Wall clock time and date at job start Tue Mar 31 2020 18:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46650 * 2 1 4 4 O 1.42961 * 109.46992 * 120.00192 * 2 1 3 5 5 C 1.43091 * 113.76782 * 178.79838 * 4 2 1 6 6 C 1.53262 * 108.94001 * 302.02703 * 5 4 2 7 7 N 1.46502 * 109.57287 * 174.33680 * 6 5 4 8 8 C 1.34783 * 119.99740 * 155.00279 * 7 6 5 9 9 O 1.21278 * 120.00009 * 359.97438 * 8 7 6 10 10 C 1.50701 * 119.99870 * 179.97438 * 8 7 6 11 11 C 1.52995 * 109.47198 * 179.97438 * 10 8 7 12 12 H 1.09006 * 109.46714 * 304.99702 * 11 10 8 13 13 C 1.50693 * 109.47152 * 64.99711 * 11 10 8 14 14 H 1.07997 * 120.00002 * 26.94766 * 13 11 10 15 15 C 1.37881 * 120.00047 * 206.93862 * 13 11 10 16 16 N 1.31515 * 120.00005 * 186.81634 * 15 13 11 17 17 Si 1.86799 * 120.00056 * 6.82287 * 15 13 11 18 18 H 1.48496 * 109.47007 * 274.45761 * 17 15 13 19 19 H 1.48504 * 109.46839 * 34.45412 * 17 15 13 20 20 H 1.48501 * 109.47559 * 154.45452 * 17 15 13 21 21 C 1.50704 * 109.47130 * 185.00118 * 11 10 8 22 22 C 1.38233 * 119.99760 * 298.05678 * 21 11 10 23 23 C 1.38236 * 119.99821 * 179.78368 * 22 21 11 24 24 C 1.38236 * 119.99998 * 0.44870 * 23 22 21 25 25 C 1.38232 * 119.99819 * 359.80888 * 24 23 22 26 26 C 1.38233 * 120.00233 * 359.97438 * 25 24 23 27 27 C 1.53258 * 108.84641 * 54.52344 * 6 5 4 28 28 O 1.42967 * 109.47153 * 240.00253 * 2 1 3 29 29 H 1.09002 * 109.46936 * 299.99545 * 1 2 3 30 30 H 1.08996 * 109.47029 * 60.00019 * 1 2 3 31 31 H 1.08998 * 109.46877 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46724 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47389 * 299.99760 * 3 2 1 34 34 H 1.08997 * 109.47464 * 60.00266 * 3 2 1 35 35 H 1.09005 * 109.55867 * 182.19141 * 5 4 2 36 36 H 1.08994 * 109.56117 * 61.86765 * 5 4 2 37 37 H 1.09003 * 109.57461 * 294.58456 * 6 5 4 38 38 H 0.96992 * 120.00248 * 334.99279 * 7 6 5 39 39 H 1.08999 * 109.46948 * 59.99572 * 10 8 7 40 40 H 1.08999 * 109.46913 * 300.00385 * 10 8 7 41 41 H 0.96998 * 120.00015 * 180.02562 * 16 15 13 42 42 H 1.08002 * 120.00182 * 0.02562 * 22 21 11 43 43 H 1.07996 * 120.00135 * 180.27649 * 23 22 21 44 44 H 1.08001 * 120.00230 * 179.82899 * 24 23 22 45 45 H 1.08000 * 119.99778 * 180.02562 * 25 24 23 46 46 H 1.07998 * 120.00229 * 180.02562 * 26 25 24 47 47 H 1.09000 * 109.55590 * 65.31673 * 27 6 5 48 48 H 1.09002 * 109.55801 * 185.63540 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0066 -0.6740 1.1673 5 6 3.4332 -0.7514 1.2465 6 6 3.9624 -1.4690 -0.0001 7 7 5.4271 -1.4372 0.0000 8 6 6.1217 -2.3822 -0.6642 9 8 5.5342 -3.2591 -1.2615 10 6 7.6283 -2.3491 -0.6647 11 6 8.1640 -3.5243 -1.4848 12 1 7.7498 -4.4557 -1.0985 13 6 7.7611 -3.3554 -2.9271 14 1 7.5857 -2.3675 -3.3266 15 6 7.6164 -4.4621 -3.7366 16 7 7.3969 -4.3106 -5.0245 17 14 7.7319 -6.1766 -3.0042 18 1 9.1554 -6.5955 -2.9470 19 1 7.1629 -6.1683 -1.6326 20 1 6.9693 -7.1290 -3.8507 21 6 9.6672 -3.5633 -1.3844 22 6 10.4189 -2.5022 -1.8533 23 6 11.7975 -2.5359 -1.7571 24 6 12.4248 -3.6348 -1.2004 25 6 11.6733 -4.6982 -0.7364 26 6 10.2945 -4.6625 -0.8285 27 6 3.4331 -0.7514 -1.2466 28 8 2.0066 -0.6739 -1.1673 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.7194 -1.3096 2.1380 36 1 3.8512 0.2541 1.2937 37 1 3.6197 -2.5038 0.0011 38 1 5.8969 -0.7361 0.4779 39 1 7.9936 -2.4248 0.3595 40 1 7.9710 -1.4125 -1.1043 41 1 7.2948 -5.0891 -5.5939 42 1 9.9289 -1.6451 -2.2912 43 1 12.3845 -1.7050 -2.1193 44 1 13.5020 -3.6624 -1.1278 45 1 12.1634 -5.5565 -0.3011 46 1 9.7074 -5.4931 -0.4656 47 1 3.8512 0.2541 -1.2938 48 1 3.7194 -1.3095 -2.1380 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793819405.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:25 Heat of formation + Delta-G solvation = -104.167749 kcal Electronic energy + Delta-G solvation = -29294.396383 eV Core-core repulsion = 25314.277418 eV Total energy + Delta-G solvation = -3980.118965 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.67451 -39.17793 -38.36853 -35.81626 -35.17541 -34.02468 -32.38043 -31.67606 -30.24561 -29.94214 -28.67653 -27.59126 -26.15905 -25.80065 -22.98562 -22.36018 -21.86041 -20.37962 -20.14156 -19.17213 -17.80936 -16.99284 -16.82110 -16.57925 -16.01982 -15.88545 -15.49752 -15.13477 -14.59490 -14.43011 -14.04198 -13.93723 -13.50421 -13.40572 -13.32127 -12.96298 -12.84298 -12.73570 -12.61083 -12.44197 -12.41992 -12.31056 -12.00833 -11.92331 -11.83651 -11.35467 -11.15123 -11.11069 -10.81139 -10.52724 -10.38424 -10.35920 -9.92657 -9.66219 -9.62313 -9.21356 -9.02709 -8.72705 -8.46067 -8.23258 -7.84423 -6.00290 -3.96547 2.07097 2.12587 3.20035 3.30505 3.40591 3.45888 3.46719 3.49539 3.74914 4.44529 4.50206 4.55104 4.55944 4.62858 4.70044 4.91868 5.14297 5.24760 5.27708 5.38068 5.41342 5.45729 5.49456 5.50931 5.53559 5.56183 5.66218 5.68438 5.87737 5.89691 5.93490 5.97304 6.03509 6.06230 6.21165 6.29983 6.48286 6.56016 6.66765 6.79915 6.83962 7.01456 7.09580 7.12118 7.23797 7.56407 7.69209 7.80057 7.86635 8.50566 8.87220 8.98605 9.64048 11.12696 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016077 B = 0.003096 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.172385 B = 9040.620096 C = 9907.468204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.260 3.740 3 C -0.206 4.206 4 O -0.381 6.381 5 C 0.052 3.948 6 C 0.084 3.916 7 N -0.739 5.739 8 C 0.514 3.486 9 O -0.493 6.493 10 C -0.114 4.114 11 C 0.048 3.952 12 H 0.054 0.946 13 C -0.484 4.484 14 H 0.071 0.929 15 C 0.085 3.915 16 N -0.898 5.898 17 Si 0.867 3.133 18 H -0.274 1.274 19 H -0.261 1.261 20 H -0.291 1.291 21 C -0.039 4.039 22 C -0.101 4.101 23 C -0.126 4.126 24 C -0.149 4.149 25 C -0.124 4.124 26 C -0.139 4.139 27 C 0.046 3.954 28 O -0.380 6.380 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.395 0.605 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.262 0.738 42 H 0.119 0.881 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.109 0.891 46 H 0.108 0.892 47 H 0.056 0.944 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.350 11.218 13.988 18.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.183 3.817 3 C -0.263 4.263 4 O -0.301 6.301 5 C -0.025 4.025 6 C -0.023 4.023 7 N -0.397 5.397 8 C 0.301 3.699 9 O -0.363 6.363 10 C -0.154 4.154 11 C 0.029 3.971 12 H 0.072 0.928 13 C -0.521 4.521 14 H 0.089 0.911 15 C -0.118 4.118 16 N -0.535 5.535 17 Si 0.695 3.305 18 H -0.200 1.200 19 H -0.186 1.186 20 H -0.218 1.218 21 C -0.040 4.040 22 C -0.119 4.119 23 C -0.145 4.145 24 C -0.167 4.167 25 C -0.142 4.142 26 C -0.157 4.157 27 C -0.032 4.032 28 O -0.299 6.299 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.077 0.923 37 H 0.121 0.879 38 H 0.228 0.772 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.072 0.928 42 H 0.137 0.863 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.127 0.873 46 H 0.126 0.874 47 H 0.074 0.926 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.111 10.286 13.329 17.595 hybrid contribution 0.807 -0.446 0.294 0.968 sum -4.303 9.841 13.622 17.347 Atomic orbital electron populations 1.21597 0.89644 1.04131 1.03085 1.22818 0.94676 0.87875 0.76322 1.22840 1.02639 0.96958 1.03893 1.88160 1.20438 1.78454 1.43036 1.22873 0.81308 0.99966 0.98328 1.21968 0.82165 1.02696 0.95426 1.46021 1.04980 1.32100 1.56646 1.20933 0.90600 0.80732 0.77616 1.90768 1.70897 1.35060 1.39596 1.21623 0.90390 1.02684 1.00725 1.18244 0.86778 0.94813 0.97302 0.92813 1.20574 1.45353 0.94881 0.91321 0.91068 1.24861 0.93763 0.98731 0.94416 1.69885 1.49320 1.30312 1.04003 0.86966 0.78232 0.85246 0.80041 1.20027 1.18620 1.21786 1.20764 0.98456 0.92577 0.92219 1.20945 0.92903 0.99252 0.98812 1.21058 0.95004 0.98062 1.00328 1.20862 0.98744 0.94948 1.02189 1.20957 0.94128 0.98138 1.01004 1.21061 0.94354 0.98687 1.01593 1.23185 0.79943 1.00079 0.99982 1.88202 1.21460 1.78047 1.42199 0.90397 0.90203 0.90786 0.91599 0.90381 0.90599 0.87854 0.92289 0.87852 0.77167 0.91116 0.89616 0.92795 0.86252 0.87158 0.87384 0.87334 0.87377 0.92572 0.87109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 9.21 37.16 0.34 -0.84 16 2 C 0.26 3.00 1.50 -26.73 -0.04 2.96 16 3 C -0.21 -1.84 8.11 37.16 0.30 -1.54 16 4 O -0.38 -4.71 10.35 -59.03 -0.61 -5.33 16 5 C 0.05 0.56 6.08 37.29 0.23 0.79 16 6 C 0.08 1.15 2.87 -67.66 -0.19 0.96 16 7 N -0.74 -9.94 5.09 -53.54 -0.27 -10.21 16 8 C 0.51 9.50 7.55 -10.98 -0.08 9.41 16 9 O -0.49 -11.73 14.64 5.56 0.08 -11.65 16 10 C -0.11 -2.01 4.93 -27.89 -0.14 -2.14 16 11 C 0.05 1.07 1.21 -92.93 -0.11 0.96 16 12 H 0.05 1.31 4.88 -51.93 -0.25 1.05 16 13 C -0.48 -13.11 6.98 -34.44 -0.24 -13.35 16 14 H 0.07 2.08 8.06 -52.49 -0.42 1.65 16 15 C 0.08 2.48 5.47 -17.82 -0.10 2.38 16 16 N -0.90 -27.91 13.96 55.43 0.77 -27.13 16 17 Si 0.87 22.69 26.58 -169.99 -4.52 18.17 16 18 H -0.27 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.26 -6.68 6.29 56.52 0.36 -6.32 16 20 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 21 C -0.04 -0.82 4.52 -104.62 -0.47 -1.29 16 22 C -0.10 -1.93 8.86 -39.58 -0.35 -2.28 16 23 C -0.13 -2.12 10.05 -39.58 -0.40 -2.52 16 24 C -0.15 -2.41 10.05 -39.58 -0.40 -2.81 16 25 C -0.12 -2.13 10.05 -39.59 -0.40 -2.53 16 26 C -0.14 -2.72 9.07 -39.58 -0.36 -3.07 16 27 C 0.05 0.66 6.18 37.29 0.23 0.89 16 28 O -0.38 -5.55 10.35 -59.03 -0.61 -6.16 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.58 5.11 -51.93 -0.27 0.32 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.51 6.53 -51.93 -0.34 0.17 16 37 H 0.10 1.74 7.57 -51.93 -0.39 1.35 16 38 H 0.39 3.83 8.61 -40.82 -0.35 3.48 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.09 1.39 7.68 -51.93 -0.40 0.99 16 41 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 42 H 0.12 2.22 7.71 -52.49 -0.40 1.82 16 43 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 44 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 45 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 46 H 0.11 2.07 7.89 -52.49 -0.41 1.65 16 47 H 0.06 0.70 6.53 -51.93 -0.34 0.36 16 48 H 0.11 1.94 8.14 -51.93 -0.42 1.52 16 LS Contribution 382.33 15.07 5.76 5.76 Total: -1.00 -34.48 382.33 -8.99 -43.47 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -7.41 Total: 7.11 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -2.18 Total: -14.03 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.50 Total: -37.35 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -1.14 Total: -23.13 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.52 Total: 18.17 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.48 -8.99 -43.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793819405.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.703 kcal (2) G-P(sol) polarization free energy of solvation -34.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds