996 23 N -0.822 5.822 24 Si 1.106 2.894 25 H -0.271 1.271 26 H -0.273 1.273 27 H -0.254 1.254 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.132 0.868 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.043 0.957 36 H 0.091 0.909 37 H 0.052 0.948 38 H 0.061 0.939 39 H 0.089 0.911 40 H 0.045 0.955 41 H 0.409 0.591 42 H 0.108 0.892 43 H 0.090 0.910 44 H 0.117 0.883 45 H 0.117 0.883 46 H 0.108 0.892 47 H 0.082 0.918 48 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.152 -11.961 6.384 23.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.308 3.692 4 O -0.431 6.431 5 C -0.148 4.148 6 C -0.136 4.136 7 C 0.091 3.909 8 C -0.226 4.226 9 C -0.221 4.221 10 N -0.376 5.376 11 C 0.309 3.691 12 O -0.435 6.435 13 C -0.113 4.113 14 C -0.187 4.187 15 C -0.099 4.099 16 C -0.270 4.270 17 C -0.116 4.116 18 C -0.265 4.265 19 C 0.084 3.916 20 C -0.565 4.565 21 H 0.087 0.913 22 C -0.212 4.212 23 N -0.445 5.445 24 Si 0.924 3.076 25 H -0.196 1.196 26 H -0.199 1.199 27 H -0.178 1.178 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.150 0.850 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.110 0.890 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.108 0.892 40 H 0.064 0.936 41 H 0.245 0.755 42 H 0.126 0.874 43 H 0.108 0.892 44 H 0.135 0.865 45 H 0.135 0.865 46 H 0.126 0.874 47 H 0.100 0.900 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.439 -12.231 4.766 22.634 hybrid contribution -0.225 0.698 1.551 1.716 sum -18.665 -11.533 6.317 22.831 Atomic orbital electron populations 1.23521 0.75026 1.05595 1.02423 1.86505 1.24836 1.33047 1.83737 1.24177 0.92875 0.81022 0.71089 1.90676 1.68162 1.37357 1.46866 1.21561 0.85982 0.98941 1.08358 1.21493 0.91964 0.95791 1.04336 1.20271 0.93692 0.81095 0.95811 1.22305 1.01821 1.01610 0.96890 1.22261 1.01803 1.01521 0.96518 1.46076 1.06650 1.08531 1.76358 1.20844 0.82237 0.91523 0.74502 1.90615 1.52854 1.50736 1.49337 1.20288 0.93561 0.93255 1.04150 1.19498 0.93961 1.12116 0.93150 1.20782 0.94348 0.98234 0.96496 1.20700 0.94378 1.15051 0.96902 1.20878 0.98537 0.99098 0.93074 1.21139 0.94940 1.13735 0.96671 1.17768 0.91727 0.88609 0.93525 1.20511 1.05483 1.37464 0.93071 0.91295 1.28197 0.92024 0.93457 1.07543 1.70554 1.26232 1.15240 1.32504 0.83151 0.77936 0.76055 0.70472 1.19578 1.19864 1.17780 0.91999 0.92164 0.85224 0.85417 0.84982 0.90010 0.90665 0.93798 0.89046 0.92896 0.92010 0.89191 0.93612 0.75467 0.87385 0.89151 0.86467 0.86474 0.87431 0.89982 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.36 -5.62 10.56 -51.34 -0.54 -6.16 16 3 C 0.46 8.10 7.96 71.23 0.57 8.67 16 4 O -0.54 -12.80 15.73 21.94 0.35 -12.46 16 5 C -0.11 -1.45 5.11 29.85 0.15 -1.30 16 6 C -0.10 -1.65 3.67 30.59 0.11 -1.54 16 7 C 0.18 3.99 0.83 3.60 0.00 4.00 16 8 C -0.17 -4.31 8.05 71.98 0.58 -3.73 16 9 C -0.16 -3.68 8.05 71.98 0.58 -3.10 16 10 N -0.72 -19.26 5.11 -422.93 -2.16 -21.42 16 11 C 0.52 19.21 6.88 87.66 0.60 19.82 16 12 O -0.56 -25.36 12.24 -3.04 -0.04 -25.40 16 13 C -0.07 -2.77 5.18 29.10 0.15 -2.62 16 14 C -0.19 -8.84 4.43 -19.40 -0.09 -8.92 16 15 C -0.08 -3.58 9.66 22.22 0.21 -3.36 16 16 C -0.25 -11.29 10.05 22.46 0.23 -11.06 16 17 C -0.10 -4.75 10.02 22.22 0.22 -4.52 16 18 C -0.25 -13.45 7.95 22.73 0.18 -13.27 16 19 C 0.09 4.70 5.30 -21.29 -0.11 4.58 16 20 C -0.54 -29.03 8.08 23.46 0.19 -28.84 16 21 H 0.07 3.65 6.73 -2.91 -0.02 3.63 16 22 C 0.00 0.20 4.94 85.25 0.42 0.62 16 23 N -0.82 -45.47 12.31 21.82 0.27 -45.21 16 24 Si 1.11 44.99 30.00 68.60 2.06 47.04 16 25 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 26 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 27 H -0.25 -9.28 7.11 99.48 0.71 -8.58 16 28 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 29 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 30 H 0.13 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.13 1.33 6.43 -2.39 -0.02 1.32 16 32 H 0.13 1.23 6.43 -2.39 -0.02 1.21 16 33 H 0.08 1.36 8.10 -2.39 -0.02 1.34 16 34 H 0.07 1.37 8.10 -2.39 -0.02 1.35 16 35 H 0.04 1.54 6.16 -2.39 -0.01 1.52 16 36 H 0.09 1.68 6.43 -2.39 -0.02 1.66 16 37 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.09 1.44 6.43 -2.39 -0.02 1.43 16 40 H 0.04 1.43 6.17 -2.38 -0.01 1.41 16 41 H 0.41 8.56 8.47 -92.71 -0.79 7.77 16 42 H 0.11 3.28 8.05 -2.39 -0.02 3.27 16 43 H 0.09 3.50 7.06 -2.39 -0.02 3.48 16 44 H 0.12 4.39 8.06 -2.91 -0.02 4.36 16 45 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 46 H 0.11 4.64 8.06 -2.91 -0.02 4.61 16 47 H 0.08 4.74 6.49 -2.91 -0.02 4.72 16 48 H 0.28 16.31 6.68 -92.71 -0.62 15.69 16 Total: -1.00 -73.34 386.60 5.48 -67.86 By element: Atomic # 1 Polarization: 38.47 SS G_CDS: 0.34 Total: 38.82 kcal Atomic # 6 Polarization: -48.28 SS G_CDS: 5.20 Total: -43.08 kcal Atomic # 7 Polarization: -64.74 SS G_CDS: -1.89 Total: -66.63 kcal Atomic # 8 Polarization: -43.78 SS G_CDS: -0.23 Total: -44.01 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.06 Total: 47.04 kcal Total: -73.34 5.48 -67.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777397168.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.542 kcal (2) G-P(sol) polarization free energy of solvation -73.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds