Wall clock time and date at job start Tue Mar 31 2020 18:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.50451 * 2 1 4 4 O 1.43752 * 109.63212 * 239.68588 * 2 1 3 5 5 C 1.44986 * 104.92917 * 264.30040 * 4 2 1 6 6 C 1.54918 * 101.62569 * 324.12818 * 5 4 2 7 7 H 1.09005 * 110.69510 * 276.85405 * 6 5 4 8 8 C 1.53000 * 110.69760 * 153.82098 * 6 5 4 9 9 N 1.46494 * 109.47486 * 182.37655 * 8 6 5 10 10 C 1.34772 * 120.00337 * 179.97438 * 9 8 6 11 11 O 1.21277 * 119.99818 * 0.02562 * 10 9 8 12 12 C 1.50702 * 120.00350 * 179.97438 * 10 9 8 13 13 C 1.52991 * 109.47343 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.47056 * 305.95202 * 13 12 10 15 15 C 1.50698 * 109.47295 * 65.95132 * 13 12 10 16 16 H 1.08003 * 120.00241 * 28.08680 * 15 13 12 17 17 C 1.37877 * 120.00025 * 208.08752 * 15 13 12 18 18 N 1.31513 * 120.00197 * 353.51121 * 17 15 13 19 19 Si 1.86800 * 120.00095 * 173.51237 * 17 15 13 20 20 H 1.48504 * 109.47034 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47239 * 120.00033 * 19 17 15 22 22 H 1.48494 * 109.47219 * 239.99991 * 19 17 15 23 23 C 1.50705 * 109.47290 * 185.95402 * 13 12 10 24 24 C 1.38236 * 119.99734 * 294.77184 * 23 13 12 25 25 C 1.38237 * 119.99903 * 179.78587 * 24 23 13 26 26 C 1.38230 * 119.99360 * 0.46579 * 25 24 23 27 27 C 1.38231 * 120.00926 * 359.76597 * 26 25 24 28 28 C 1.38233 * 119.99873 * 115.04364 * 23 13 12 29 29 O 1.43363 * 109.63478 * 120.31680 * 2 1 3 30 30 H 1.09001 * 109.47404 * 299.68000 * 1 2 3 31 31 H 1.09003 * 109.47477 * 59.68232 * 1 2 3 32 32 H 1.09006 * 109.47053 * 179.67567 * 1 2 3 33 33 H 1.08998 * 109.46789 * 180.31570 * 3 2 1 34 34 H 1.08998 * 109.47217 * 300.32532 * 3 2 1 35 35 H 1.09000 * 109.47110 * 60.31996 * 3 2 1 36 36 H 1.08998 * 111.14436 * 205.99901 * 5 4 2 37 37 H 1.08996 * 110.90580 * 82.14751 * 5 4 2 38 38 H 1.08997 * 109.46777 * 62.37342 * 8 6 5 39 39 H 1.09000 * 109.46701 * 302.37823 * 8 6 5 40 40 H 0.97003 * 119.99548 * 359.97438 * 9 8 6 41 41 H 1.08998 * 109.46845 * 60.00110 * 12 10 9 42 42 H 1.09001 * 109.46982 * 300.00567 * 12 10 9 43 43 H 0.97006 * 120.00019 * 1.67695 * 18 17 15 44 44 H 1.08008 * 119.99896 * 359.97438 * 24 23 13 45 45 H 1.07993 * 119.99903 * 180.24875 * 25 24 23 46 46 H 1.08010 * 119.99780 * 179.78941 * 26 25 24 47 47 H 1.07997 * 120.00647 * 180.02562 * 27 26 25 48 48 H 1.07993 * 120.00139 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0408 1.4422 0.0000 4 8 2.0130 -0.6834 -1.1688 5 6 2.2695 -2.0408 -0.7286 6 6 2.7885 -1.8087 0.7125 7 1 3.8512 -1.5660 0.7048 8 6 2.5224 -3.0355 1.5872 9 7 2.9715 -2.7665 2.9554 10 6 2.8358 -3.7110 3.9072 11 8 2.3423 -4.7838 3.6309 12 6 3.2983 -3.4344 5.3146 13 6 3.0321 -4.6611 6.1892 14 1 1.9820 -4.9428 6.1102 15 6 3.8954 -5.8058 5.7253 16 1 4.8424 -5.6080 5.2451 17 6 3.4764 -7.1058 5.9138 18 7 2.3880 -7.3516 6.6098 19 14 4.4547 -8.5181 5.1804 20 1 5.6290 -7.9792 4.4483 21 1 4.9196 -9.4158 6.2683 22 1 3.5938 -9.2821 4.2423 23 6 3.3581 -4.3354 7.6241 24 6 4.6612 -4.0547 7.9901 25 6 4.9597 -3.7516 9.3054 26 6 3.9565 -3.7387 10.2563 27 6 2.6541 -4.0241 9.8913 28 6 2.3550 -4.3229 8.5751 29 8 2.0117 -0.6816 1.1656 30 1 -0.3634 0.5088 0.8928 31 1 -0.3634 0.5188 -0.8871 32 1 -0.3633 -1.0277 -0.0058 33 1 3.1308 1.4416 -0.0057 34 1 1.6731 1.9580 -0.8870 35 1 1.6825 1.9546 0.8928 36 1 3.0313 -2.5169 -1.3458 37 1 1.3512 -2.6279 -0.7227 38 1 3.0666 -3.8913 1.1878 39 1 1.4545 -3.2538 1.5916 40 1 3.3665 -1.9085 3.1763 41 1 2.7548 -2.5782 5.7140 42 1 4.3663 -3.2168 5.3099 43 1 1.8665 -6.6172 6.9701 44 1 5.4457 -4.0692 7.2479 45 1 5.9771 -3.5284 9.5907 46 1 4.1901 -3.5052 11.2847 47 1 1.8703 -4.0135 10.6341 48 1 1.3376 -4.5461 8.2898 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793650854.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:41 Heat of formation + Delta-G solvation = -112.705756 kcal Electronic energy + Delta-G solvation = -28727.876183 eV Core-core repulsion = 24747.386983 eV Total energy + Delta-G solvation = -3980.489200 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.93442 -39.13210 -38.26441 -35.62703 -34.70327 -34.10950 -32.87280 -31.33551 -30.10557 -29.97458 -28.75087 -27.74226 -26.02354 -24.55213 -22.87920 -22.04124 -21.65234 -21.44247 -20.23903 -19.44682 -17.81408 -17.06972 -16.64575 -16.33250 -16.02680 -15.60819 -15.33386 -15.04036 -14.48492 -14.23962 -14.15618 -13.93353 -13.71028 -13.63838 -13.14713 -13.03223 -12.78542 -12.71789 -12.56453 -12.46303 -12.45114 -12.31271 -12.09607 -11.94447 -11.84875 -11.55216 -11.40762 -10.89171 -10.69578 -10.47228 -10.41514 -10.13206 -10.04628 -9.93171 -9.67483 -9.05486 -8.67664 -8.58320 -8.25983 -8.12698 -7.62238 -6.22863 -3.89933 2.20283 2.25956 3.00241 3.46307 3.47902 3.50822 3.56832 3.66841 3.67198 4.33646 4.43611 4.51145 4.61424 4.66193 4.68298 4.71477 5.00346 5.16254 5.25692 5.26882 5.34126 5.40167 5.43427 5.57982 5.60057 5.60811 5.64572 5.74471 5.77321 5.81397 5.86654 5.89594 6.02374 6.10132 6.18548 6.32940 6.43674 6.69593 6.78364 6.80314 6.85730 6.94227 7.21846 7.23800 7.39463 7.73924 7.87094 8.01699 8.24387 8.53042 8.97278 9.01262 9.79380 11.17908 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012460 B = 0.002941 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.734637 B = 9516.848180 C =11033.535468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.249 3.751 3 C -0.153 4.153 4 O -0.374 6.374 5 C 0.025 3.975 6 C 0.041 3.959 7 H 0.093 0.907 8 C 0.127 3.873 9 N -0.744 5.744 10 C 0.514 3.486 11 O -0.501 6.501 12 C -0.116 4.116 13 C 0.072 3.928 14 H 0.050 0.950 15 C -0.568 4.568 16 H 0.046 0.954 17 C 0.031 3.969 18 N -0.907 5.907 19 Si 1.069 2.931 20 H -0.292 1.292 21 H -0.291 1.291 22 H -0.288 1.288 23 C -0.031 4.031 24 C -0.107 4.107 25 C -0.130 4.130 26 C -0.153 4.153 27 C -0.125 4.125 28 C -0.130 4.130 29 O -0.369 6.369 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.113 0.887 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.397 0.603 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.271 0.729 44 H 0.115 0.885 45 H 0.107 0.893 46 H 0.106 0.894 47 H 0.107 0.893 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.322 16.334 -10.139 19.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.172 3.828 3 C -0.211 4.211 4 O -0.294 6.294 5 C -0.052 4.052 6 C -0.017 4.017 7 H 0.110 0.890 8 C 0.002 3.998 9 N -0.400 5.400 10 C 0.301 3.699 11 O -0.373 6.373 12 C -0.156 4.156 13 C 0.053 3.947 14 H 0.068 0.932 15 C -0.605 4.605 16 H 0.064 0.936 17 C -0.175 4.175 18 N -0.542 5.542 19 Si 0.899 3.101 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.214 1.214 23 C -0.032 4.032 24 C -0.125 4.125 25 C -0.148 4.148 26 C -0.171 4.171 27 C -0.143 4.143 28 C -0.148 4.148 29 O -0.290 6.290 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.131 0.869 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.230 0.770 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.082 0.918 44 H 0.133 0.867 45 H 0.125 0.875 46 H 0.124 0.876 47 H 0.125 0.875 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.022 14.003 -10.462 17.479 hybrid contribution 0.195 1.858 0.246 1.884 sum 0.173 15.861 -10.216 18.867 Atomic orbital electron populations 1.22378 0.93812 1.03476 1.03237 1.23397 0.93044 0.91442 0.74908 1.22067 1.02447 0.93369 1.03182 1.89270 1.86000 1.21966 1.32189 1.24363 1.01964 0.84936 0.93908 1.24056 0.96901 0.87048 0.93695 0.88971 1.21271 1.01129 0.94596 0.82756 1.46030 1.66467 1.18639 1.08857 1.20872 0.78406 0.83479 0.87123 1.90745 1.41485 1.23277 1.81754 1.21661 1.01409 1.00662 0.91884 1.17868 0.99317 0.91878 0.85633 0.93215 1.21575 1.05791 0.91514 1.41655 0.93595 1.25584 0.97450 0.99705 0.94726 1.70697 1.15724 1.36082 1.31720 0.83545 0.75069 0.75419 0.76047 1.21783 1.21763 1.21426 1.20837 0.92514 0.91348 0.98518 1.20924 0.96711 0.99573 0.95304 1.21011 0.98204 1.01758 0.93856 1.20821 0.93499 1.04314 0.98447 1.20964 0.96189 1.01048 0.96091 1.21071 0.99160 1.01450 0.93118 1.88959 1.69418 1.41409 1.29218 0.90620 0.90744 0.91725 0.91460 0.90803 0.90387 0.86879 0.90090 0.90100 0.91139 0.76978 0.91600 0.90259 0.91778 0.86696 0.87455 0.87598 0.87467 0.87180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 9.20 37.16 0.34 -1.17 16 2 C 0.25 2.48 1.47 -26.73 -0.04 2.44 16 3 C -0.15 -1.25 9.24 37.16 0.34 -0.90 16 4 O -0.37 -3.92 11.01 -59.04 -0.65 -4.57 16 5 C 0.03 0.22 7.39 38.17 0.28 0.51 16 6 C 0.04 0.42 3.73 -25.72 -0.10 0.32 16 7 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 8 C 0.13 1.65 5.43 -4.04 -0.02 1.62 16 9 N -0.74 -11.11 5.51 -60.30 -0.33 -11.44 16 10 C 0.51 10.24 7.58 -10.99 -0.08 10.16 16 11 O -0.50 -12.43 15.02 5.56 0.08 -12.35 16 12 C -0.12 -2.26 4.95 -27.89 -0.14 -2.40 16 13 C 0.07 1.73 1.26 -92.93 -0.12 1.62 16 14 H 0.05 1.35 6.39 -51.93 -0.33 1.02 16 15 C -0.57 -15.44 6.36 -34.44 -0.22 -15.66 16 16 H 0.05 1.26 7.82 -52.48 -0.41 0.85 16 17 C 0.03 0.89 5.45 -17.82 -0.10 0.79 16 18 N -0.91 -27.74 13.61 55.43 0.75 -26.98 16 19 Si 1.07 26.42 29.91 -169.99 -5.08 21.33 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 C -0.03 -0.70 4.66 -104.62 -0.49 -1.19 16 24 C -0.11 -2.20 8.89 -39.58 -0.35 -2.55 16 25 C -0.13 -2.36 10.05 -39.58 -0.40 -2.75 16 26 C -0.15 -2.67 10.05 -39.59 -0.40 -3.07 16 27 C -0.12 -2.31 10.05 -39.58 -0.40 -2.71 16 28 C -0.13 -2.74 9.42 -39.58 -0.37 -3.11 16 29 O -0.37 -4.22 10.53 -59.04 -0.62 -4.85 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.69 8.04 -51.93 -0.42 0.27 16 38 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.40 4.96 8.47 -40.82 -0.35 4.61 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.08 1.44 7.93 -51.93 -0.41 1.03 16 43 H 0.27 8.19 6.42 -40.82 -0.26 7.93 16 44 H 0.12 2.30 7.83 -52.48 -0.41 1.88 16 45 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 46 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 47 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 48 H 0.11 2.29 7.95 -52.49 -0.42 1.87 16 LS Contribution 396.68 15.07 5.98 5.98 Total: -1.00 -34.22 396.68 -9.85 -44.06 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -7.72 Total: 6.87 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -2.25 Total: -18.05 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.42 Total: -38.43 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -1.19 Total: -21.76 kcal Atomic # 14 Polarization: 26.42 SS G_CDS: -5.08 Total: 21.33 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.22 -9.85 -44.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793650854.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.642 kcal (2) G-P(sol) polarization free energy of solvation -34.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds