Wall clock time and date at job start Tue Mar 31 2020 18:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.62947 * 2 1 4 4 O 1.43370 * 109.63249 * 239.75597 * 2 1 3 5 5 C 1.44189 * 107.28905 * 240.79172 * 4 2 1 6 6 C 1.54912 * 103.07707 * 21.43818 * 5 4 2 7 7 H 1.08993 * 111.01432 * 82.56224 * 6 5 4 8 8 C 1.53002 * 110.97743 * 206.33071 * 6 5 4 9 9 N 1.46500 * 109.47404 * 178.78851 * 8 6 5 10 10 C 1.34768 * 120.00343 * 180.02562 * 9 8 6 11 11 O 1.21290 * 120.00076 * 359.97438 * 10 9 8 12 12 C 1.50705 * 120.00336 * 180.02562 * 10 9 8 13 13 C 1.52993 * 109.47251 * 179.97438 * 12 10 9 14 14 H 1.09003 * 109.47610 * 306.15409 * 13 12 10 15 15 C 1.50700 * 109.47530 * 66.15220 * 13 12 10 16 16 H 1.08001 * 119.99898 * 35.27930 * 15 13 12 17 17 C 1.37879 * 120.00590 * 215.28836 * 15 13 12 18 18 N 1.31508 * 120.00238 * 185.61013 * 17 15 13 19 19 Si 1.86801 * 119.99737 * 5.60446 * 17 15 13 20 20 H 1.48502 * 109.47052 * 84.82987 * 19 17 15 21 21 H 1.48496 * 109.47455 * 204.83110 * 19 17 15 22 22 H 1.48500 * 109.47222 * 324.83421 * 19 17 15 23 23 C 1.50699 * 109.47152 * 186.15331 * 13 12 10 24 24 C 1.38236 * 119.99950 * 303.76186 * 23 13 12 25 25 C 1.38230 * 120.00110 * 179.78617 * 24 23 13 26 26 C 1.38238 * 120.00071 * 0.44468 * 25 24 23 27 27 C 1.38237 * 119.99614 * 359.81395 * 26 25 24 28 28 C 1.38234 * 120.00275 * 359.97438 * 27 26 25 29 29 O 1.43755 * 109.62985 * 120.39193 * 2 1 3 30 30 H 1.09000 * 109.47064 * 299.60968 * 1 2 3 31 31 H 1.09001 * 109.47278 * 59.60653 * 1 2 3 32 32 H 1.09004 * 109.47507 * 179.60555 * 1 2 3 33 33 H 1.08997 * 109.47456 * 180.39042 * 3 2 1 34 34 H 1.09003 * 109.47031 * 300.39383 * 3 2 1 35 35 H 1.09003 * 109.47080 * 60.39136 * 3 2 1 36 36 H 1.09002 * 110.69210 * 263.03878 * 5 4 2 37 37 H 1.08997 * 110.69336 * 139.83436 * 5 4 2 38 38 H 1.09005 * 109.47475 * 58.78560 * 8 6 5 39 39 H 1.09002 * 109.46932 * 298.79019 * 8 6 5 40 40 H 0.97002 * 119.99774 * 359.97438 * 9 8 6 41 41 H 1.08992 * 109.47040 * 59.99296 * 12 10 9 42 42 H 1.08998 * 109.46358 * 299.99719 * 12 10 9 43 43 H 0.97007 * 119.99769 * 179.97438 * 18 17 15 44 44 H 1.07998 * 119.99587 * 0.02562 * 24 23 13 45 45 H 1.08005 * 120.00200 * 180.27843 * 25 24 23 46 46 H 1.07998 * 120.00319 * 179.83211 * 26 25 24 47 47 H 1.08001 * 119.99772 * 180.02562 * 27 26 25 48 48 H 1.07999 * 120.00219 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 8 2.0117 -0.6802 -1.1666 5 6 2.7884 -1.8079 -0.7150 6 6 2.2651 -2.0400 0.7245 7 1 1.3458 -2.6255 0.7165 8 6 3.3309 -2.7112 1.5932 9 7 2.8128 -2.8886 2.9520 10 6 3.5829 -3.4627 3.8973 11 8 4.7048 -3.8331 3.6229 12 6 3.0497 -3.6457 5.2949 13 6 4.1155 -4.3167 6.1636 14 1 4.4482 -5.2374 5.6842 15 6 5.2881 -3.3848 6.3296 16 1 5.1254 -2.3196 6.4013 17 6 6.5688 -3.8920 6.3897 18 7 7.5814 -3.0926 6.6446 19 14 6.8656 -5.7148 6.1091 20 1 6.9779 -5.9795 4.6521 21 1 8.1240 -6.1213 6.7844 22 1 5.7306 -6.4928 6.6674 23 6 3.5328 -4.6367 7.5160 24 6 2.9713 -3.6323 8.2819 25 6 2.4329 -3.9265 9.5206 26 6 2.4642 -5.2237 9.9974 27 6 3.0306 -6.2272 9.2337 28 6 3.5651 -5.9337 7.9932 29 8 2.0129 -0.6850 1.1679 30 1 -0.3633 0.5078 0.8935 31 1 -0.3634 0.5199 -0.8864 32 1 -0.3634 -1.0277 -0.0071 33 1 3.1339 1.4381 -0.0070 34 1 1.6763 1.9579 -0.8865 35 1 1.6878 1.9539 0.8935 36 1 3.8508 -1.5642 -0.7040 37 1 2.5988 -2.6810 -1.3393 38 1 4.2225 -2.0848 1.6232 39 1 3.5842 -3.6837 1.1710 40 1 1.9157 -2.5921 3.1715 41 1 2.1586 -4.2726 5.2646 42 1 2.7958 -2.6734 5.7170 43 1 8.4824 -3.4496 6.6872 44 1 2.9498 -2.6183 7.9108 45 1 1.9901 -3.1425 10.1170 46 1 2.0460 -5.4532 10.9663 47 1 3.0547 -7.2408 9.6061 48 1 4.0072 -6.7178 7.3964 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793650859.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:48 Heat of formation + Delta-G solvation = -129.583373 kcal Electronic energy + Delta-G solvation = -28764.174196 eV Core-core repulsion = 24782.953127 eV Total energy + Delta-G solvation = -3981.221069 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.74179 -40.69626 -39.77126 -36.66006 -35.90472 -35.50785 -33.89245 -33.65057 -31.61495 -31.10766 -30.09007 -28.39815 -28.03460 -26.30631 -24.22827 -23.31945 -22.90946 -22.22622 -21.65640 -20.73242 -19.03611 -18.60429 -18.17278 -17.53759 -17.15537 -16.93983 -16.55492 -16.19712 -16.05241 -15.78016 -15.53712 -15.34814 -14.89397 -14.77413 -14.52694 -14.41274 -14.16268 -13.90328 -13.86588 -13.61726 -13.49082 -13.32158 -13.20702 -13.12904 -13.05278 -12.80913 -12.67903 -12.63354 -12.36149 -12.12136 -11.89168 -11.77720 -11.41773 -11.22231 -11.09580 -10.68816 -10.66245 -10.53098 -10.00680 -9.60744 -9.28559 -8.22297 -6.19072 0.69908 0.74842 1.31336 1.40377 1.42244 1.90333 2.19565 2.33352 2.42193 2.89080 3.08097 3.26668 3.47981 3.64531 3.79733 3.94611 3.95038 4.11241 4.12549 4.25404 4.31434 4.33516 4.38012 4.46695 4.50718 4.54284 4.62931 4.66589 4.69022 4.75514 4.78257 4.84640 4.86460 4.88035 4.97475 5.10566 5.14729 5.22238 5.22658 5.39077 5.41157 5.53440 5.69689 5.78403 5.83627 6.03044 6.07468 6.33468 6.37022 6.70664 6.80434 7.45090 7.51696 8.94753 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013922 B = 0.002924 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.746699 B = 9574.895809 C =10626.449658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.238 3.762 3 C -0.156 4.156 4 O -0.391 6.391 5 C 0.028 3.972 6 C 0.045 3.955 7 H 0.116 0.884 8 C 0.130 3.870 9 N -0.723 5.723 10 C 0.511 3.489 11 O -0.562 6.562 12 C -0.113 4.113 13 C 0.058 3.942 14 H 0.034 0.966 15 C -0.467 4.467 16 H 0.031 0.969 17 C 0.022 3.978 18 N -0.955 5.955 19 Si 0.923 3.077 20 H -0.286 1.286 21 H -0.299 1.299 22 H -0.224 1.224 23 C -0.060 4.060 24 C -0.124 4.124 25 C -0.124 4.124 26 C -0.142 4.142 27 C -0.124 4.124 28 C -0.156 4.156 29 O -0.383 6.383 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.130 0.870 38 H 0.048 0.952 39 H 0.090 0.910 40 H 0.413 0.587 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.258 0.742 44 H 0.112 0.888 45 H 0.140 0.860 46 H 0.146 0.854 47 H 0.139 0.861 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.933 0.847 -9.954 22.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.162 3.838 3 C -0.214 4.214 4 O -0.312 6.312 5 C -0.049 4.049 6 C -0.012 4.012 7 H 0.133 0.867 8 C 0.006 3.994 9 N -0.378 5.378 10 C 0.299 3.701 11 O -0.439 6.439 12 C -0.153 4.153 13 C 0.038 3.962 14 H 0.053 0.947 15 C -0.504 4.504 16 H 0.050 0.950 17 C -0.174 4.174 18 N -0.596 5.596 19 Si 0.750 3.250 20 H -0.213 1.213 21 H -0.226 1.226 22 H -0.148 1.148 23 C -0.061 4.061 24 C -0.142 4.142 25 C -0.142 4.142 26 C -0.160 4.160 27 C -0.142 4.142 28 C -0.174 4.174 29 O -0.305 6.305 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.148 0.852 38 H 0.067 0.933 39 H 0.108 0.892 40 H 0.250 0.750 41 H 0.126 0.874 42 H 0.112 0.888 43 H 0.067 0.933 44 H 0.130 0.870 45 H 0.158 0.842 46 H 0.164 0.836 47 H 0.157 0.843 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -18.959 0.751 -10.135 21.511 hybrid contribution 0.961 -0.268 -0.147 1.008 sum -17.998 0.483 -10.282 20.734 Atomic orbital electron populations 1.22343 0.91928 1.03818 1.04160 1.23686 0.94270 0.91580 0.74253 1.22117 1.01764 0.93369 1.04122 1.88872 1.69818 1.42479 1.30062 1.24245 0.96555 0.90309 0.93751 1.24201 0.99130 0.84581 0.93309 0.86673 1.21231 0.95555 1.00392 0.82202 1.45776 1.19017 1.63232 1.09813 1.21055 0.84905 0.76457 0.87677 1.90725 1.20683 1.50462 1.81995 1.21610 0.99511 1.03344 0.90873 1.17990 0.92862 0.95945 0.89370 0.94748 1.20820 0.90263 0.92582 1.46783 0.95038 1.25645 0.96130 1.01312 0.94270 1.70046 0.99754 1.37396 1.52431 0.86156 0.78075 0.82875 0.77928 1.21283 1.22645 1.14758 1.20479 0.94259 0.93282 0.98083 1.21019 0.99166 0.98581 0.95412 1.21396 0.99718 0.97592 0.95448 1.21334 1.01193 0.92790 1.00646 1.21336 0.98445 1.00400 0.93997 1.21308 1.01942 0.96236 0.97897 1.89335 1.86245 1.22166 1.32729 0.89880 0.89755 0.91437 0.92840 0.89100 0.90084 0.90739 0.85182 0.93341 0.89171 0.75038 0.87407 0.88815 0.93317 0.87004 0.84208 0.83616 0.84339 0.87277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 9.20 71.98 0.66 -1.66 16 2 C 0.24 4.58 1.47 30.59 0.04 4.62 16 3 C -0.16 -2.78 9.24 71.98 0.66 -2.11 16 4 O -0.39 -7.93 10.86 -126.22 -1.37 -9.30 16 5 C 0.03 0.48 7.54 72.64 0.55 1.03 16 6 C 0.05 0.85 3.53 31.25 0.11 0.96 16 7 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 8 C 0.13 3.35 5.44 86.38 0.47 3.82 16 9 N -0.72 -20.54 5.55 -463.04 -2.57 -23.11 16 10 C 0.51 19.93 7.59 87.66 0.66 20.60 16 11 O -0.56 -28.27 15.02 -3.06 -0.05 -28.31 16 12 C -0.11 -4.13 4.82 29.85 0.14 -3.99 16 13 C 0.06 2.64 1.28 -12.29 -0.02 2.63 16 14 H 0.03 1.67 4.76 -2.39 -0.01 1.66 16 15 C -0.47 -26.84 7.23 25.60 0.19 -26.66 16 16 H 0.03 2.00 8.06 -2.91 -0.02 1.98 16 17 C 0.02 1.38 5.47 84.66 0.46 1.85 16 18 N -0.95 -63.27 13.96 21.45 0.30 -62.97 16 19 Si 0.92 48.34 27.01 68.60 1.85 50.20 16 20 H -0.29 -15.49 7.11 99.48 0.71 -14.79 16 21 H -0.30 -15.60 7.11 99.48 0.71 -14.89 16 22 H -0.22 -10.36 4.51 99.48 0.45 -9.91 16 23 C -0.06 -2.48 4.77 -19.87 -0.09 -2.57 16 24 C -0.12 -4.58 8.93 22.27 0.20 -4.39 16 25 C -0.12 -3.76 10.05 22.27 0.22 -3.54 16 26 C -0.14 -3.97 10.05 22.27 0.22 -3.74 16 27 C -0.12 -3.81 10.05 22.27 0.22 -3.59 16 28 C -0.16 -5.87 9.18 22.27 0.20 -5.67 16 29 O -0.38 -8.77 10.72 -126.22 -1.35 -10.12 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 1.39 8.04 -2.39 -0.02 1.37 16 37 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.41 9.04 8.47 -92.71 -0.79 8.25 16 41 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 42 H 0.09 3.25 7.42 -2.39 -0.02 3.23 16 43 H 0.26 16.32 8.31 -92.70 -0.77 15.55 16 44 H 0.11 4.15 7.44 -2.91 -0.02 4.12 16 45 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 46 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 47 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 48 H 0.11 4.13 6.28 -2.91 -0.02 4.11 16 Total: -1.00 -80.95 390.20 1.65 -79.31 By element: Atomic # 1 Polarization: 26.82 SS G_CDS: -0.09 Total: 26.73 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: 4.92 Total: -22.41 kcal Atomic # 7 Polarization: -83.82 SS G_CDS: -2.27 Total: -86.09 kcal Atomic # 8 Polarization: -44.96 SS G_CDS: -2.77 Total: -47.73 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 1.85 Total: 50.20 kcal Total: -80.95 1.65 -79.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793650859.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.278 kcal (2) G-P(sol) polarization free energy of solvation -80.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds