Wall clock time and date at job start Tue Mar 31 2020 18:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.50451 * 2 1 4 4 O 1.43752 * 109.63212 * 239.68588 * 2 1 3 5 5 C 1.44986 * 104.92917 * 264.30040 * 4 2 1 6 6 C 1.54918 * 101.62569 * 324.12818 * 5 4 2 7 7 H 1.09005 * 110.69510 * 276.85405 * 6 5 4 8 8 C 1.53000 * 110.69760 * 153.82098 * 6 5 4 9 9 N 1.46494 * 109.47486 * 182.37655 * 8 6 5 10 10 C 1.34772 * 120.00337 * 179.97438 * 9 8 6 11 11 O 1.21277 * 119.99818 * 0.02562 * 10 9 8 12 12 C 1.50702 * 120.00350 * 179.97438 * 10 9 8 13 13 C 1.52991 * 109.47343 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.47056 * 305.95202 * 13 12 10 15 15 C 1.50698 * 109.47295 * 65.95132 * 13 12 10 16 16 H 1.08003 * 120.00241 * 28.08680 * 15 13 12 17 17 C 1.37877 * 120.00025 * 208.08752 * 15 13 12 18 18 N 1.31513 * 120.00197 * 353.51121 * 17 15 13 19 19 Si 1.86800 * 120.00095 * 173.51237 * 17 15 13 20 20 H 1.48504 * 109.47034 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47239 * 120.00033 * 19 17 15 22 22 H 1.48494 * 109.47219 * 239.99991 * 19 17 15 23 23 C 1.50705 * 109.47290 * 185.95402 * 13 12 10 24 24 C 1.38236 * 119.99734 * 294.77184 * 23 13 12 25 25 C 1.38237 * 119.99903 * 179.78587 * 24 23 13 26 26 C 1.38230 * 119.99360 * 0.46579 * 25 24 23 27 27 C 1.38231 * 120.00926 * 359.76597 * 26 25 24 28 28 C 1.38233 * 119.99873 * 115.04364 * 23 13 12 29 29 O 1.43363 * 109.63478 * 120.31680 * 2 1 3 30 30 H 1.09001 * 109.47404 * 299.68000 * 1 2 3 31 31 H 1.09003 * 109.47477 * 59.68232 * 1 2 3 32 32 H 1.09006 * 109.47053 * 179.67567 * 1 2 3 33 33 H 1.08998 * 109.46789 * 180.31570 * 3 2 1 34 34 H 1.08998 * 109.47217 * 300.32532 * 3 2 1 35 35 H 1.09000 * 109.47110 * 60.31996 * 3 2 1 36 36 H 1.08998 * 111.14436 * 205.99901 * 5 4 2 37 37 H 1.08996 * 110.90580 * 82.14751 * 5 4 2 38 38 H 1.08997 * 109.46777 * 62.37342 * 8 6 5 39 39 H 1.09000 * 109.46701 * 302.37823 * 8 6 5 40 40 H 0.97003 * 119.99548 * 359.97438 * 9 8 6 41 41 H 1.08998 * 109.46845 * 60.00110 * 12 10 9 42 42 H 1.09001 * 109.46982 * 300.00567 * 12 10 9 43 43 H 0.97006 * 120.00019 * 1.67695 * 18 17 15 44 44 H 1.08008 * 119.99896 * 359.97438 * 24 23 13 45 45 H 1.07993 * 119.99903 * 180.24875 * 25 24 23 46 46 H 1.08010 * 119.99780 * 179.78941 * 26 25 24 47 47 H 1.07997 * 120.00647 * 180.02562 * 27 26 25 48 48 H 1.07993 * 120.00139 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0408 1.4422 0.0000 4 8 2.0130 -0.6834 -1.1688 5 6 2.2695 -2.0408 -0.7286 6 6 2.7885 -1.8087 0.7125 7 1 3.8512 -1.5660 0.7048 8 6 2.5224 -3.0355 1.5872 9 7 2.9715 -2.7665 2.9554 10 6 2.8358 -3.7110 3.9072 11 8 2.3423 -4.7838 3.6309 12 6 3.2983 -3.4344 5.3146 13 6 3.0321 -4.6611 6.1892 14 1 1.9820 -4.9428 6.1102 15 6 3.8954 -5.8058 5.7253 16 1 4.8424 -5.6080 5.2451 17 6 3.4764 -7.1058 5.9138 18 7 2.3880 -7.3516 6.6098 19 14 4.4547 -8.5181 5.1804 20 1 5.6290 -7.9792 4.4483 21 1 4.9196 -9.4158 6.2683 22 1 3.5938 -9.2821 4.2423 23 6 3.3581 -4.3354 7.6241 24 6 4.6612 -4.0547 7.9901 25 6 4.9597 -3.7516 9.3054 26 6 3.9565 -3.7387 10.2563 27 6 2.6541 -4.0241 9.8913 28 6 2.3550 -4.3229 8.5751 29 8 2.0117 -0.6816 1.1656 30 1 -0.3634 0.5088 0.8928 31 1 -0.3634 0.5188 -0.8871 32 1 -0.3633 -1.0277 -0.0058 33 1 3.1308 1.4416 -0.0057 34 1 1.6731 1.9580 -0.8870 35 1 1.6825 1.9546 0.8928 36 1 3.0313 -2.5169 -1.3458 37 1 1.3512 -2.6279 -0.7227 38 1 3.0666 -3.8913 1.1878 39 1 1.4545 -3.2538 1.5916 40 1 3.3665 -1.9085 3.1763 41 1 2.7548 -2.5782 5.7140 42 1 4.3663 -3.2168 5.3099 43 1 1.8665 -6.6172 6.9701 44 1 5.4457 -4.0692 7.2479 45 1 5.9771 -3.5284 9.5907 46 1 4.1901 -3.5052 11.2847 47 1 1.8703 -4.0135 10.6341 48 1 1.3376 -4.5461 8.2898 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793650854.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:40 Heat of formation + Delta-G solvation = -134.601592 kcal Electronic energy + Delta-G solvation = -28728.825658 eV Core-core repulsion = 24747.386983 eV Total energy + Delta-G solvation = -3981.438675 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.75145 -40.71158 -39.79327 -36.71723 -36.07017 -35.53701 -33.86629 -33.24026 -31.61062 -31.12964 -30.09218 -28.41128 -27.41050 -26.14038 -24.53516 -23.21607 -22.96985 -22.23301 -21.78497 -21.07138 -18.85475 -18.61481 -18.05607 -17.55004 -17.19603 -17.00249 -16.50449 -16.17131 -15.87265 -15.66577 -15.63218 -15.30314 -15.07110 -14.65795 -14.49340 -14.39127 -14.05667 -14.00040 -13.72286 -13.60859 -13.47495 -13.34462 -13.16725 -13.14016 -13.06521 -12.70776 -12.66019 -12.59506 -12.35707 -12.03516 -11.94930 -11.71681 -11.50158 -11.24828 -10.77864 -10.70234 -10.60537 -10.33727 -10.03317 -9.64144 -9.27044 -8.45034 -6.10385 0.67780 0.73915 1.48736 1.60239 1.72142 1.86945 2.14680 2.34026 2.62026 2.87907 3.10791 3.38441 3.48340 3.59996 3.77785 3.92013 3.94762 4.09970 4.13420 4.27786 4.28295 4.30388 4.34622 4.44300 4.48701 4.49740 4.59942 4.63327 4.67045 4.74485 4.75201 4.83207 4.84732 4.87358 4.94074 5.09867 5.12224 5.21427 5.23433 5.40760 5.42788 5.51365 5.74552 5.82373 5.95373 6.05498 6.24494 6.31416 6.40318 6.66778 6.78803 7.48243 7.65598 8.95882 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012460 B = 0.002941 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.734637 B = 9516.848180 C =11033.535468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.239 3.761 3 C -0.151 4.151 4 O -0.383 6.383 5 C 0.025 3.975 6 C 0.049 3.951 7 H 0.109 0.891 8 C 0.126 3.874 9 N -0.723 5.723 10 C 0.513 3.487 11 O -0.560 6.560 12 C -0.111 4.111 13 C 0.074 3.926 14 H 0.004 0.996 15 C -0.557 4.557 16 H 0.041 0.959 17 C -0.026 4.026 18 N -0.943 5.943 19 Si 1.105 2.895 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.292 1.292 23 C -0.056 4.056 24 C -0.123 4.123 25 C -0.125 4.125 26 C -0.145 4.145 27 C -0.126 4.126 28 C -0.154 4.154 29 O -0.386 6.386 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.137 0.863 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.055 0.945 40 H 0.412 0.588 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.259 0.741 44 H 0.115 0.885 45 H 0.143 0.857 46 H 0.147 0.853 47 H 0.135 0.865 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.337 18.418 -9.764 20.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.163 3.837 3 C -0.208 4.208 4 O -0.303 6.303 5 C -0.052 4.052 6 C -0.009 4.009 7 H 0.127 0.873 8 C 0.002 3.998 9 N -0.378 5.378 10 C 0.300 3.700 11 O -0.437 6.437 12 C -0.151 4.151 13 C 0.055 3.945 14 H 0.023 0.977 15 C -0.595 4.595 16 H 0.059 0.941 17 C -0.225 4.225 18 N -0.582 5.582 19 Si 0.930 3.070 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.219 1.219 23 C -0.056 4.056 24 C -0.141 4.141 25 C -0.142 4.142 26 C -0.162 4.162 27 C -0.144 4.144 28 C -0.172 4.172 29 O -0.308 6.308 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.155 0.845 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.248 0.752 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.069 0.931 44 H 0.133 0.867 45 H 0.161 0.839 46 H 0.165 0.835 47 H 0.152 0.848 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.024 16.165 -10.108 19.172 hybrid contribution -0.455 1.357 0.154 1.440 sum 1.569 17.522 -9.953 20.213 Atomic orbital electron populations 1.22395 0.93349 1.03076 1.04068 1.23664 0.93559 0.92140 0.74352 1.22072 1.02371 0.92251 1.04095 1.89263 1.86080 1.22522 1.32482 1.24480 1.02747 0.84609 0.93323 1.24000 0.97676 0.85579 0.93623 0.87324 1.21363 1.00145 0.96387 0.81904 1.45786 1.64857 1.18142 1.08981 1.20957 0.77706 0.83320 0.87972 1.90726 1.44427 1.25856 1.82666 1.21565 1.02807 0.99496 0.91230 1.17694 0.95952 0.92811 0.88069 0.97731 1.21826 1.05327 0.92408 1.39902 0.94113 1.26767 0.97897 1.02708 0.95087 1.70792 1.17317 1.35606 1.34448 0.83089 0.74658 0.73471 0.75757 1.19617 1.20907 1.21866 1.20632 0.93915 0.93771 0.97305 1.21019 0.95667 1.00478 0.96896 1.21412 1.00234 0.99951 0.92643 1.21309 0.92513 1.02122 1.00289 1.21299 0.97923 0.99897 0.95248 1.21130 0.98485 1.02947 0.94633 1.88936 1.69746 1.41739 1.30365 0.90361 0.89351 0.92756 0.91569 0.89589 0.89793 0.84485 0.90081 0.90035 0.92663 0.75168 0.89278 0.88433 0.93085 0.86704 0.83882 0.83546 0.84754 0.88749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 9.20 71.98 0.66 -2.20 16 2 C 0.24 4.43 1.47 30.60 0.05 4.48 16 3 C -0.15 -2.17 9.24 71.98 0.66 -1.51 16 4 O -0.38 -7.39 11.01 -126.22 -1.39 -8.78 16 5 C 0.02 0.41 7.39 72.64 0.54 0.94 16 6 C 0.05 0.93 3.73 31.25 0.12 1.05 16 7 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 8 C 0.13 3.24 5.43 86.38 0.47 3.71 16 9 N -0.72 -21.29 5.51 -463.09 -2.55 -23.85 16 10 C 0.51 20.86 7.58 87.66 0.66 21.53 16 11 O -0.56 -29.12 15.02 -3.02 -0.05 -29.16 16 12 C -0.11 -4.38 4.95 29.85 0.15 -4.23 16 13 C 0.07 3.69 1.26 -12.29 -0.02 3.68 16 14 H 0.00 0.26 6.39 -2.38 -0.02 0.25 16 15 C -0.56 -31.13 6.36 25.60 0.16 -30.97 16 16 H 0.04 2.26 7.82 -2.91 -0.02 2.23 16 17 C -0.03 -1.57 5.45 84.65 0.46 -1.10 16 18 N -0.94 -60.44 13.61 21.45 0.29 -60.15 16 19 Si 1.11 54.23 29.91 68.60 2.05 56.28 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 22 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 23 C -0.06 -2.52 4.66 -19.86 -0.09 -2.61 16 24 C -0.12 -4.89 8.89 22.27 0.20 -4.69 16 25 C -0.12 -4.10 10.05 22.27 0.22 -3.88 16 26 C -0.14 -4.52 10.05 22.27 0.22 -4.29 16 27 C -0.13 -4.43 10.05 22.27 0.22 -4.21 16 28 C -0.15 -6.61 9.42 22.27 0.21 -6.40 16 29 O -0.39 -8.38 10.53 -126.22 -1.33 -9.71 16 30 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.08 1.32 8.04 -2.39 -0.02 1.30 16 38 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.41 9.69 8.47 -92.71 -0.79 8.90 16 41 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 42 H 0.10 3.46 7.93 -2.39 -0.02 3.44 16 43 H 0.26 16.69 6.42 -92.70 -0.60 16.09 16 44 H 0.11 4.47 7.83 -2.91 -0.02 4.44 16 45 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 46 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 47 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16 48 H 0.09 4.21 7.95 -2.91 -0.02 4.19 16 Total: -1.00 -78.00 396.68 2.26 -75.74 By element: Atomic # 1 Polarization: 30.00 SS G_CDS: 0.33 Total: 30.33 kcal Atomic # 6 Polarization: -35.60 SS G_CDS: 4.90 Total: -30.70 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -2.26 Total: -84.00 kcal Atomic # 8 Polarization: -44.89 SS G_CDS: -2.76 Total: -47.65 kcal Atomic # 14 Polarization: 54.23 SS G_CDS: 2.05 Total: 56.28 kcal Total: -78.00 2.26 -75.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793650854.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.867 kcal (2) G-P(sol) polarization free energy of solvation -77.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds