Wall clock time and date at job start Tue Mar 31 2020 18:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.50684 * 2 1 4 4 O 1.43750 * 109.63161 * 239.68523 * 2 1 3 5 5 C 1.44788 * 104.81340 * 264.43754 * 4 2 1 6 6 C 1.54916 * 101.71989 * 323.89135 * 5 4 2 7 7 H 1.08995 * 110.84291 * 277.10223 * 6 5 4 8 8 C 1.53004 * 110.69286 * 153.96060 * 6 5 4 9 9 N 1.46496 * 109.46799 * 184.89291 * 8 6 5 10 10 C 1.34779 * 119.99953 * 179.72417 * 9 8 6 11 11 O 1.21282 * 119.99669 * 0.02562 * 10 9 8 12 12 C 1.50699 * 120.00131 * 180.02562 * 10 9 8 13 13 C 1.53008 * 109.46970 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.46982 * 54.99610 * 13 12 10 15 15 C 1.50694 * 109.47022 * 295.00022 * 13 12 10 16 16 H 1.07998 * 120.00198 * 325.84522 * 15 13 12 17 17 C 1.37882 * 120.00240 * 145.84429 * 15 13 12 18 18 N 1.31513 * 119.99399 * 6.11975 * 17 15 13 19 19 Si 1.86793 * 120.00353 * 186.12163 * 17 15 13 20 20 H 1.48502 * 109.47170 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47190 * 119.99913 * 19 17 15 22 22 H 1.48503 * 109.46966 * 240.00165 * 19 17 15 23 23 C 1.50695 * 109.46804 * 175.00075 * 13 12 10 24 24 C 1.38236 * 120.00309 * 63.47071 * 23 13 12 25 25 C 1.38234 * 120.00009 * 179.78345 * 24 23 13 26 26 C 1.38237 * 119.99993 * 0.44745 * 25 24 23 27 27 C 1.38235 * 120.00075 * 359.80302 * 26 25 24 28 28 C 1.38235 * 120.00045 * 359.97438 * 27 26 25 29 29 O 1.43359 * 109.63209 * 120.32042 * 2 1 3 30 30 H 1.09000 * 109.47361 * 299.68357 * 1 2 3 31 31 H 1.08999 * 109.47208 * 59.68182 * 1 2 3 32 32 H 1.08998 * 109.47398 * 179.67590 * 1 2 3 33 33 H 1.08995 * 109.46890 * 180.31398 * 3 2 1 34 34 H 1.09001 * 109.47069 * 300.32222 * 3 2 1 35 35 H 1.08999 * 109.46552 * 60.31847 * 3 2 1 36 36 H 1.09000 * 110.97503 * 205.78830 * 5 4 2 37 37 H 1.08991 * 110.98217 * 82.00473 * 5 4 2 38 38 H 1.08997 * 109.47015 * 64.89464 * 8 6 5 39 39 H 1.08999 * 109.47065 * 304.89453 * 8 6 5 40 40 H 0.97000 * 120.00395 * 0.02562 * 9 8 6 41 41 H 1.08995 * 109.47310 * 300.00003 * 12 10 9 42 42 H 1.08997 * 109.46853 * 60.00130 * 12 10 9 43 43 H 0.97007 * 119.99584 * 180.02562 * 18 17 15 44 44 H 1.08001 * 119.99913 * 359.97438 * 24 23 13 45 45 H 1.07997 * 120.00067 * 180.27331 * 25 24 23 46 46 H 1.08000 * 120.00030 * 179.83092 * 26 25 24 47 47 H 1.07997 * 119.99984 * 180.02562 * 27 26 25 48 48 H 1.08000 * 120.00112 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 8 2.0130 -0.6834 -1.1688 5 6 2.2651 -2.0391 -0.7272 6 6 2.7885 -1.8088 0.7125 7 1 3.8511 -1.5661 0.7048 8 6 2.5223 -3.0356 1.5872 9 7 2.9202 -2.7470 2.9672 10 6 2.7706 -3.6863 3.9222 11 8 2.3069 -4.7706 3.6389 12 6 3.1794 -3.3892 5.3419 13 6 2.9074 -4.6140 6.2178 14 1 3.4103 -5.4830 5.7935 15 6 1.4237 -4.8707 6.2756 16 1 0.7312 -4.0421 6.2589 17 6 0.9500 -6.1635 6.3497 18 7 1.7910 -7.1647 6.4913 19 14 -0.8859 -6.4929 6.2489 20 1 -1.6117 -5.2068 6.0923 21 1 -1.1687 -7.3667 5.0821 22 1 -1.3368 -7.1669 7.4930 23 6 3.4282 -4.3619 7.6093 24 6 2.8847 -3.3496 8.3779 25 6 3.3594 -3.1213 9.6560 26 6 4.3839 -3.8994 10.1620 27 6 4.9308 -4.9083 9.3915 28 6 4.4530 -5.1396 8.1152 29 8 2.0117 -0.6817 1.1656 30 1 -0.3634 0.5089 0.8928 31 1 -0.3633 0.5188 -0.8871 32 1 -0.3634 -1.0276 -0.0058 33 1 3.1309 1.4415 -0.0056 34 1 1.6732 1.9579 -0.8871 35 1 1.6825 1.9545 0.8928 36 1 3.0244 -2.5163 -1.3467 37 1 1.3457 -2.6243 -0.7194 38 1 3.0987 -3.8812 1.2122 39 1 1.4601 -3.2787 1.5586 40 1 3.2873 -1.8784 3.1946 41 1 4.2425 -3.1506 5.3716 42 1 2.6060 -2.5407 5.7151 43 1 1.4578 -8.0743 6.5430 44 1 2.0872 -2.7390 7.9810 45 1 2.9319 -2.3333 10.2581 46 1 4.7566 -3.7192 11.1595 47 1 5.7309 -5.5165 9.7870 48 1 4.8807 -5.9276 7.5130 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793650856.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:45 Heat of formation + Delta-G solvation = -108.817879 kcal Electronic energy + Delta-G solvation = -28754.081204 eV Core-core repulsion = 24773.760594 eV Total energy + Delta-G solvation = -3980.320609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.90624 -38.99459 -38.13154 -35.57221 -34.59783 -33.85568 -32.80360 -31.43113 -29.99504 -29.91347 -28.63938 -27.69788 -26.14377 -24.86244 -22.74912 -21.97094 -21.58369 -21.39742 -20.08773 -19.17104 -17.78608 -16.83861 -16.52324 -16.24022 -15.92827 -15.53335 -15.26834 -14.87621 -14.51244 -14.22075 -14.08260 -13.96088 -13.79387 -13.65098 -13.06530 -12.85585 -12.67065 -12.65714 -12.47104 -12.41034 -12.38596 -12.20429 -11.95262 -11.91138 -11.62841 -11.54768 -11.41757 -10.85979 -10.66576 -10.51852 -10.43149 -10.22551 -10.03030 -9.88433 -9.41576 -9.03581 -8.85373 -8.55435 -8.30442 -8.01482 -7.57435 -5.90725 -3.89581 2.31893 2.37720 3.04697 3.38936 3.46118 3.48913 3.53109 3.60152 3.73232 4.38776 4.48288 4.54661 4.55146 4.70930 4.75957 4.78468 5.03592 5.20731 5.29616 5.31469 5.39130 5.43760 5.45153 5.62258 5.63248 5.68924 5.75944 5.79472 5.86348 5.87957 5.91693 5.97686 6.13770 6.24876 6.32414 6.44306 6.57282 6.83214 6.84981 6.93640 6.94312 7.07947 7.33972 7.47876 7.56146 7.89473 7.98285 8.07383 8.13735 8.42193 9.09648 9.12329 9.72243 11.19598 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012264 B = 0.002997 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.512181 B = 9340.024011 C =10490.552104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.249 3.751 3 C -0.153 4.153 4 O -0.373 6.373 5 C 0.025 3.975 6 C 0.041 3.959 7 H 0.092 0.908 8 C 0.127 3.873 9 N -0.745 5.745 10 C 0.513 3.487 11 O -0.497 6.497 12 C -0.122 4.122 13 C 0.080 3.920 14 H 0.072 0.928 15 C -0.490 4.490 16 H 0.051 0.949 17 C 0.078 3.922 18 N -0.881 5.881 19 Si 0.886 3.114 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.288 1.288 23 C -0.020 4.020 24 C -0.115 4.115 25 C -0.132 4.132 26 C -0.156 4.156 27 C -0.128 4.128 28 C -0.119 4.119 29 O -0.368 6.368 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.396 0.604 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.258 0.742 44 H 0.113 0.887 45 H 0.105 0.895 46 H 0.103 0.897 47 H 0.105 0.895 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.228 14.229 -10.517 18.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.172 3.828 3 C -0.210 4.210 4 O -0.294 6.294 5 C -0.052 4.052 6 C -0.017 4.017 7 H 0.110 0.890 8 C 0.002 3.998 9 N -0.401 5.401 10 C 0.300 3.700 11 O -0.369 6.369 12 C -0.162 4.162 13 C 0.061 3.939 14 H 0.090 0.910 15 C -0.528 4.528 16 H 0.069 0.931 17 C -0.125 4.125 18 N -0.519 5.519 19 Si 0.715 3.285 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.214 1.214 23 C -0.021 4.021 24 C -0.133 4.133 25 C -0.150 4.150 26 C -0.174 4.174 27 C -0.146 4.146 28 C -0.137 4.137 29 O -0.289 6.289 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.130 0.870 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.230 0.770 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.068 0.932 44 H 0.131 0.869 45 H 0.123 0.877 46 H 0.122 0.878 47 H 0.123 0.877 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.854 13.341 -10.706 17.534 hybrid contribution -1.014 -0.035 0.139 1.024 sum 2.840 13.305 -10.567 17.227 Atomic orbital electron populations 1.22378 0.93807 1.03524 1.03229 1.23395 0.93065 0.91426 0.74903 1.22064 1.02400 0.93389 1.03185 1.89245 1.86033 1.21873 1.32252 1.24334 1.01936 0.84995 0.93980 1.24061 0.96808 0.87131 0.93671 0.89021 1.21259 1.01597 0.94320 0.82580 1.46062 1.68444 1.17949 1.07680 1.20922 0.77946 0.83959 0.87182 1.90757 1.41104 1.23164 1.81827 1.21787 0.99920 1.02542 0.91947 1.17839 0.97486 0.92667 0.85941 0.91009 1.20723 0.89719 0.91948 1.50374 0.93124 1.24801 0.97082 0.96384 0.94197 1.69926 1.33787 0.98999 1.49165 0.86641 0.86387 0.78218 0.77281 1.19982 1.21063 1.21404 1.20739 0.90693 0.91367 0.99307 1.20951 0.99570 0.98925 0.93902 1.20973 0.97882 0.99962 0.96180 1.20790 0.99185 0.98240 0.99208 1.20980 1.00348 0.98183 0.95135 1.21089 0.97415 0.99711 0.95501 1.88964 1.69411 1.41378 1.29148 0.90572 0.90796 0.91699 0.91483 0.90841 0.90361 0.86995 0.90101 0.90316 0.91117 0.77029 0.91669 0.90493 0.93243 0.86904 0.87691 0.87837 0.87668 0.86851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 9.19 37.16 0.34 -1.28 16 2 C 0.25 2.57 1.47 -26.73 -0.04 2.53 16 3 C -0.15 -1.29 9.24 37.16 0.34 -0.94 16 4 O -0.37 -4.00 11.01 -59.04 -0.65 -4.65 16 5 C 0.02 0.22 7.36 38.17 0.28 0.50 16 6 C 0.04 0.42 3.76 -25.72 -0.10 0.33 16 7 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 8 C 0.13 1.66 5.44 -4.04 -0.02 1.64 16 9 N -0.75 -11.19 5.49 -60.30 -0.33 -11.52 16 10 C 0.51 10.22 7.58 -10.98 -0.08 10.13 16 11 O -0.50 -12.35 14.98 5.56 0.08 -12.27 16 12 C -0.12 -2.36 4.95 -27.88 -0.14 -2.50 16 13 C 0.08 1.91 1.67 -92.93 -0.16 1.76 16 14 H 0.07 1.97 6.98 -51.93 -0.36 1.61 16 15 C -0.49 -13.26 6.37 -34.44 -0.22 -13.48 16 16 H 0.05 1.38 7.82 -52.49 -0.41 0.97 16 17 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 18 N -0.88 -26.03 12.87 55.43 0.71 -25.32 16 19 Si 0.89 22.47 29.54 -169.99 -5.02 17.45 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 C -0.02 -0.45 4.77 -104.62 -0.50 -0.95 16 24 C -0.12 -2.35 8.86 -39.58 -0.35 -2.70 16 25 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 26 C -0.16 -2.74 10.05 -39.58 -0.40 -3.14 16 27 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 28 C -0.12 -2.53 9.67 -39.58 -0.38 -2.91 16 29 O -0.37 -4.35 10.44 -59.04 -0.62 -4.97 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.71 8.03 -51.93 -0.42 0.30 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 40 H 0.40 5.00 8.42 -40.82 -0.34 4.65 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.08 1.40 7.78 -51.93 -0.40 1.00 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.11 2.22 7.76 -52.49 -0.41 1.82 16 45 H 0.10 1.61 8.06 -52.49 -0.42 1.18 16 46 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 47 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 48 H 0.11 2.43 7.95 -52.49 -0.42 2.01 16 LS Contribution 398.33 15.07 6.00 6.00 Total: -1.00 -33.33 398.33 -9.95 -43.28 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -7.82 Total: 6.45 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -2.31 Total: -14.47 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.38 Total: -36.84 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -1.18 Total: -21.88 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.33 -9.95 -43.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793650856.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.541 kcal (2) G-P(sol) polarization free energy of solvation -33.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds