Wall clock time and date at job start Tue Mar 31 2020 18:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.50684 * 2 1 4 4 O 1.43750 * 109.63161 * 239.68523 * 2 1 3 5 5 C 1.44788 * 104.81340 * 264.43754 * 4 2 1 6 6 C 1.54916 * 101.71989 * 323.89135 * 5 4 2 7 7 H 1.08995 * 110.84291 * 277.10223 * 6 5 4 8 8 C 1.53004 * 110.69286 * 153.96060 * 6 5 4 9 9 N 1.46496 * 109.46799 * 184.89291 * 8 6 5 10 10 C 1.34779 * 119.99953 * 179.72417 * 9 8 6 11 11 O 1.21282 * 119.99669 * 0.02562 * 10 9 8 12 12 C 1.50699 * 120.00131 * 180.02562 * 10 9 8 13 13 C 1.53008 * 109.46970 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.46982 * 54.99610 * 13 12 10 15 15 C 1.50694 * 109.47022 * 295.00022 * 13 12 10 16 16 H 1.07998 * 120.00198 * 325.84522 * 15 13 12 17 17 C 1.37882 * 120.00240 * 145.84429 * 15 13 12 18 18 N 1.31513 * 119.99399 * 6.11975 * 17 15 13 19 19 Si 1.86793 * 120.00353 * 186.12163 * 17 15 13 20 20 H 1.48502 * 109.47170 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47190 * 119.99913 * 19 17 15 22 22 H 1.48503 * 109.46966 * 240.00165 * 19 17 15 23 23 C 1.50695 * 109.46804 * 175.00075 * 13 12 10 24 24 C 1.38236 * 120.00309 * 63.47071 * 23 13 12 25 25 C 1.38234 * 120.00009 * 179.78345 * 24 23 13 26 26 C 1.38237 * 119.99993 * 0.44745 * 25 24 23 27 27 C 1.38235 * 120.00075 * 359.80302 * 26 25 24 28 28 C 1.38235 * 120.00045 * 359.97438 * 27 26 25 29 29 O 1.43359 * 109.63209 * 120.32042 * 2 1 3 30 30 H 1.09000 * 109.47361 * 299.68357 * 1 2 3 31 31 H 1.08999 * 109.47208 * 59.68182 * 1 2 3 32 32 H 1.08998 * 109.47398 * 179.67590 * 1 2 3 33 33 H 1.08995 * 109.46890 * 180.31398 * 3 2 1 34 34 H 1.09001 * 109.47069 * 300.32222 * 3 2 1 35 35 H 1.08999 * 109.46552 * 60.31847 * 3 2 1 36 36 H 1.09000 * 110.97503 * 205.78830 * 5 4 2 37 37 H 1.08991 * 110.98217 * 82.00473 * 5 4 2 38 38 H 1.08997 * 109.47015 * 64.89464 * 8 6 5 39 39 H 1.08999 * 109.47065 * 304.89453 * 8 6 5 40 40 H 0.97000 * 120.00395 * 0.02562 * 9 8 6 41 41 H 1.08995 * 109.47310 * 300.00003 * 12 10 9 42 42 H 1.08997 * 109.46853 * 60.00130 * 12 10 9 43 43 H 0.97007 * 119.99584 * 180.02562 * 18 17 15 44 44 H 1.08001 * 119.99913 * 359.97438 * 24 23 13 45 45 H 1.07997 * 120.00067 * 180.27331 * 25 24 23 46 46 H 1.08000 * 120.00030 * 179.83092 * 26 25 24 47 47 H 1.07997 * 119.99984 * 180.02562 * 27 26 25 48 48 H 1.08000 * 120.00112 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 8 2.0130 -0.6834 -1.1688 5 6 2.2651 -2.0391 -0.7272 6 6 2.7885 -1.8088 0.7125 7 1 3.8511 -1.5661 0.7048 8 6 2.5223 -3.0356 1.5872 9 7 2.9202 -2.7470 2.9672 10 6 2.7706 -3.6863 3.9222 11 8 2.3069 -4.7706 3.6389 12 6 3.1794 -3.3892 5.3419 13 6 2.9074 -4.6140 6.2178 14 1 3.4103 -5.4830 5.7935 15 6 1.4237 -4.8707 6.2756 16 1 0.7312 -4.0421 6.2589 17 6 0.9500 -6.1635 6.3497 18 7 1.7910 -7.1647 6.4913 19 14 -0.8859 -6.4929 6.2489 20 1 -1.6117 -5.2068 6.0923 21 1 -1.1687 -7.3667 5.0821 22 1 -1.3368 -7.1669 7.4930 23 6 3.4282 -4.3619 7.6093 24 6 2.8847 -3.3496 8.3779 25 6 3.3594 -3.1213 9.6560 26 6 4.3839 -3.8994 10.1620 27 6 4.9308 -4.9083 9.3915 28 6 4.4530 -5.1396 8.1152 29 8 2.0117 -0.6817 1.1656 30 1 -0.3634 0.5089 0.8928 31 1 -0.3633 0.5188 -0.8871 32 1 -0.3634 -1.0276 -0.0058 33 1 3.1309 1.4415 -0.0056 34 1 1.6732 1.9579 -0.8871 35 1 1.6825 1.9545 0.8928 36 1 3.0244 -2.5163 -1.3467 37 1 1.3457 -2.6243 -0.7194 38 1 3.0987 -3.8812 1.2122 39 1 1.4601 -3.2787 1.5586 40 1 3.2873 -1.8784 3.1946 41 1 4.2425 -3.1506 5.3716 42 1 2.6060 -2.5407 5.7151 43 1 1.4578 -8.0743 6.5430 44 1 2.0872 -2.7390 7.9810 45 1 2.9319 -2.3333 10.2581 46 1 4.7566 -3.7192 11.1595 47 1 5.7309 -5.5165 9.7870 48 1 4.8807 -5.9276 7.5130 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793650856.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:44 Heat of formation + Delta-G solvation = -129.862246 kcal Electronic energy + Delta-G solvation = -28754.993756 eV Core-core repulsion = 24773.760594 eV Total energy + Delta-G solvation = -3981.233162 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.73578 -40.56664 -39.65661 -36.63093 -35.83972 -35.43712 -33.82164 -33.35579 -31.48940 -31.06224 -30.00750 -28.40014 -27.70726 -26.27436 -24.34639 -23.14157 -22.91782 -22.20992 -21.60649 -20.79479 -18.61389 -18.51406 -18.02642 -17.47275 -17.11982 -16.94409 -16.41554 -16.19807 -16.14336 -15.66738 -15.45184 -15.16302 -15.07926 -14.55130 -14.39335 -14.26565 -13.96842 -13.82521 -13.64031 -13.57459 -13.43331 -13.24500 -13.16249 -13.13477 -13.03945 -12.86275 -12.67673 -12.51753 -12.43016 -12.30923 -11.81274 -11.66958 -11.30722 -11.22097 -10.94266 -10.68879 -10.64366 -10.34460 -9.94301 -9.52765 -9.17514 -8.03969 -6.05779 0.79346 0.85672 1.34261 1.37907 1.45473 1.98199 2.20452 2.41312 2.46205 2.90983 3.19844 3.36809 3.52183 3.63470 3.80548 3.94260 3.97132 4.21682 4.27109 4.30904 4.37249 4.38618 4.42921 4.51913 4.56695 4.63537 4.66139 4.68941 4.75297 4.76066 4.80414 4.87386 4.94738 4.97235 5.01192 5.13689 5.23207 5.25718 5.39272 5.54191 5.59394 5.65869 5.80004 5.85199 5.96971 6.08136 6.18976 6.43279 6.48310 6.77288 7.02111 7.56600 7.60410 9.05981 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012264 B = 0.002997 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.512181 B = 9340.024011 C =10490.552104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.239 3.761 3 C -0.150 4.150 4 O -0.382 6.382 5 C 0.024 3.976 6 C 0.049 3.951 7 H 0.111 0.889 8 C 0.126 3.874 9 N -0.725 5.725 10 C 0.512 3.488 11 O -0.556 6.556 12 C -0.116 4.116 13 C 0.083 3.917 14 H 0.025 0.975 15 C -0.483 4.483 16 H 0.044 0.956 17 C 0.025 3.975 18 N -0.916 5.916 19 Si 0.933 3.067 20 H -0.268 1.268 21 H -0.291 1.291 22 H -0.282 1.282 23 C -0.045 4.045 24 C -0.128 4.128 25 C -0.127 4.127 26 C -0.148 4.148 27 C -0.128 4.128 28 C -0.143 4.143 29 O -0.386 6.386 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.138 0.862 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.050 0.950 40 H 0.412 0.588 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.253 0.747 44 H 0.114 0.886 45 H 0.140 0.860 46 H 0.143 0.857 47 H 0.132 0.868 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.847 16.890 -9.705 20.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.163 3.837 3 C -0.207 4.207 4 O -0.303 6.303 5 C -0.053 4.053 6 C -0.009 4.009 7 H 0.129 0.871 8 C 0.002 3.998 9 N -0.380 5.380 10 C 0.299 3.701 11 O -0.433 6.433 12 C -0.156 4.156 13 C 0.064 3.936 14 H 0.044 0.956 15 C -0.521 4.521 16 H 0.063 0.937 17 C -0.174 4.174 18 N -0.556 5.556 19 Si 0.761 3.239 20 H -0.192 1.192 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.046 4.046 24 C -0.146 4.146 25 C -0.145 4.145 26 C -0.166 4.166 27 C -0.146 4.146 28 C -0.162 4.162 29 O -0.308 6.308 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.156 0.844 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.069 0.931 40 H 0.248 0.752 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.062 0.938 44 H 0.132 0.868 45 H 0.158 0.842 46 H 0.161 0.839 47 H 0.150 0.850 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.481 16.075 -9.908 19.408 hybrid contribution -1.137 -0.766 -0.102 1.374 sum 3.345 15.309 -10.010 18.595 Atomic orbital electron populations 1.22399 0.93546 1.02988 1.04024 1.23648 0.93444 0.92198 0.74394 1.22065 1.02414 0.92182 1.04064 1.89239 1.86088 1.22438 1.32500 1.24452 1.02660 0.84631 0.93511 1.24026 0.97700 0.85598 0.93531 0.87090 1.21351 1.00417 0.96250 0.81786 1.45812 1.66785 1.17531 1.07857 1.21024 0.77229 0.83752 0.88071 1.90739 1.44122 1.25626 1.82765 1.21670 1.01908 1.00939 0.91105 1.17621 0.95239 0.92851 0.87931 0.95622 1.20998 0.91501 0.91407 1.48220 0.93727 1.25452 1.00215 0.96717 0.95006 1.70057 1.34995 0.98965 1.51595 0.85892 0.82923 0.78100 0.77020 1.19223 1.21797 1.20767 1.20565 0.92272 0.93212 0.98519 1.21036 0.99870 0.98679 0.95049 1.21367 0.97405 1.00422 0.95266 1.21261 0.98090 0.96715 1.00515 1.21288 1.00705 0.98711 0.93908 1.21109 0.98303 0.99728 0.97020 1.88939 1.69778 1.41775 1.30311 0.90431 0.89356 0.92903 0.91450 0.89630 0.89825 0.84420 0.90325 0.89865 0.93116 0.75235 0.88947 0.88875 0.93784 0.86784 0.84205 0.83881 0.85013 0.88727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 9.19 71.98 0.66 -2.41 16 2 C 0.24 4.59 1.47 30.60 0.04 4.64 16 3 C -0.15 -2.23 9.24 71.98 0.66 -1.56 16 4 O -0.38 -7.53 11.01 -126.22 -1.39 -8.92 16 5 C 0.02 0.40 7.36 72.64 0.53 0.94 16 6 C 0.05 0.94 3.76 31.25 0.12 1.06 16 7 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 8 C 0.13 3.28 5.44 86.38 0.47 3.75 16 9 N -0.72 -21.44 5.49 -463.06 -2.54 -23.98 16 10 C 0.51 20.78 7.58 87.66 0.66 21.44 16 11 O -0.56 -28.91 14.98 -3.04 -0.05 -28.96 16 12 C -0.12 -4.54 4.95 29.85 0.15 -4.39 16 13 C 0.08 4.11 1.67 -12.29 -0.02 4.09 16 14 H 0.03 1.49 6.98 -2.39 -0.02 1.48 16 15 C -0.48 -26.93 6.37 25.60 0.16 -26.77 16 16 H 0.04 2.47 7.82 -2.91 -0.02 2.45 16 17 C 0.02 1.45 5.45 84.66 0.46 1.91 16 18 N -0.92 -56.69 12.87 21.45 0.28 -56.41 16 19 Si 0.93 47.34 29.54 68.60 2.03 49.37 16 20 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 21 H -0.29 -14.96 7.11 99.48 0.71 -14.26 16 22 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 23 C -0.05 -2.03 4.77 -19.87 -0.09 -2.12 16 24 C -0.13 -5.06 8.86 22.27 0.20 -4.86 16 25 C -0.13 -4.16 10.05 22.27 0.22 -3.94 16 26 C -0.15 -4.63 10.05 22.27 0.22 -4.40 16 27 C -0.13 -4.52 10.05 22.27 0.22 -4.29 16 28 C -0.14 -6.18 9.67 22.27 0.22 -5.96 16 29 O -0.39 -8.63 10.44 -126.22 -1.32 -9.95 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.08 1.34 8.03 -2.39 -0.02 1.32 16 38 H 0.08 2.11 8.14 -2.39 -0.02 2.10 16 39 H 0.05 1.54 8.13 -2.39 -0.02 1.52 16 40 H 0.41 9.75 8.42 -92.71 -0.78 8.97 16 41 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 42 H 0.09 3.32 7.78 -2.39 -0.02 3.30 16 43 H 0.25 15.12 8.31 -92.70 -0.77 14.35 16 44 H 0.11 4.37 7.76 -2.91 -0.02 4.34 16 45 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 46 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 47 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 48 H 0.09 4.30 7.95 -2.91 -0.02 4.28 16 Total: -1.00 -75.68 398.33 2.07 -73.61 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 0.16 Total: 28.14 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: 4.90 Total: -22.89 kcal Atomic # 7 Polarization: -78.13 SS G_CDS: -2.26 Total: -80.39 kcal Atomic # 8 Polarization: -45.07 SS G_CDS: -2.75 Total: -47.82 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -75.68 2.07 -73.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793650856.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.254 kcal (2) G-P(sol) polarization free energy of solvation -75.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds