Wall clock time and date at job start Tue Mar 31 2020 19:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.46999 * 2 1 4 4 C 1.52996 * 109.47336 * 119.99754 * 2 1 3 5 5 C 1.53008 * 109.47010 * 171.74799 * 4 2 1 6 6 H 1.08997 * 109.46843 * 54.36346 * 5 4 2 7 7 C 1.53005 * 109.46905 * 174.36127 * 5 4 2 8 8 N 1.46497 * 109.46991 * 185.00548 * 7 5 4 9 9 C 1.34781 * 120.00114 * 180.02562 * 8 7 5 10 10 O 1.21284 * 119.99554 * 359.97438 * 9 8 7 11 11 C 1.50696 * 119.99881 * 179.97438 * 9 8 7 12 12 C 1.50703 * 109.46836 * 179.97438 * 11 9 8 13 13 C 1.37639 * 120.12667 * 264.99656 * 12 11 9 14 14 C 1.38612 * 120.24844 * 179.97438 * 13 12 11 15 15 C 1.38660 * 120.50024 * 0.02822 * 14 13 12 16 16 C 1.37594 * 120.24871 * 0.02562 * 15 14 13 17 17 C 1.40697 * 120.12732 * 84.72446 * 12 11 9 18 18 C 1.41397 * 120.24415 * 359.97438 * 17 12 11 19 19 H 1.07993 * 120.00154 * 333.72930 * 18 17 12 20 20 C 1.39952 * 119.99732 * 153.72657 * 18 17 12 21 21 N 1.30818 * 119.99736 * 157.02035 * 20 18 17 22 22 Si 1.86799 * 120.00078 * 337.01901 * 20 18 17 23 23 H 1.48493 * 109.47141 * 90.68443 * 22 20 18 24 24 H 1.48500 * 109.46869 * 210.68460 * 22 20 18 25 25 H 1.48504 * 109.47107 * 330.68264 * 22 20 18 26 26 C 1.50692 * 109.47228 * 294.35915 * 5 4 2 27 27 O 1.20823 * 120.00157 * 326.71168 * 26 5 4 28 28 O 1.34231 * 120.00014 * 146.70648 * 26 5 4 29 29 H 1.08989 * 109.46994 * 64.35513 * 1 2 3 30 30 H 1.09000 * 109.46742 * 184.35953 * 1 2 3 31 31 H 1.09000 * 109.47110 * 304.35538 * 1 2 3 32 32 H 1.08998 * 109.47064 * 240.00266 * 2 1 3 33 33 H 1.08999 * 109.46761 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.47012 * 300.00369 * 3 2 1 35 35 H 1.08998 * 109.46995 * 60.00224 * 3 2 1 36 36 H 1.08995 * 109.47519 * 291.75296 * 4 2 1 37 37 H 1.09001 * 109.47210 * 51.75390 * 4 2 1 38 38 H 1.09008 * 109.46798 * 305.00155 * 7 5 4 39 39 H 1.08994 * 109.47293 * 65.00061 * 7 5 4 40 40 H 0.97003 * 120.00181 * 359.97438 * 8 7 5 41 41 H 1.08996 * 109.46940 * 299.99442 * 11 9 8 42 42 H 1.08994 * 109.47430 * 59.99647 * 11 9 8 43 43 H 1.07997 * 119.87679 * 0.02562 * 13 12 11 44 44 H 1.07994 * 119.75431 * 179.97438 * 14 13 12 45 45 H 1.08000 * 119.87320 * 179.97438 * 15 14 13 46 46 H 1.08001 * 120.12785 * 179.97438 * 16 15 14 47 47 H 0.97003 * 119.99866 * 179.97438 * 21 20 18 48 48 H 0.96696 * 117.00453 * 180.02562 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5561 -0.9029 1.1499 6 1 4.0270 0.0639 0.9727 7 6 4.0853 -1.4961 2.4573 8 7 5.5481 -1.5591 2.4081 9 6 6.2371 -2.0507 3.4569 10 8 5.6461 -2.4405 4.4416 11 6 7.7418 -2.1161 3.4060 12 6 8.2631 -2.7002 4.6937 13 6 8.6623 -1.8706 5.7168 14 6 9.1417 -2.4051 6.9025 15 6 9.2253 -3.7787 7.0722 16 6 8.8328 -4.6270 6.0624 17 6 8.3381 -4.0956 4.8568 18 6 7.9248 -4.9577 3.8150 19 1 7.1883 -4.6248 3.0988 20 6 8.4703 -6.2424 3.7120 21 7 7.8161 -7.1820 3.0792 22 14 10.1327 -6.6154 4.4781 23 1 9.9398 -7.0944 5.8704 24 1 10.8191 -7.6658 3.6839 25 1 10.9606 -5.3827 4.4888 26 6 3.8767 -1.8345 0.0097 27 8 3.1216 -2.7372 -0.2636 28 8 5.0012 -1.6613 -0.7025 29 1 -0.3633 0.4447 -0.9263 30 1 -0.3633 -1.0247 0.0781 31 1 -0.3633 0.5799 0.8484 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9564 0.8900 36 1 1.8022 -0.1294 2.1331 37 1 1.5614 -1.6974 1.3261 38 1 3.7766 -0.8674 3.2926 39 1 3.6826 -2.5002 2.5900 40 1 6.0207 -1.2477 1.6203 41 1 8.0501 -2.7446 2.5705 42 1 8.1448 -1.1121 3.2734 43 1 8.6012 -0.7992 5.5957 44 1 9.4532 -1.7468 7.6999 45 1 9.6008 -4.1843 8.0001 46 1 8.8992 -5.6966 6.1965 47 1 8.1943 -8.0723 3.0075 48 1 5.1638 -2.2836 -1.4246 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833478124.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:19 Heat of formation + Delta-G solvation = -138.837869 kcal Electronic energy + Delta-G solvation = -28807.412205 eV Core-core repulsion = 24825.789831 eV Total energy + Delta-G solvation = -3981.622374 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.76418 -39.19053 -37.65016 -37.22487 -36.07267 -34.74900 -33.58811 -32.08364 -31.35630 -30.26250 -27.51160 -27.39459 -25.81627 -24.90773 -24.33497 -21.42430 -21.07430 -20.50500 -19.96453 -19.32098 -18.35834 -17.31771 -16.96984 -16.67491 -16.03039 -15.64574 -15.53978 -15.04083 -14.88638 -14.39808 -14.19994 -14.05035 -13.86703 -13.64480 -13.29640 -13.04677 -12.70541 -12.58721 -12.50757 -12.45638 -12.15778 -12.01751 -11.84641 -11.80959 -11.60869 -11.35437 -11.09531 -11.07529 -10.97193 -10.86749 -10.77225 -10.66303 -10.53345 -10.26534 -9.70025 -9.47191 -9.20224 -9.02266 -8.76507 -7.56477 -7.47361 -6.94946 -4.42815 2.07840 2.61713 2.76995 2.85123 3.14508 3.21530 3.32813 3.34603 3.52110 3.99864 4.32304 4.44114 4.53908 4.59030 4.79879 4.81334 4.96953 5.18653 5.34046 5.34353 5.38032 5.42669 5.55728 5.59840 5.63594 5.66549 5.73656 5.80576 5.89605 5.93181 6.02825 6.04207 6.07061 6.14652 6.25903 6.33541 6.39589 6.63762 6.71773 6.79663 6.99815 7.25101 7.49580 7.72516 7.75851 7.81025 7.91673 7.96931 8.19574 8.39652 8.73953 8.84326 8.86165 10.06692 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016076 B = 0.002940 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.324480 B = 9522.056035 C =10573.148042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 C -0.152 4.152 4 C -0.104 4.104 5 C -0.091 4.091 6 H 0.110 0.890 7 C 0.130 3.870 8 N -0.749 5.749 9 C 0.517 3.483 10 O -0.518 6.518 11 C -0.073 4.073 12 C -0.171 4.171 13 C -0.066 4.066 14 C -0.248 4.248 15 C -0.077 4.077 16 C -0.243 4.243 17 C 0.110 3.890 18 C -0.442 4.442 19 H 0.088 0.912 20 C 0.086 3.914 21 N -0.801 5.801 22 Si 0.913 3.087 23 H -0.268 1.268 24 H -0.293 1.293 25 H -0.247 1.247 26 C 0.484 3.516 27 O -0.507 6.507 28 O -0.517 6.517 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.400 0.600 41 H 0.099 0.901 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.101 0.899 47 H 0.285 0.715 48 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.436 14.435 -8.992 18.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C -0.209 4.209 4 C -0.142 4.142 5 C -0.111 4.111 6 H 0.128 0.872 7 C 0.006 3.994 8 N -0.405 5.405 9 C 0.304 3.696 10 O -0.391 6.391 11 C -0.112 4.112 12 C -0.173 4.173 13 C -0.085 4.085 14 C -0.268 4.268 15 C -0.095 4.095 16 C -0.262 4.262 17 C 0.107 3.893 18 C -0.470 4.470 19 H 0.106 0.894 20 C -0.134 4.134 21 N -0.424 5.424 22 Si 0.740 3.260 23 H -0.194 1.194 24 H -0.221 1.221 25 H -0.170 1.170 26 C 0.326 3.674 27 O -0.394 6.394 28 O -0.329 6.329 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.234 0.766 41 H 0.117 0.883 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.119 0.881 47 H 0.095 0.905 48 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -8.230 13.901 -8.146 18.092 hybrid contribution 0.906 -0.714 -0.631 1.315 sum -7.324 13.187 -8.777 17.451 Atomic orbital electron populations 1.21803 0.94631 1.02119 1.01734 1.21158 0.96464 0.96235 0.97965 1.21944 1.01167 0.95773 1.02030 1.21642 0.90851 1.02688 0.99052 1.21428 0.99363 0.98930 0.91366 0.87163 1.21201 0.81716 1.02155 0.94372 1.46185 1.06075 1.67753 1.20440 1.21151 0.90746 0.75802 0.81903 1.90699 1.71066 1.45178 1.32187 1.20280 0.89920 1.01255 0.99789 1.19011 1.10253 0.93243 0.94810 1.20407 0.97785 0.96907 0.93368 1.20301 1.13655 0.94377 0.98441 1.20584 0.98191 0.93728 0.97004 1.21078 1.11798 0.98058 0.95310 1.17453 0.88574 0.91357 0.91898 1.19415 1.20753 0.95771 1.11096 0.89444 1.26204 0.99283 0.95032 0.92874 1.69755 1.36590 1.02794 1.33285 0.86370 0.82025 0.79129 0.78507 1.19438 1.22050 1.17037 1.23339 0.77960 0.83934 0.82209 1.90730 1.49180 1.32154 1.67330 1.84501 1.42611 1.58984 1.46832 0.92717 0.92358 0.92477 0.91450 0.92446 0.92647 0.92275 0.89645 0.89752 0.89846 0.90733 0.76608 0.88288 0.90261 0.89167 0.89117 0.89122 0.88092 0.90506 0.72910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.19 37.16 0.34 -0.72 16 2 C -0.10 -0.79 2.82 -90.62 -0.26 -1.05 16 3 C -0.15 -1.00 9.00 37.16 0.33 -0.67 16 4 C -0.10 -0.92 3.88 -26.73 -0.10 -1.03 16 5 C -0.09 -0.90 2.25 -91.77 -0.21 -1.10 16 6 H 0.11 0.86 6.46 -51.93 -0.34 0.53 16 7 C 0.13 1.69 5.05 -4.04 -0.02 1.67 16 8 N -0.75 -10.90 5.35 -60.29 -0.32 -11.22 16 9 C 0.52 10.05 7.44 -10.99 -0.08 9.96 16 10 O -0.52 -12.49 16.03 5.55 0.09 -12.40 16 11 C -0.07 -1.38 5.18 -29.04 -0.15 -1.54 16 12 C -0.17 -3.98 4.43 -103.91 -0.46 -4.44 16 13 C -0.07 -1.45 9.66 -39.66 -0.38 -1.83 16 14 C -0.25 -5.44 10.05 -39.29 -0.39 -5.83 16 15 C -0.08 -1.77 10.02 -39.66 -0.40 -2.16 16 16 C -0.24 -6.19 7.42 -38.87 -0.29 -6.47 16 17 C 0.11 2.87 5.16 -106.82 -0.55 2.32 16 18 C -0.44 -12.04 8.63 -37.74 -0.33 -12.37 16 19 H 0.09 2.50 6.84 -52.49 -0.36 2.14 16 20 C 0.09 2.27 5.35 -17.34 -0.09 2.18 16 21 N -0.80 -21.59 13.93 55.55 0.77 -20.81 16 22 Si 0.91 21.07 24.71 -169.99 -4.20 16.87 16 23 H -0.27 -6.11 6.39 56.52 0.36 -5.75 16 24 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.25 -5.77 7.11 56.52 0.40 -5.37 16 26 C 0.48 5.68 5.91 36.00 0.21 5.89 16 27 O -0.51 -7.61 16.71 -18.75 -0.31 -7.93 16 28 O -0.52 -4.83 12.88 -39.26 -0.51 -5.33 16 29 H 0.05 0.36 8.14 -51.94 -0.42 -0.06 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.63 7.04 -51.93 -0.37 0.26 16 33 H 0.06 0.37 6.57 -51.93 -0.34 0.03 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 0.63 8.13 -51.93 -0.42 0.21 16 37 H 0.08 0.88 7.64 -51.93 -0.40 0.48 16 38 H 0.08 1.03 8.14 -51.92 -0.42 0.61 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.40 4.75 7.75 -40.82 -0.32 4.43 16 41 H 0.10 1.88 7.08 -51.93 -0.37 1.52 16 42 H 0.08 1.21 8.05 -51.93 -0.42 0.79 16 43 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 44 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 45 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 46 H 0.10 2.57 4.44 -52.49 -0.23 2.33 16 47 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 48 H 0.41 2.52 9.10 45.56 0.41 2.93 16 LS Contribution 390.21 15.07 5.88 5.88 Total: -1.00 -33.97 390.21 -7.97 -41.94 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -6.54 Total: 10.21 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -2.82 Total: -17.20 kcal Atomic # 7 Polarization: -32.48 SS G_CDS: 0.45 Total: -32.03 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.73 Total: -25.66 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.20 Total: 16.87 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.97 -7.97 -41.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833478124.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.899 kcal (2) G-P(sol) polarization free energy of solvation -33.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds