Wall clock time and date at job start Tue Mar 31 2020 18:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.51114 * 2 1 4 4 C 1.52879 * 109.58238 * 239.98435 * 2 1 3 5 5 N 1.47149 * 108.60721 * 187.91753 * 4 2 1 6 6 C 1.34775 * 120.98784 * 230.49749 * 5 4 2 7 7 O 1.21284 * 119.99388 * 359.72320 * 6 5 4 8 8 C 1.50697 * 120.00380 * 179.71971 * 6 5 4 9 9 C 1.50701 * 109.47119 * 180.02562 * 8 6 5 10 10 C 1.37636 * 120.12909 * 265.00230 * 9 8 6 11 11 C 1.38606 * 120.25293 * 180.02562 * 10 9 8 12 12 C 1.38663 * 120.49955 * 359.97438 * 11 10 9 13 13 C 1.37593 * 120.24612 * 0.02562 * 12 11 10 14 14 C 1.40694 * 120.12827 * 85.02572 * 9 8 6 15 15 C 1.41396 * 120.24634 * 359.97438 * 14 9 8 16 16 H 1.08001 * 119.99714 * 334.06229 * 15 14 9 17 17 C 1.39946 * 119.99986 * 154.05456 * 15 14 9 18 18 N 1.30819 * 119.99946 * 343.65630 * 17 15 14 19 19 Si 1.86805 * 119.99854 * 163.66128 * 17 15 14 20 20 H 1.48498 * 109.46834 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47109 * 120.00027 * 19 17 15 22 22 H 1.48499 * 109.46565 * 239.99859 * 19 17 15 23 23 C 1.47154 * 118.03399 * 50.22995 * 5 4 2 24 24 C 1.53292 * 108.38522 * 309.71490 * 23 5 4 25 25 H 1.08998 * 109.51100 * 292.32683 * 24 23 5 26 26 C 1.53000 * 109.51469 * 172.22512 * 24 23 5 27 27 O 1.42898 * 109.47108 * 174.99615 * 26 24 23 28 28 O 1.42962 * 109.51392 * 120.10261 * 2 1 3 29 29 H 1.09006 * 109.47249 * 299.89403 * 1 2 3 30 30 H 1.08999 * 109.47566 * 59.89517 * 1 2 3 31 31 H 1.08997 * 109.46979 * 179.90081 * 1 2 3 32 32 H 1.08998 * 109.47272 * 180.10065 * 3 2 1 33 33 H 1.08997 * 109.47113 * 300.10378 * 3 2 1 34 34 H 1.09000 * 109.47427 * 60.10658 * 3 2 1 35 35 H 1.09001 * 109.61489 * 68.10231 * 4 2 1 36 36 H 1.08996 * 109.52363 * 307.68654 * 4 2 1 37 37 H 1.09000 * 109.46919 * 60.00495 * 8 6 5 38 38 H 1.09000 * 109.47278 * 300.00456 * 8 6 5 39 39 H 1.08006 * 119.87344 * 359.74224 * 10 9 8 40 40 H 1.07997 * 119.75595 * 179.97438 * 11 10 9 41 41 H 1.07998 * 119.87357 * 179.97438 * 12 11 10 42 42 H 1.08001 * 120.12262 * 180.02562 * 13 12 11 43 43 H 0.97000 * 119.99590 * 180.02562 * 18 17 15 44 44 H 1.08999 * 109.68457 * 69.43519 * 23 5 4 45 45 H 1.08997 * 109.68614 * 189.95144 * 23 5 4 46 46 H 1.08998 * 109.47057 * 294.99900 * 26 24 23 47 47 H 1.09007 * 109.46915 * 55.00162 * 26 24 23 48 48 H 0.96707 * 114.00194 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4422 0.0000 4 6 2.0423 -0.7205 -1.2472 5 7 3.5011 -0.8766 -1.1333 6 6 4.3193 -0.5042 -2.1374 7 8 3.8553 -0.0372 -3.1561 8 6 5.8105 -0.6681 -1.9946 9 6 6.4918 -0.1797 -3.2469 10 6 6.8214 -1.0678 -4.2454 11 6 7.4485 -0.6215 -5.3980 12 6 7.7506 0.7222 -5.5596 13 6 7.4304 1.6279 -4.5746 14 6 6.7939 1.1859 -3.3997 15 6 6.4601 2.1076 -2.3808 16 1 5.6430 1.8953 -1.7072 17 6 7.1886 3.2947 -2.2449 18 7 8.3540 3.4172 -2.8265 19 14 6.4970 4.7044 -1.2330 20 1 5.1726 4.3167 -0.6844 21 1 7.4250 5.0135 -0.1156 22 1 6.3434 5.9037 -2.0951 23 6 4.0406 -1.4456 0.1119 24 6 3.4312 -0.6849 1.2950 25 1 3.8036 0.3395 1.2998 26 6 3.8212 -1.3765 2.6029 27 8 3.3517 -0.6033 3.7090 28 8 2.0075 -0.6758 1.1658 29 1 -0.3634 0.5122 0.8910 30 1 -0.3634 0.5154 -0.8890 31 1 -0.3633 -1.0276 -0.0018 32 1 3.1309 1.4414 -0.0018 33 1 1.6765 1.9568 -0.8890 34 1 1.6796 1.9557 0.8909 35 1 1.8042 -0.1323 -2.1334 36 1 1.5727 -1.7014 -1.3199 37 1 6.0470 -1.7207 -1.8388 38 1 6.1598 -0.0871 -1.1411 39 1 6.5945 -2.1173 -4.1283 40 1 7.7039 -1.3254 -6.1762 41 1 8.2398 1.0588 -6.4617 42 1 7.6662 2.6740 -4.7027 43 1 8.8591 4.2399 -2.7321 44 1 3.7757 -2.5008 0.1784 45 1 5.1252 -1.3381 0.1250 46 1 3.3723 -2.3692 2.6368 47 1 4.9063 -1.4663 2.6568 48 1 3.5643 -0.9828 4.5727 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817627749.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:08 Heat of formation + Delta-G solvation = -131.346764 kcal Electronic energy + Delta-G solvation = -30280.521377 eV Core-core repulsion = 26299.223842 eV Total energy + Delta-G solvation = -3981.297535 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.73854 -40.09713 -38.95182 -37.66334 -35.84418 -35.52169 -34.85088 -33.39472 -31.36596 -31.10112 -29.23211 -28.45245 -27.42617 -26.82088 -26.04631 -22.90289 -22.82672 -22.04018 -20.85921 -20.02810 -19.07393 -18.32172 -18.18327 -17.84846 -17.35153 -16.79314 -16.61208 -16.21351 -15.91256 -15.89001 -15.54119 -15.35543 -15.02561 -14.69580 -14.44423 -14.39809 -14.23751 -13.62177 -13.58095 -13.38751 -13.22305 -13.16204 -13.02775 -12.89441 -12.86139 -12.77177 -12.70784 -12.50791 -12.33506 -12.15401 -12.08424 -11.54935 -11.33684 -11.21446 -11.13712 -11.05698 -10.85011 -10.72951 -9.53124 -9.23704 -9.17197 -8.62337 -6.31348 0.96287 1.11209 1.31612 1.43768 1.48146 1.71741 1.95251 2.15819 2.54827 2.75654 3.18210 3.57784 3.65303 3.81680 3.85079 3.95878 4.05728 4.15337 4.21606 4.28207 4.32581 4.38727 4.47588 4.54985 4.56264 4.58699 4.62222 4.69671 4.70095 4.72654 4.75753 4.87473 4.88713 4.95640 5.04167 5.11697 5.17695 5.24002 5.35569 5.46888 5.53549 5.75647 6.02156 6.14637 6.16837 6.20717 6.36112 6.40513 6.72407 6.96901 6.97517 7.09710 7.28117 8.34265 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010961 B = 0.004446 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.878337 B = 6296.133991 C = 7311.241269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.103 3.897 3 C -0.172 4.172 4 C 0.089 3.911 5 N -0.619 5.619 6 C 0.521 3.479 7 O -0.569 6.569 8 C -0.065 4.065 9 C -0.188 4.188 10 C -0.090 4.090 11 C -0.241 4.241 12 C -0.117 4.117 13 C -0.192 4.192 14 C 0.097 3.903 15 C -0.479 4.479 16 H 0.066 0.934 17 C 0.040 3.960 18 N -0.824 5.824 19 Si 0.963 3.037 20 H -0.266 1.266 21 H -0.259 1.259 22 H -0.268 1.268 23 C 0.080 3.920 24 C 0.067 3.933 25 H 0.050 0.950 26 C 0.090 3.910 27 O -0.591 6.591 28 O -0.366 6.366 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.037 0.963 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.286 0.714 44 H 0.104 0.896 45 H 0.110 0.890 46 H 0.074 0.926 47 H 0.088 0.912 48 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.608 -10.043 12.844 18.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.063 3.937 3 C -0.230 4.230 4 C -0.033 4.033 5 N -0.354 5.354 6 C 0.312 3.688 7 O -0.447 6.447 8 C -0.105 4.105 9 C -0.190 4.190 10 C -0.108 4.108 11 C -0.260 4.260 12 C -0.135 4.135 13 C -0.212 4.212 14 C 0.095 3.905 15 C -0.509 4.509 16 H 0.084 0.916 17 C -0.175 4.175 18 N -0.450 5.450 19 Si 0.784 3.216 20 H -0.190 1.190 21 H -0.183 1.183 22 H -0.193 1.193 23 C -0.042 4.042 24 C 0.009 3.991 25 H 0.068 0.932 26 C 0.012 3.988 27 O -0.399 6.399 28 O -0.285 6.285 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.132 0.868 38 H 0.113 0.887 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.123 0.877 42 H 0.114 0.886 43 H 0.097 0.903 44 H 0.123 0.877 45 H 0.129 0.871 46 H 0.092 0.908 47 H 0.106 0.894 48 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -9.978 -9.346 11.927 18.143 hybrid contribution 0.466 0.963 0.192 1.087 sum -9.512 -8.383 12.119 17.539 Atomic orbital electron populations 1.21698 0.89518 1.03933 1.03504 1.21832 0.96627 0.90514 0.84760 1.22338 1.00802 0.97210 1.02641 1.22227 0.80306 1.01851 0.98965 1.48188 1.06597 1.63925 1.16684 1.21208 0.89812 0.75694 0.82125 1.90651 1.77975 1.45182 1.30902 1.20286 0.89117 1.02978 0.98100 1.19525 1.08888 0.93152 0.97452 1.20728 0.98189 0.98215 0.93673 1.20720 1.09997 0.95326 0.99926 1.20955 1.00245 0.94299 0.98034 1.21290 1.06516 0.98584 0.94805 1.17705 0.89278 0.91722 0.91777 1.19559 1.14465 1.02890 1.14008 0.91603 1.26563 0.93702 1.01032 0.96155 1.69873 1.10284 1.27553 1.37308 0.85451 0.79437 0.77943 0.78738 1.19007 1.18311 1.19278 1.22505 1.00830 0.98958 0.81935 1.22606 0.82206 0.99469 0.94867 0.93185 1.22126 0.99173 0.93932 0.83537 1.86490 1.82419 1.53060 1.17961 1.88004 1.20587 1.76569 1.43349 0.91055 0.89949 0.90411 0.94341 0.91891 0.91210 0.90355 0.89316 0.86799 0.88726 0.86493 0.86619 0.87673 0.88606 0.90345 0.87747 0.87149 0.90811 0.89398 0.75026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 8.85 71.98 0.64 -1.85 16 2 C 0.10 2.60 1.11 -10.84 -0.01 2.59 16 3 C -0.17 -5.09 8.08 71.98 0.58 -4.51 16 4 C 0.09 2.49 5.27 86.22 0.45 2.94 16 5 N -0.62 -18.76 2.55 -818.17 -2.08 -20.85 16 6 C 0.52 20.53 7.34 87.66 0.64 21.17 16 7 O -0.57 -28.01 15.50 -3.04 -0.05 -28.06 16 8 C -0.07 -2.50 3.56 29.10 0.10 -2.40 16 9 C -0.19 -9.05 4.43 -19.41 -0.09 -9.14 16 10 C -0.09 -4.03 9.66 22.22 0.21 -3.81 16 11 C -0.24 -10.92 10.05 22.46 0.23 -10.70 16 12 C -0.12 -5.78 10.02 22.22 0.22 -5.56 16 13 C -0.19 -10.70 8.68 22.73 0.20 -10.50 16 14 C 0.10 5.36 5.56 -21.29 -0.12 5.24 16 15 C -0.48 -26.13 8.14 23.46 0.19 -25.94 16 16 H 0.07 3.55 6.68 -2.91 -0.02 3.53 16 17 C 0.04 2.08 5.16 85.26 0.44 2.52 16 18 N -0.82 -43.91 10.97 21.83 0.24 -43.67 16 19 Si 0.96 39.99 29.59 68.60 2.03 42.02 16 20 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 21 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 22 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 23 C 0.08 1.76 5.83 86.35 0.50 2.26 16 24 C 0.07 1.56 2.67 30.69 0.08 1.64 16 25 H 0.05 1.44 6.26 -2.39 -0.01 1.42 16 26 C 0.09 1.46 6.71 71.98 0.48 1.94 16 27 O -0.59 -11.18 13.63 -144.70 -1.97 -13.15 16 28 O -0.37 -9.32 9.84 -144.70 -1.42 -10.74 16 29 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.04 1.32 6.12 -2.39 -0.01 1.30 16 33 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.08 2.55 7.07 -2.39 -0.02 2.53 16 36 H 0.09 2.10 8.13 -2.39 -0.02 2.08 16 37 H 0.11 3.38 7.93 -2.39 -0.02 3.36 16 38 H 0.09 3.62 6.58 -2.39 -0.02 3.60 16 39 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 40 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 41 H 0.11 4.62 8.06 -2.91 -0.02 4.59 16 42 H 0.10 5.58 6.22 -2.91 -0.02 5.56 16 43 H 0.29 13.81 8.30 -92.71 -0.77 13.04 16 44 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.11 2.18 6.05 -2.39 -0.01 2.17 16 46 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 48 H 0.40 3.32 9.12 -74.05 -0.68 2.65 16 Total: -1.00 -74.26 382.29 1.80 -72.46 By element: Atomic # 1 Polarization: 35.78 SS G_CDS: 0.30 Total: 36.08 kcal Atomic # 6 Polarization: -38.86 SS G_CDS: 4.76 Total: -34.09 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: -1.84 Total: -64.51 kcal Atomic # 8 Polarization: -48.51 SS G_CDS: -3.44 Total: -51.95 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Total: -74.26 1.80 -72.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817627749.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.888 kcal (2) G-P(sol) polarization free energy of solvation -74.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds