Wall clock time and date at job start Tue Mar 31 2020 18:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46650 * 2 1 4 4 O 1.42961 * 109.46992 * 120.00192 * 2 1 3 5 5 C 1.43091 * 113.76782 * 178.79838 * 4 2 1 6 6 C 1.53262 * 108.94001 * 302.02703 * 5 4 2 7 7 N 1.46502 * 109.57287 * 174.33680 * 6 5 4 8 8 C 1.34783 * 119.99740 * 155.00279 * 7 6 5 9 9 O 1.21278 * 120.00009 * 359.97438 * 8 7 6 10 10 C 1.50701 * 119.99870 * 179.97438 * 8 7 6 11 11 C 1.52995 * 109.47198 * 179.97438 * 10 8 7 12 12 H 1.09006 * 109.46714 * 304.99702 * 11 10 8 13 13 C 1.50693 * 109.47152 * 64.99711 * 11 10 8 14 14 H 1.07997 * 120.00002 * 26.94766 * 13 11 10 15 15 C 1.37881 * 120.00047 * 206.93862 * 13 11 10 16 16 N 1.31515 * 120.00005 * 186.81634 * 15 13 11 17 17 Si 1.86799 * 120.00056 * 6.82287 * 15 13 11 18 18 H 1.48496 * 109.47007 * 274.45761 * 17 15 13 19 19 H 1.48504 * 109.46839 * 34.45412 * 17 15 13 20 20 H 1.48501 * 109.47559 * 154.45452 * 17 15 13 21 21 C 1.50704 * 109.47130 * 185.00118 * 11 10 8 22 22 C 1.38233 * 119.99760 * 298.05678 * 21 11 10 23 23 C 1.38236 * 119.99821 * 179.78368 * 22 21 11 24 24 C 1.38236 * 119.99998 * 0.44870 * 23 22 21 25 25 C 1.38232 * 119.99819 * 359.80888 * 24 23 22 26 26 C 1.38233 * 120.00233 * 359.97438 * 25 24 23 27 27 C 1.53258 * 108.84641 * 54.52344 * 6 5 4 28 28 O 1.42967 * 109.47153 * 240.00253 * 2 1 3 29 29 H 1.09002 * 109.46936 * 299.99545 * 1 2 3 30 30 H 1.08996 * 109.47029 * 60.00019 * 1 2 3 31 31 H 1.08998 * 109.46877 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46724 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47389 * 299.99760 * 3 2 1 34 34 H 1.08997 * 109.47464 * 60.00266 * 3 2 1 35 35 H 1.09005 * 109.55867 * 182.19141 * 5 4 2 36 36 H 1.08994 * 109.56117 * 61.86765 * 5 4 2 37 37 H 1.09003 * 109.57461 * 294.58456 * 6 5 4 38 38 H 0.96992 * 120.00248 * 334.99279 * 7 6 5 39 39 H 1.08999 * 109.46948 * 59.99572 * 10 8 7 40 40 H 1.08999 * 109.46913 * 300.00385 * 10 8 7 41 41 H 0.96998 * 120.00015 * 180.02562 * 16 15 13 42 42 H 1.08002 * 120.00182 * 0.02562 * 22 21 11 43 43 H 1.07996 * 120.00135 * 180.27649 * 23 22 21 44 44 H 1.08001 * 120.00230 * 179.82899 * 24 23 22 45 45 H 1.08000 * 119.99778 * 180.02562 * 25 24 23 46 46 H 1.07998 * 120.00229 * 180.02562 * 26 25 24 47 47 H 1.09000 * 109.55590 * 65.31673 * 27 6 5 48 48 H 1.09002 * 109.55801 * 185.63540 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0066 -0.6740 1.1673 5 6 3.4332 -0.7514 1.2465 6 6 3.9624 -1.4690 -0.0001 7 7 5.4271 -1.4372 0.0000 8 6 6.1217 -2.3822 -0.6642 9 8 5.5342 -3.2591 -1.2615 10 6 7.6283 -2.3491 -0.6647 11 6 8.1640 -3.5243 -1.4848 12 1 7.7498 -4.4557 -1.0985 13 6 7.7611 -3.3554 -2.9271 14 1 7.5857 -2.3675 -3.3266 15 6 7.6164 -4.4621 -3.7366 16 7 7.3969 -4.3106 -5.0245 17 14 7.7319 -6.1766 -3.0042 18 1 9.1554 -6.5955 -2.9470 19 1 7.1629 -6.1683 -1.6326 20 1 6.9693 -7.1290 -3.8507 21 6 9.6672 -3.5633 -1.3844 22 6 10.4189 -2.5022 -1.8533 23 6 11.7975 -2.5359 -1.7571 24 6 12.4248 -3.6348 -1.2004 25 6 11.6733 -4.6982 -0.7364 26 6 10.2945 -4.6625 -0.8285 27 6 3.4331 -0.7514 -1.2466 28 8 2.0066 -0.6739 -1.1673 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.7194 -1.3096 2.1380 36 1 3.8512 0.2541 1.2937 37 1 3.6197 -2.5038 0.0011 38 1 5.8969 -0.7361 0.4779 39 1 7.9936 -2.4248 0.3595 40 1 7.9710 -1.4125 -1.1043 41 1 7.2948 -5.0891 -5.5939 42 1 9.9289 -1.6451 -2.2912 43 1 12.3845 -1.7050 -2.1193 44 1 13.5020 -3.6624 -1.1278 45 1 12.1634 -5.5565 -0.3011 46 1 9.7074 -5.4931 -0.4656 47 1 3.8512 0.2541 -1.2938 48 1 3.7194 -1.3095 -2.1380 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793819405.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:24 Heat of formation + Delta-G solvation = -128.139940 kcal Electronic energy + Delta-G solvation = -29295.435895 eV Core-core repulsion = 25314.277418 eV Total energy + Delta-G solvation = -3981.158477 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.72933 -40.61204 -39.77181 -36.83553 -36.49334 -35.71266 -33.78581 -33.28936 -31.61675 -31.15263 -29.96909 -28.44999 -27.56695 -27.19306 -24.50017 -23.55599 -23.22867 -21.79528 -21.23615 -20.66716 -19.04226 -18.81093 -18.10219 -17.82852 -17.27324 -16.96447 -16.61602 -16.43150 -16.14978 -15.94485 -15.47502 -15.40455 -14.95255 -14.63305 -14.55892 -14.41702 -14.16343 -14.04523 -13.77826 -13.67184 -13.63777 -13.29771 -13.21722 -13.08123 -12.91130 -12.77474 -12.70961 -12.30812 -12.09571 -12.08641 -11.89872 -11.80537 -11.49805 -11.49547 -11.05091 -10.74707 -10.61594 -10.58929 -10.00407 -9.62639 -9.31154 -8.24389 -6.19180 0.67603 0.72893 1.27113 1.31830 1.39100 1.84574 2.06545 2.37437 2.49271 2.73406 3.06788 3.21558 3.50077 3.61147 3.71999 3.85673 3.88294 4.07053 4.11620 4.23426 4.29543 4.31021 4.43527 4.49536 4.51495 4.56980 4.63812 4.67109 4.69999 4.72019 4.79780 4.80813 4.84725 4.87204 5.03551 5.12679 5.18647 5.21918 5.37881 5.38382 5.41034 5.68428 5.76435 5.81548 5.82921 6.02007 6.13441 6.32365 6.34891 6.66945 6.79593 7.43104 7.48471 8.92741 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016077 B = 0.003096 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.172385 B = 9040.620096 C = 9907.468204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.245 3.755 3 C -0.200 4.200 4 O -0.393 6.393 5 C 0.059 3.941 6 C 0.086 3.914 7 N -0.712 5.712 8 C 0.512 3.488 9 O -0.558 6.558 10 C -0.109 4.109 11 C 0.048 3.952 12 H 0.032 0.968 13 C -0.459 4.459 14 H 0.038 0.962 15 C 0.023 3.977 16 N -0.951 5.951 17 Si 0.916 3.084 18 H -0.260 1.260 19 H -0.258 1.258 20 H -0.301 1.301 21 C -0.062 4.062 22 C -0.117 4.117 23 C -0.124 4.124 24 C -0.140 4.140 25 C -0.125 4.125 26 C -0.158 4.158 27 C 0.050 3.950 28 O -0.405 6.405 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.119 0.881 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.419 0.581 39 H 0.110 0.890 40 H 0.102 0.898 41 H 0.258 0.742 42 H 0.114 0.886 43 H 0.141 0.859 44 H 0.146 0.854 45 H 0.138 0.862 46 H 0.104 0.896 47 H 0.081 0.919 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.199 13.156 17.146 21.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.169 3.831 3 C -0.257 4.257 4 O -0.313 6.313 5 C -0.018 4.018 6 C -0.021 4.021 7 N -0.371 5.371 8 C 0.300 3.700 9 O -0.434 6.434 10 C -0.149 4.149 11 C 0.029 3.971 12 H 0.050 0.950 13 C -0.497 4.497 14 H 0.056 0.944 15 C -0.173 4.173 16 N -0.593 5.593 17 Si 0.743 3.257 18 H -0.185 1.185 19 H -0.183 1.183 20 H -0.228 1.228 21 C -0.063 4.063 22 C -0.135 4.135 23 C -0.142 4.142 24 C -0.158 4.158 25 C -0.143 4.143 26 C -0.176 4.176 27 C -0.028 4.028 28 O -0.325 6.325 29 H 0.120 0.880 30 H 0.108 0.892 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.137 0.863 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.257 0.743 39 H 0.129 0.871 40 H 0.120 0.880 41 H 0.067 0.933 42 H 0.132 0.868 43 H 0.159 0.841 44 H 0.164 0.836 45 H 0.156 0.844 46 H 0.122 0.878 47 H 0.099 0.901 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.940 12.282 16.563 20.829 hybrid contribution 0.159 -0.923 -0.602 1.114 sum -2.782 11.359 15.962 19.787 Atomic orbital electron populations 1.21691 0.88309 1.03738 1.04776 1.23334 0.95848 0.88968 0.74961 1.22806 1.02749 0.94931 1.05259 1.88151 1.21182 1.78885 1.43120 1.22956 0.80732 1.01433 0.96662 1.21924 0.81873 1.01078 0.97180 1.45641 1.05018 1.31298 1.55110 1.21180 0.91183 0.80618 0.77026 1.90754 1.72026 1.37902 1.42678 1.21569 0.89621 1.01390 1.02325 1.18113 0.88681 0.95737 0.94591 0.94969 1.20823 1.42433 0.92827 0.93580 0.94423 1.25554 0.94907 1.02158 0.94706 1.70023 1.53183 1.30739 1.05382 0.86179 0.78720 0.81636 0.79163 1.18462 1.18250 1.22773 1.20489 0.96871 0.94160 0.94786 1.21024 0.94280 0.98862 0.99330 1.21419 0.94080 0.99328 0.99330 1.21339 1.00693 0.93771 1.00022 1.21324 0.93102 0.99511 1.00335 1.21192 0.95839 0.98169 1.02407 1.22984 0.80654 1.00651 0.98464 1.88174 1.21129 1.79091 1.44121 0.88022 0.89166 0.92265 0.91360 0.89844 0.88432 0.86271 0.88993 0.91738 0.74318 0.87143 0.87974 0.93312 0.86784 0.84120 0.83580 0.84387 0.87773 0.90131 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 9.21 71.98 0.66 -1.57 16 2 C 0.24 5.35 1.50 30.60 0.05 5.39 16 3 C -0.20 -3.02 8.11 71.98 0.58 -2.44 16 4 O -0.39 -9.11 10.35 -126.22 -1.31 -10.42 16 5 C 0.06 1.13 6.08 72.07 0.44 1.57 16 6 C 0.09 2.39 2.87 45.17 0.13 2.52 16 7 N -0.71 -18.58 5.09 -441.69 -2.25 -20.83 16 8 C 0.51 19.22 7.55 87.66 0.66 19.89 16 9 O -0.56 -28.12 14.64 -3.02 -0.04 -28.16 16 10 C -0.11 -3.77 4.93 29.85 0.15 -3.62 16 11 C 0.05 2.17 1.21 -12.29 -0.01 2.16 16 12 H 0.03 1.60 4.88 -2.38 -0.01 1.58 16 13 C -0.46 -25.91 6.98 25.60 0.18 -25.73 16 14 H 0.04 2.32 8.06 -2.91 -0.02 2.30 16 15 C 0.02 1.41 5.47 84.66 0.46 1.87 16 16 N -0.95 -62.46 13.96 21.45 0.30 -62.16 16 17 Si 0.92 48.70 26.58 68.60 1.82 50.52 16 18 H -0.26 -12.98 7.11 99.48 0.71 -12.28 16 19 H -0.26 -13.36 6.29 99.48 0.63 -12.74 16 20 H -0.30 -16.21 7.11 99.48 0.71 -15.50 16 21 C -0.06 -2.53 4.52 -19.87 -0.09 -2.62 16 22 C -0.12 -4.28 8.86 22.27 0.20 -4.08 16 23 C -0.12 -3.71 10.05 22.27 0.22 -3.49 16 24 C -0.14 -3.90 10.05 22.27 0.22 -3.67 16 25 C -0.12 -3.83 10.05 22.27 0.22 -3.60 16 26 C -0.16 -5.90 9.07 22.27 0.20 -5.70 16 27 C 0.05 1.50 6.18 72.07 0.45 1.95 16 28 O -0.40 -12.14 10.35 -126.22 -1.31 -13.45 16 29 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 0.99 5.11 -2.39 -0.01 0.97 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.12 1.94 8.14 -2.38 -0.02 1.92 16 36 H 0.09 1.21 6.53 -2.39 -0.02 1.19 16 37 H 0.06 2.32 7.57 -2.39 -0.02 2.30 16 38 H 0.42 6.95 8.61 -92.71 -0.80 6.15 16 39 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 40 H 0.10 3.19 7.68 -2.39 -0.02 3.17 16 41 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 42 H 0.11 4.18 7.71 -2.91 -0.02 4.16 16 43 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 44 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 45 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 46 H 0.10 3.88 7.89 -2.91 -0.02 3.86 16 47 H 0.08 1.96 6.53 -2.39 -0.02 1.95 16 48 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -82.19 382.33 2.03 -80.16 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 0.09 Total: 25.51 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: 4.72 Total: -21.18 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -1.95 Total: -82.99 kcal Atomic # 8 Polarization: -49.38 SS G_CDS: -2.66 Total: -52.03 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 1.82 Total: 50.52 kcal Total: -82.19 2.03 -80.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793819405.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.975 kcal (2) G-P(sol) polarization free energy of solvation -82.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds