Wall clock time and date at job start Tue Mar 31 2020 18:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.51114 * 2 1 4 4 C 1.52879 * 109.58238 * 239.98435 * 2 1 3 5 5 N 1.47149 * 108.60721 * 187.91753 * 4 2 1 6 6 C 1.34775 * 120.98784 * 230.49749 * 5 4 2 7 7 O 1.21284 * 119.99388 * 359.72320 * 6 5 4 8 8 C 1.50697 * 120.00380 * 179.71971 * 6 5 4 9 9 C 1.50701 * 109.47119 * 180.02562 * 8 6 5 10 10 C 1.37636 * 120.12909 * 265.00230 * 9 8 6 11 11 C 1.38606 * 120.25293 * 180.02562 * 10 9 8 12 12 C 1.38663 * 120.49955 * 359.97438 * 11 10 9 13 13 C 1.37593 * 120.24612 * 0.02562 * 12 11 10 14 14 C 1.40694 * 120.12827 * 85.02572 * 9 8 6 15 15 C 1.41396 * 120.24634 * 359.97438 * 14 9 8 16 16 H 1.08001 * 119.99714 * 334.06229 * 15 14 9 17 17 C 1.39946 * 119.99986 * 154.05456 * 15 14 9 18 18 N 1.30819 * 119.99946 * 343.65630 * 17 15 14 19 19 Si 1.86805 * 119.99854 * 163.66128 * 17 15 14 20 20 H 1.48498 * 109.46834 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47109 * 120.00027 * 19 17 15 22 22 H 1.48499 * 109.46565 * 239.99859 * 19 17 15 23 23 C 1.47154 * 118.03399 * 50.22995 * 5 4 2 24 24 C 1.53292 * 108.38522 * 309.71490 * 23 5 4 25 25 H 1.08998 * 109.51100 * 292.32683 * 24 23 5 26 26 C 1.53000 * 109.51469 * 172.22512 * 24 23 5 27 27 O 1.42898 * 109.47108 * 174.99615 * 26 24 23 28 28 O 1.42962 * 109.51392 * 120.10261 * 2 1 3 29 29 H 1.09006 * 109.47249 * 299.89403 * 1 2 3 30 30 H 1.08999 * 109.47566 * 59.89517 * 1 2 3 31 31 H 1.08997 * 109.46979 * 179.90081 * 1 2 3 32 32 H 1.08998 * 109.47272 * 180.10065 * 3 2 1 33 33 H 1.08997 * 109.47113 * 300.10378 * 3 2 1 34 34 H 1.09000 * 109.47427 * 60.10658 * 3 2 1 35 35 H 1.09001 * 109.61489 * 68.10231 * 4 2 1 36 36 H 1.08996 * 109.52363 * 307.68654 * 4 2 1 37 37 H 1.09000 * 109.46919 * 60.00495 * 8 6 5 38 38 H 1.09000 * 109.47278 * 300.00456 * 8 6 5 39 39 H 1.08006 * 119.87344 * 359.74224 * 10 9 8 40 40 H 1.07997 * 119.75595 * 179.97438 * 11 10 9 41 41 H 1.07998 * 119.87357 * 179.97438 * 12 11 10 42 42 H 1.08001 * 120.12262 * 180.02562 * 13 12 11 43 43 H 0.97000 * 119.99590 * 180.02562 * 18 17 15 44 44 H 1.08999 * 109.68457 * 69.43519 * 23 5 4 45 45 H 1.08997 * 109.68614 * 189.95144 * 23 5 4 46 46 H 1.08998 * 109.47057 * 294.99900 * 26 24 23 47 47 H 1.09007 * 109.46915 * 55.00162 * 26 24 23 48 48 H 0.96707 * 114.00194 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4422 0.0000 4 6 2.0423 -0.7205 -1.2472 5 7 3.5011 -0.8766 -1.1333 6 6 4.3193 -0.5042 -2.1374 7 8 3.8553 -0.0372 -3.1561 8 6 5.8105 -0.6681 -1.9946 9 6 6.4918 -0.1797 -3.2469 10 6 6.8214 -1.0678 -4.2454 11 6 7.4485 -0.6215 -5.3980 12 6 7.7506 0.7222 -5.5596 13 6 7.4304 1.6279 -4.5746 14 6 6.7939 1.1859 -3.3997 15 6 6.4601 2.1076 -2.3808 16 1 5.6430 1.8953 -1.7072 17 6 7.1886 3.2947 -2.2449 18 7 8.3540 3.4172 -2.8265 19 14 6.4970 4.7044 -1.2330 20 1 5.1726 4.3167 -0.6844 21 1 7.4250 5.0135 -0.1156 22 1 6.3434 5.9037 -2.0951 23 6 4.0406 -1.4456 0.1119 24 6 3.4312 -0.6849 1.2950 25 1 3.8036 0.3395 1.2998 26 6 3.8212 -1.3765 2.6029 27 8 3.3517 -0.6033 3.7090 28 8 2.0075 -0.6758 1.1658 29 1 -0.3634 0.5122 0.8910 30 1 -0.3634 0.5154 -0.8890 31 1 -0.3633 -1.0276 -0.0018 32 1 3.1309 1.4414 -0.0018 33 1 1.6765 1.9568 -0.8890 34 1 1.6796 1.9557 0.8909 35 1 1.8042 -0.1323 -2.1334 36 1 1.5727 -1.7014 -1.3199 37 1 6.0470 -1.7207 -1.8388 38 1 6.1598 -0.0871 -1.1411 39 1 6.5945 -2.1173 -4.1283 40 1 7.7039 -1.3254 -6.1762 41 1 8.2398 1.0588 -6.4617 42 1 7.6662 2.6740 -4.7027 43 1 8.8591 4.2399 -2.7321 44 1 3.7757 -2.5008 0.1784 45 1 5.1252 -1.3381 0.1250 46 1 3.3723 -2.3692 2.6368 47 1 4.9063 -1.4663 2.6568 48 1 3.5643 -0.9828 4.5727 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817627749.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:09 Heat of formation + Delta-G solvation = -109.621249 kcal Electronic energy + Delta-G solvation = -30279.579288 eV Core-core repulsion = 26299.223842 eV Total energy + Delta-G solvation = -3980.355446 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.53340 -38.62020 -37.26084 -36.83501 -34.56018 -33.83402 -33.61959 -31.68275 -30.09442 -29.45863 -27.69491 -27.41581 -26.07648 -25.36833 -24.59311 -21.97029 -20.93670 -20.43985 -19.58385 -18.68049 -17.52722 -17.14637 -16.94279 -16.63588 -15.80196 -15.39890 -15.20908 -14.92064 -14.77127 -14.44373 -14.30567 -13.73165 -13.64313 -13.38656 -13.27619 -12.90890 -12.61003 -12.58530 -12.31292 -12.12091 -12.01890 -11.81983 -11.63041 -11.56568 -11.34566 -11.21149 -11.13919 -11.05056 -10.97230 -10.67689 -10.48552 -10.38739 -10.24447 -9.89196 -9.48356 -9.36505 -9.18844 -9.15335 -8.29412 -7.31183 -7.29032 -6.73934 -4.34520 2.76167 2.91636 3.07209 3.12352 3.20351 3.26570 3.28050 3.49994 3.93453 3.98523 4.65307 4.68518 4.77916 4.87189 4.91142 5.03338 5.06159 5.18047 5.26192 5.30799 5.37156 5.55203 5.63238 5.69823 5.73463 5.82345 5.83357 5.86306 5.94672 5.98783 6.06405 6.11270 6.27712 6.31919 6.39448 6.51052 6.66097 6.80029 7.08594 7.18786 7.29628 7.42310 7.44099 7.61629 7.72469 7.92997 8.06971 8.13428 8.31518 8.64550 8.75990 8.91755 9.01589 10.20260 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010961 B = 0.004446 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.878337 B = 6296.133991 C = 7311.241269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.100 3.900 3 C -0.175 4.175 4 C 0.091 3.909 5 N -0.626 5.626 6 C 0.521 3.479 7 O -0.515 6.515 8 C -0.069 4.069 9 C -0.183 4.183 10 C -0.080 4.080 11 C -0.239 4.239 12 C -0.107 4.107 13 C -0.158 4.158 14 C 0.130 3.870 15 C -0.455 4.455 16 H 0.073 0.927 17 C 0.078 3.922 18 N -0.794 5.794 19 Si 0.899 3.101 20 H -0.261 1.261 21 H -0.274 1.274 22 H -0.272 1.272 23 C 0.085 3.915 24 C 0.072 3.928 25 H 0.077 0.923 26 C 0.087 3.913 27 O -0.564 6.564 28 O -0.362 6.362 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.117 0.883 43 H 0.279 0.721 44 H 0.074 0.926 45 H 0.100 0.900 46 H 0.055 0.945 47 H 0.065 0.935 48 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.849 -7.931 11.108 16.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.060 3.940 3 C -0.233 4.233 4 C -0.032 4.032 5 N -0.363 5.363 6 C 0.310 3.690 7 O -0.388 6.388 8 C -0.108 4.108 9 C -0.184 4.184 10 C -0.099 4.099 11 C -0.258 4.258 12 C -0.125 4.125 13 C -0.178 4.178 14 C 0.127 3.873 15 C -0.485 4.485 16 H 0.091 0.909 17 C -0.139 4.139 18 N -0.420 5.420 19 Si 0.723 3.277 20 H -0.185 1.185 21 H -0.200 1.200 22 H -0.197 1.197 23 C -0.040 4.040 24 C 0.013 3.987 25 H 0.095 0.905 26 C 0.009 3.991 27 O -0.369 6.369 28 O -0.281 6.281 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.118 0.882 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.134 0.866 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.118 0.882 46 H 0.073 0.927 47 H 0.083 0.917 48 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -9.225 -7.197 10.129 15.476 hybrid contribution 0.228 0.403 0.730 0.864 sum -8.997 -6.795 10.859 15.653 Atomic orbital electron populations 1.21693 0.91784 1.02795 1.02826 1.21808 0.95007 0.91937 0.85282 1.22360 1.02589 0.95652 1.02652 1.22110 0.81033 1.00913 0.99162 1.48223 1.06204 1.65330 1.16531 1.21289 0.89514 0.76126 0.82027 1.90675 1.77187 1.42442 1.28491 1.20289 0.89397 1.00925 1.00217 1.19044 1.09910 0.93874 0.95619 1.20289 0.98887 0.96593 0.94111 1.20302 1.11083 0.95404 0.99034 1.20680 1.00283 0.93734 0.97832 1.21288 1.04179 0.98950 0.93357 1.17328 0.88350 0.90064 0.91539 1.19470 1.14054 1.01524 1.13475 0.90922 1.25858 0.93719 0.99211 0.95154 1.69824 1.09379 1.26642 1.36159 0.86405 0.80306 0.81083 0.79864 1.18458 1.19973 1.19662 1.22209 1.00187 0.97660 0.83895 1.22485 0.82847 1.00386 0.92943 0.90475 1.22083 0.97716 0.93992 0.85318 1.86556 1.81956 1.51943 1.16442 1.87994 1.19814 1.76810 1.43474 0.91496 0.90810 0.91796 0.91687 0.91282 0.91871 0.88199 0.91475 0.90633 0.88661 0.89812 0.89660 0.89573 0.86553 0.91014 0.90828 0.88202 0.92686 0.91711 0.77519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 8.85 37.16 0.33 -1.08 16 2 C 0.10 1.32 1.11 -90.68 -0.10 1.22 16 3 C -0.18 -2.54 8.08 37.16 0.30 -2.24 16 4 C 0.09 1.31 5.27 -3.75 -0.02 1.29 16 5 N -0.63 -9.82 2.55 -172.54 -0.44 -10.26 16 6 C 0.52 10.29 7.34 -10.99 -0.08 10.21 16 7 O -0.51 -12.35 15.50 5.55 0.09 -12.27 16 8 C -0.07 -1.34 3.56 -29.04 -0.10 -1.44 16 9 C -0.18 -4.39 4.43 -103.91 -0.46 -4.85 16 10 C -0.08 -1.86 9.66 -39.67 -0.38 -2.24 16 11 C -0.24 -5.57 10.05 -39.29 -0.39 -5.97 16 12 C -0.11 -2.61 10.02 -39.66 -0.40 -3.01 16 13 C -0.16 -4.24 8.68 -38.87 -0.34 -4.58 16 14 C 0.13 3.46 5.56 -106.83 -0.59 2.86 16 15 C -0.46 -11.94 8.14 -37.74 -0.31 -12.25 16 16 H 0.07 1.87 6.68 -52.49 -0.35 1.52 16 17 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 18 N -0.79 -20.47 10.97 55.55 0.61 -19.86 16 19 Si 0.90 18.98 29.59 -169.99 -5.03 13.95 16 20 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 22 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 23 C 0.08 1.03 5.83 -3.53 -0.02 1.01 16 24 C 0.07 0.90 2.67 -26.58 -0.07 0.83 16 25 H 0.08 1.11 6.26 -51.93 -0.33 0.78 16 26 C 0.09 0.83 6.71 37.16 0.25 1.08 16 27 O -0.56 -5.99 13.63 -39.71 -0.54 -6.53 16 28 O -0.36 -4.96 9.84 -39.71 -0.39 -5.35 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 1.08 6.12 -51.93 -0.32 0.76 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 1.60 7.07 -51.93 -0.37 1.23 16 36 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 37 H 0.08 1.23 7.93 -51.93 -0.41 0.82 16 38 H 0.10 1.83 6.58 -51.93 -0.34 1.48 16 39 H 0.08 1.70 8.06 -52.48 -0.42 1.28 16 40 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 42 H 0.12 3.20 6.22 -52.49 -0.33 2.87 16 43 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.10 1.12 6.05 -51.93 -0.31 0.80 16 46 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.38 2.06 9.12 45.56 0.42 2.47 16 LS Contribution 382.29 15.07 5.76 5.76 Total: -1.00 -32.83 382.29 -8.97 -41.81 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -6.55 Total: 10.04 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -2.48 Total: -17.29 kcal Atomic # 7 Polarization: -30.29 SS G_CDS: 0.17 Total: -30.12 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.85 Total: -24.14 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.83 -8.97 -41.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817627749.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.814 kcal (2) G-P(sol) polarization free energy of solvation -32.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds