Wall clock time and date at job start Tue Mar 31 2020 18:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.62947 * 2 1 4 4 O 1.43370 * 109.63249 * 239.75597 * 2 1 3 5 5 C 1.44189 * 107.28905 * 240.79172 * 4 2 1 6 6 C 1.54912 * 103.07707 * 21.43818 * 5 4 2 7 7 H 1.08993 * 111.01432 * 82.56224 * 6 5 4 8 8 C 1.53002 * 110.97743 * 206.33071 * 6 5 4 9 9 N 1.46500 * 109.47404 * 178.78851 * 8 6 5 10 10 C 1.34768 * 120.00343 * 180.02562 * 9 8 6 11 11 O 1.21290 * 120.00076 * 359.97438 * 10 9 8 12 12 C 1.50705 * 120.00336 * 180.02562 * 10 9 8 13 13 C 1.52993 * 109.47251 * 179.97438 * 12 10 9 14 14 H 1.09003 * 109.47610 * 306.15409 * 13 12 10 15 15 C 1.50700 * 109.47530 * 66.15220 * 13 12 10 16 16 H 1.08001 * 119.99898 * 35.27930 * 15 13 12 17 17 C 1.37879 * 120.00590 * 215.28836 * 15 13 12 18 18 N 1.31508 * 120.00238 * 185.61013 * 17 15 13 19 19 Si 1.86801 * 119.99737 * 5.60446 * 17 15 13 20 20 H 1.48502 * 109.47052 * 84.82987 * 19 17 15 21 21 H 1.48496 * 109.47455 * 204.83110 * 19 17 15 22 22 H 1.48500 * 109.47222 * 324.83421 * 19 17 15 23 23 C 1.50699 * 109.47152 * 186.15331 * 13 12 10 24 24 C 1.38236 * 119.99950 * 303.76186 * 23 13 12 25 25 C 1.38230 * 120.00110 * 179.78617 * 24 23 13 26 26 C 1.38238 * 120.00071 * 0.44468 * 25 24 23 27 27 C 1.38237 * 119.99614 * 359.81395 * 26 25 24 28 28 C 1.38234 * 120.00275 * 359.97438 * 27 26 25 29 29 O 1.43755 * 109.62985 * 120.39193 * 2 1 3 30 30 H 1.09000 * 109.47064 * 299.60968 * 1 2 3 31 31 H 1.09001 * 109.47278 * 59.60653 * 1 2 3 32 32 H 1.09004 * 109.47507 * 179.60555 * 1 2 3 33 33 H 1.08997 * 109.47456 * 180.39042 * 3 2 1 34 34 H 1.09003 * 109.47031 * 300.39383 * 3 2 1 35 35 H 1.09003 * 109.47080 * 60.39136 * 3 2 1 36 36 H 1.09002 * 110.69210 * 263.03878 * 5 4 2 37 37 H 1.08997 * 110.69336 * 139.83436 * 5 4 2 38 38 H 1.09005 * 109.47475 * 58.78560 * 8 6 5 39 39 H 1.09002 * 109.46932 * 298.79019 * 8 6 5 40 40 H 0.97002 * 119.99774 * 359.97438 * 9 8 6 41 41 H 1.08992 * 109.47040 * 59.99296 * 12 10 9 42 42 H 1.08998 * 109.46358 * 299.99719 * 12 10 9 43 43 H 0.97007 * 119.99769 * 179.97438 * 18 17 15 44 44 H 1.07998 * 119.99587 * 0.02562 * 24 23 13 45 45 H 1.08005 * 120.00200 * 180.27843 * 25 24 23 46 46 H 1.07998 * 120.00319 * 179.83211 * 26 25 24 47 47 H 1.08001 * 119.99772 * 180.02562 * 27 26 25 48 48 H 1.07999 * 120.00219 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 8 2.0117 -0.6802 -1.1666 5 6 2.7884 -1.8079 -0.7150 6 6 2.2651 -2.0400 0.7245 7 1 1.3458 -2.6255 0.7165 8 6 3.3309 -2.7112 1.5932 9 7 2.8128 -2.8886 2.9520 10 6 3.5829 -3.4627 3.8973 11 8 4.7048 -3.8331 3.6229 12 6 3.0497 -3.6457 5.2949 13 6 4.1155 -4.3167 6.1636 14 1 4.4482 -5.2374 5.6842 15 6 5.2881 -3.3848 6.3296 16 1 5.1254 -2.3196 6.4013 17 6 6.5688 -3.8920 6.3897 18 7 7.5814 -3.0926 6.6446 19 14 6.8656 -5.7148 6.1091 20 1 6.9779 -5.9795 4.6521 21 1 8.1240 -6.1213 6.7844 22 1 5.7306 -6.4928 6.6674 23 6 3.5328 -4.6367 7.5160 24 6 2.9713 -3.6323 8.2819 25 6 2.4329 -3.9265 9.5206 26 6 2.4642 -5.2237 9.9974 27 6 3.0306 -6.2272 9.2337 28 6 3.5651 -5.9337 7.9932 29 8 2.0129 -0.6850 1.1679 30 1 -0.3633 0.5078 0.8935 31 1 -0.3634 0.5199 -0.8864 32 1 -0.3634 -1.0277 -0.0071 33 1 3.1339 1.4381 -0.0070 34 1 1.6763 1.9579 -0.8865 35 1 1.6878 1.9539 0.8935 36 1 3.8508 -1.5642 -0.7040 37 1 2.5988 -2.6810 -1.3393 38 1 4.2225 -2.0848 1.6232 39 1 3.5842 -3.6837 1.1710 40 1 1.9157 -2.5921 3.1715 41 1 2.1586 -4.2726 5.2646 42 1 2.7958 -2.6734 5.7170 43 1 8.4824 -3.4496 6.6872 44 1 2.9498 -2.6183 7.9108 45 1 1.9901 -3.1425 10.1170 46 1 2.0460 -5.4532 10.9663 47 1 3.0547 -7.2408 9.6061 48 1 4.0072 -6.7178 7.3964 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793650859.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:49 Heat of formation + Delta-G solvation = -105.690424 kcal Electronic energy + Delta-G solvation = -28763.138120 eV Core-core repulsion = 24782.953127 eV Total energy + Delta-G solvation = -3980.184993 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.91242 -39.18179 -38.33227 -35.59328 -34.69297 -33.97852 -32.87059 -31.66458 -30.22375 -29.98629 -28.79106 -27.71838 -26.43681 -25.00452 -22.63857 -22.04042 -21.79998 -21.43124 -20.21028 -19.14348 -17.77303 -16.95094 -16.87549 -16.42142 -16.05238 -15.64712 -15.17683 -15.09484 -14.61168 -14.54327 -14.10005 -14.07387 -13.82920 -13.45443 -13.18233 -12.92820 -12.77370 -12.74955 -12.56048 -12.47847 -12.47339 -12.32158 -12.22852 -11.95896 -11.87532 -11.62953 -11.49789 -11.00568 -10.73069 -10.59324 -10.42121 -10.32861 -9.91897 -9.84897 -9.54998 -9.21852 -8.96592 -8.66560 -8.37828 -8.19369 -7.78756 -5.96951 -3.93725 2.11394 2.16802 3.03293 3.41436 3.44041 3.47208 3.51669 3.53964 3.67196 4.36038 4.46914 4.52863 4.54036 4.60021 4.68449 4.73665 4.97474 5.25431 5.26550 5.29940 5.32027 5.42159 5.42452 5.53503 5.55377 5.56404 5.59356 5.70714 5.77886 5.80356 5.90936 5.92681 5.94985 6.02536 6.10868 6.24981 6.34576 6.60895 6.72069 6.79414 6.84694 6.85769 7.02190 7.15977 7.28518 7.59608 7.73001 7.83151 7.99910 8.54398 8.97244 9.03121 9.67967 11.15948 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013922 B = 0.002924 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.746699 B = 9574.895809 C =10626.449658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.248 3.752 3 C -0.155 4.155 4 O -0.380 6.380 5 C 0.030 3.970 6 C 0.036 3.964 7 H 0.090 0.910 8 C 0.132 3.868 9 N -0.744 5.744 10 C 0.515 3.485 11 O -0.502 6.502 12 C -0.118 4.118 13 C 0.057 3.943 14 H 0.049 0.951 15 C -0.487 4.487 16 H 0.071 0.929 17 C 0.085 3.915 18 N -0.899 5.899 19 Si 0.873 3.127 20 H -0.273 1.273 21 H -0.297 1.297 22 H -0.259 1.259 23 C -0.035 4.035 24 C -0.108 4.108 25 C -0.126 4.126 26 C -0.151 4.151 27 C -0.125 4.125 28 C -0.137 4.137 29 O -0.360 6.360 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.397 0.603 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.262 0.738 44 H 0.117 0.883 45 H 0.110 0.890 46 H 0.107 0.893 47 H 0.108 0.892 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.279 2.231 -10.682 19.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.171 3.829 3 C -0.212 4.212 4 O -0.301 6.301 5 C -0.047 4.047 6 C -0.022 4.022 7 H 0.108 0.892 8 C 0.007 3.993 9 N -0.400 5.400 10 C 0.302 3.698 11 O -0.374 6.374 12 C -0.158 4.158 13 C 0.037 3.963 14 H 0.067 0.933 15 C -0.524 4.524 16 H 0.089 0.911 17 C -0.117 4.117 18 N -0.536 5.536 19 Si 0.701 3.299 20 H -0.198 1.198 21 H -0.223 1.223 22 H -0.184 1.184 23 C -0.036 4.036 24 C -0.126 4.126 25 C -0.144 4.144 26 C -0.169 4.169 27 C -0.143 4.143 28 C -0.156 4.156 29 O -0.281 6.281 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.121 0.879 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.103 0.897 43 H 0.071 0.929 44 H 0.135 0.865 45 H 0.128 0.872 46 H 0.125 0.875 47 H 0.126 0.874 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -15.212 2.125 -10.854 18.808 hybrid contribution -0.025 -0.797 0.054 0.799 sum -15.237 1.328 -10.801 18.724 Atomic orbital electron populations 1.22369 0.93801 1.03240 1.03332 1.23403 0.92917 0.91614 0.74924 1.22071 1.02720 0.93307 1.03106 1.88883 1.69574 1.42017 1.29665 1.24134 0.97021 0.89699 0.93880 1.24223 0.99191 0.85009 0.93734 0.89230 1.21163 0.95417 1.00031 0.82685 1.46011 1.18896 1.65246 1.09818 1.20849 0.85428 0.76797 0.86712 1.90743 1.18186 1.47543 1.80958 1.21685 0.99512 1.02548 0.92043 1.18112 0.93317 0.97628 0.87212 0.93267 1.20594 0.88553 0.93524 1.49754 0.91122 1.24897 0.95982 0.97450 0.93400 1.69899 0.99427 1.35556 1.48742 0.86963 0.77305 0.86662 0.78943 1.19827 1.22348 1.18352 1.20720 0.91885 0.91895 0.99090 1.20930 0.98375 0.99145 0.94173 1.21030 1.00866 0.96115 0.96390 1.20852 1.02945 0.93599 0.99547 1.20974 0.99694 0.98445 0.95173 1.21216 1.00926 0.96904 0.96510 1.89359 1.85860 1.21334 1.31573 0.90460 0.90836 0.91885 0.91290 0.90638 0.90566 0.89958 0.87933 0.90530 0.90086 0.76984 0.91323 0.89651 0.92854 0.86486 0.87233 0.87454 0.87394 0.86743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 9.20 37.16 0.34 -1.04 16 2 C 0.25 2.54 1.47 -26.73 -0.04 2.50 16 3 C -0.15 -1.42 9.24 37.16 0.34 -1.08 16 4 O -0.38 -4.12 10.86 -59.04 -0.64 -4.76 16 5 C 0.03 0.27 7.54 38.17 0.29 0.56 16 6 C 0.04 0.37 3.53 -25.72 -0.09 0.28 16 7 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 8 C 0.13 1.69 5.44 -4.04 -0.02 1.67 16 9 N -0.74 -10.80 5.55 -60.29 -0.33 -11.13 16 10 C 0.52 9.95 7.59 -10.99 -0.08 9.87 16 11 O -0.50 -12.19 15.02 5.55 0.08 -12.10 16 12 C -0.12 -2.18 4.82 -27.88 -0.13 -2.31 16 13 C 0.06 1.29 1.28 -92.93 -0.12 1.17 16 14 H 0.05 1.19 4.76 -51.93 -0.25 0.94 16 15 C -0.49 -13.47 7.23 -34.44 -0.25 -13.72 16 16 H 0.07 2.12 8.06 -52.49 -0.42 1.70 16 17 C 0.09 2.51 5.47 -17.82 -0.10 2.41 16 18 N -0.90 -28.26 13.96 55.43 0.77 -27.49 16 19 Si 0.87 22.70 27.01 -169.99 -4.59 18.10 16 20 H -0.27 -7.26 7.11 56.52 0.40 -6.86 16 21 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 22 H -0.26 -6.15 4.51 56.52 0.25 -5.90 16 23 C -0.04 -0.74 4.77 -104.62 -0.50 -1.24 16 24 C -0.11 -2.09 8.93 -39.59 -0.35 -2.44 16 25 C -0.13 -2.14 10.05 -39.58 -0.40 -2.54 16 26 C -0.15 -2.48 10.05 -39.58 -0.40 -2.87 16 27 C -0.12 -2.17 10.05 -39.58 -0.40 -2.56 16 28 C -0.14 -2.74 9.18 -39.58 -0.36 -3.10 16 29 O -0.36 -4.28 10.72 -59.04 -0.63 -4.92 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.76 8.04 -51.93 -0.42 0.35 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.40 4.69 8.47 -40.82 -0.35 4.35 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.09 1.49 7.42 -51.93 -0.39 1.11 16 43 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 44 H 0.12 2.19 7.44 -52.49 -0.39 1.80 16 45 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 46 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 47 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 48 H 0.11 2.28 6.28 -52.49 -0.33 1.95 16 LS Contribution 390.20 15.07 5.88 5.88 Total: -1.00 -34.93 390.20 -9.47 -44.41 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -7.74 Total: 6.45 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -2.27 Total: -14.44 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.44 Total: -38.62 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -1.19 Total: -21.78 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.59 Total: 18.10 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.93 -9.47 -44.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793650859.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.285 kcal (2) G-P(sol) polarization free energy of solvation -34.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds