Wall clock time and date at job start Tue Mar 31 2020 19:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.46999 * 2 1 4 4 C 1.52996 * 109.47336 * 119.99754 * 2 1 3 5 5 C 1.53008 * 109.47010 * 171.74799 * 4 2 1 6 6 H 1.08997 * 109.46843 * 54.36346 * 5 4 2 7 7 C 1.53005 * 109.46905 * 174.36127 * 5 4 2 8 8 N 1.46497 * 109.46991 * 185.00548 * 7 5 4 9 9 C 1.34781 * 120.00114 * 180.02562 * 8 7 5 10 10 O 1.21284 * 119.99554 * 359.97438 * 9 8 7 11 11 C 1.50696 * 119.99881 * 179.97438 * 9 8 7 12 12 C 1.50703 * 109.46836 * 179.97438 * 11 9 8 13 13 C 1.37639 * 120.12667 * 264.99656 * 12 11 9 14 14 C 1.38612 * 120.24844 * 179.97438 * 13 12 11 15 15 C 1.38660 * 120.50024 * 0.02822 * 14 13 12 16 16 C 1.37594 * 120.24871 * 0.02562 * 15 14 13 17 17 C 1.40697 * 120.12732 * 84.72446 * 12 11 9 18 18 C 1.41397 * 120.24415 * 359.97438 * 17 12 11 19 19 H 1.07993 * 120.00154 * 333.72930 * 18 17 12 20 20 C 1.39952 * 119.99732 * 153.72657 * 18 17 12 21 21 N 1.30818 * 119.99736 * 157.02035 * 20 18 17 22 22 Si 1.86799 * 120.00078 * 337.01901 * 20 18 17 23 23 H 1.48493 * 109.47141 * 90.68443 * 22 20 18 24 24 H 1.48500 * 109.46869 * 210.68460 * 22 20 18 25 25 H 1.48504 * 109.47107 * 330.68264 * 22 20 18 26 26 C 1.50692 * 109.47228 * 294.35915 * 5 4 2 27 27 O 1.20823 * 120.00157 * 326.71168 * 26 5 4 28 28 O 1.34231 * 120.00014 * 146.70648 * 26 5 4 29 29 H 1.08989 * 109.46994 * 64.35513 * 1 2 3 30 30 H 1.09000 * 109.46742 * 184.35953 * 1 2 3 31 31 H 1.09000 * 109.47110 * 304.35538 * 1 2 3 32 32 H 1.08998 * 109.47064 * 240.00266 * 2 1 3 33 33 H 1.08999 * 109.46761 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.47012 * 300.00369 * 3 2 1 35 35 H 1.08998 * 109.46995 * 60.00224 * 3 2 1 36 36 H 1.08995 * 109.47519 * 291.75296 * 4 2 1 37 37 H 1.09001 * 109.47210 * 51.75390 * 4 2 1 38 38 H 1.09008 * 109.46798 * 305.00155 * 7 5 4 39 39 H 1.08994 * 109.47293 * 65.00061 * 7 5 4 40 40 H 0.97003 * 120.00181 * 359.97438 * 8 7 5 41 41 H 1.08996 * 109.46940 * 299.99442 * 11 9 8 42 42 H 1.08994 * 109.47430 * 59.99647 * 11 9 8 43 43 H 1.07997 * 119.87679 * 0.02562 * 13 12 11 44 44 H 1.07994 * 119.75431 * 179.97438 * 14 13 12 45 45 H 1.08000 * 119.87320 * 179.97438 * 15 14 13 46 46 H 1.08001 * 120.12785 * 179.97438 * 16 15 14 47 47 H 0.97003 * 119.99866 * 179.97438 * 21 20 18 48 48 H 0.96696 * 117.00453 * 180.02562 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5561 -0.9029 1.1499 6 1 4.0270 0.0639 0.9727 7 6 4.0853 -1.4961 2.4573 8 7 5.5481 -1.5591 2.4081 9 6 6.2371 -2.0507 3.4569 10 8 5.6461 -2.4405 4.4416 11 6 7.7418 -2.1161 3.4060 12 6 8.2631 -2.7002 4.6937 13 6 8.6623 -1.8706 5.7168 14 6 9.1417 -2.4051 6.9025 15 6 9.2253 -3.7787 7.0722 16 6 8.8328 -4.6270 6.0624 17 6 8.3381 -4.0956 4.8568 18 6 7.9248 -4.9577 3.8150 19 1 7.1883 -4.6248 3.0988 20 6 8.4703 -6.2424 3.7120 21 7 7.8161 -7.1820 3.0792 22 14 10.1327 -6.6154 4.4781 23 1 9.9398 -7.0944 5.8704 24 1 10.8191 -7.6658 3.6839 25 1 10.9606 -5.3827 4.4888 26 6 3.8767 -1.8345 0.0097 27 8 3.1216 -2.7372 -0.2636 28 8 5.0012 -1.6613 -0.7025 29 1 -0.3633 0.4447 -0.9263 30 1 -0.3633 -1.0247 0.0781 31 1 -0.3633 0.5799 0.8484 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9564 0.8900 36 1 1.8022 -0.1294 2.1331 37 1 1.5614 -1.6974 1.3261 38 1 3.7766 -0.8674 3.2926 39 1 3.6826 -2.5002 2.5900 40 1 6.0207 -1.2477 1.6203 41 1 8.0501 -2.7446 2.5705 42 1 8.1448 -1.1121 3.2734 43 1 8.6012 -0.7992 5.5957 44 1 9.4532 -1.7468 7.6999 45 1 9.6008 -4.1843 8.0001 46 1 8.8992 -5.6966 6.1965 47 1 8.1943 -8.0723 3.0075 48 1 5.1638 -2.2836 -1.4246 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833478124.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:18 Heat of formation + Delta-G solvation = -161.633038 kcal Electronic energy + Delta-G solvation = -28808.400677 eV Core-core repulsion = 24825.789831 eV Total energy + Delta-G solvation = -3982.610847 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.73979 -40.71991 -39.29634 -38.08327 -37.01871 -35.93070 -35.51714 -33.63168 -32.55875 -32.11886 -28.92911 -28.01376 -27.09985 -26.36267 -25.51783 -23.22048 -22.26251 -21.76121 -21.05344 -20.59228 -19.30477 -19.23635 -18.05727 -17.86772 -17.60572 -17.07027 -16.62649 -16.52173 -16.10672 -15.73245 -15.57899 -15.39332 -15.02568 -14.77077 -14.53122 -14.44599 -14.35317 -13.85754 -13.65245 -13.62517 -13.24117 -13.11289 -13.06839 -12.87765 -12.70799 -12.63050 -12.57487 -12.50146 -12.46494 -12.02283 -11.78947 -11.66619 -11.55121 -11.54028 -11.45087 -11.32178 -10.89884 -10.80048 -10.11194 -9.41773 -9.27781 -8.90816 -6.42917 0.81952 0.92677 1.11601 1.26725 1.39963 1.49203 1.80317 2.03000 2.12486 2.25436 2.63163 3.45719 3.55224 3.67252 3.89510 4.04790 4.07236 4.12916 4.26226 4.32365 4.38897 4.43005 4.49597 4.55002 4.62470 4.71229 4.74343 4.77313 4.82667 4.87107 4.96223 4.99950 5.01204 5.06224 5.11730 5.18318 5.29193 5.38496 5.41036 5.43875 5.49522 5.59341 5.70649 5.89088 5.98482 6.08410 6.30054 6.47798 6.60077 6.81766 6.91865 6.93205 7.39304 8.16748 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016076 B = 0.002940 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.324480 B = 9522.056035 C =10573.148042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 C -0.149 4.149 4 C -0.103 4.103 5 C -0.079 4.079 6 H 0.142 0.858 7 C 0.130 3.870 8 N -0.728 5.728 9 C 0.516 3.484 10 O -0.573 6.573 11 C -0.074 4.074 12 C -0.177 4.177 13 C -0.075 4.075 14 C -0.236 4.236 15 C -0.089 4.089 16 C -0.268 4.268 17 C 0.084 3.916 18 C -0.470 4.470 19 H 0.056 0.944 20 C 0.049 3.951 21 N -0.845 5.845 22 Si 0.967 3.033 23 H -0.266 1.266 24 H -0.277 1.277 25 H -0.252 1.252 26 C 0.482 3.518 27 O -0.547 6.547 28 O -0.509 6.509 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.105 0.895 37 H 0.061 0.939 38 H 0.097 0.903 39 H 0.040 0.960 40 H 0.415 0.585 41 H 0.093 0.907 42 H 0.126 0.874 43 H 0.129 0.871 44 H 0.127 0.873 45 H 0.119 0.881 46 H 0.091 0.909 47 H 0.292 0.708 48 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.154 17.868 -8.367 20.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 C -0.206 4.206 4 C -0.141 4.141 5 C -0.098 4.098 6 H 0.160 0.840 7 C 0.006 3.994 8 N -0.383 5.383 9 C 0.304 3.696 10 O -0.451 6.451 11 C -0.113 4.113 12 C -0.178 4.178 13 C -0.093 4.093 14 C -0.255 4.255 15 C -0.107 4.107 16 C -0.288 4.288 17 C 0.081 3.919 18 C -0.499 4.499 19 H 0.074 0.926 20 C -0.166 4.166 21 N -0.471 5.471 22 Si 0.791 3.209 23 H -0.192 1.192 24 H -0.204 1.204 25 H -0.175 1.175 26 C 0.326 3.674 27 O -0.437 6.437 28 O -0.322 6.322 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.124 0.876 37 H 0.080 0.920 38 H 0.115 0.885 39 H 0.058 0.942 40 H 0.253 0.747 41 H 0.111 0.889 42 H 0.144 0.856 43 H 0.147 0.853 44 H 0.145 0.855 45 H 0.137 0.863 46 H 0.109 0.891 47 H 0.102 0.898 48 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -6.929 17.364 -7.584 20.175 hybrid contribution 0.488 -1.589 -0.774 1.834 sum -6.441 15.774 -8.358 18.978 Atomic orbital electron populations 1.21806 0.94247 1.01621 1.02624 1.21121 0.96828 0.97058 0.96557 1.21932 1.01458 0.94429 1.02823 1.21666 0.89855 1.02060 1.00548 1.21436 1.00210 0.99413 0.88779 0.84003 1.21250 0.80448 1.00871 0.96792 1.45962 1.06827 1.65899 1.19650 1.21195 0.91040 0.75286 0.82058 1.90675 1.72006 1.47896 1.34564 1.20346 0.89821 1.03405 0.97737 1.19511 1.08892 0.92537 0.96877 1.20895 0.96740 0.98868 0.92779 1.20858 1.10968 0.94402 0.99239 1.20960 0.97950 0.94348 0.97447 1.21219 1.13192 0.98237 0.96111 1.17725 0.89456 0.92858 0.91859 1.19337 1.21667 0.97071 1.11873 0.92618 1.26852 1.01822 0.94669 0.93284 1.69789 1.38154 1.03484 1.35692 0.85540 0.78452 0.78960 0.77990 1.19231 1.20372 1.17507 1.23747 0.77823 0.83423 0.82424 1.90722 1.50559 1.33848 1.68564 1.84463 1.41324 1.59274 1.47144 0.92007 0.93644 0.91349 0.93139 0.91935 0.92125 0.91271 0.87634 0.92045 0.88490 0.94162 0.74747 0.88866 0.85609 0.85294 0.85459 0.86318 0.89073 0.89777 0.71244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.19 71.98 0.66 -1.33 16 2 C -0.10 -1.43 2.82 -10.79 -0.03 -1.46 16 3 C -0.15 -1.56 9.00 71.98 0.65 -0.92 16 4 C -0.10 -1.74 3.88 30.60 0.12 -1.62 16 5 C -0.08 -1.46 2.25 -11.54 -0.03 -1.48 16 6 H 0.14 1.75 6.46 -2.39 -0.02 1.74 16 7 C 0.13 3.35 5.05 86.38 0.44 3.78 16 8 N -0.73 -20.45 5.35 -463.05 -2.48 -22.92 16 9 C 0.52 19.87 7.44 87.65 0.65 20.52 16 10 O -0.57 -28.12 16.03 -3.04 -0.05 -28.17 16 11 C -0.07 -2.71 5.18 29.10 0.15 -2.55 16 12 C -0.18 -7.99 4.43 -19.40 -0.09 -8.08 16 13 C -0.07 -3.00 9.66 22.22 0.21 -2.79 16 14 C -0.24 -9.40 10.05 22.46 0.23 -9.18 16 15 C -0.09 -3.89 10.02 22.22 0.22 -3.66 16 16 C -0.27 -13.60 7.42 22.73 0.17 -13.43 16 17 C 0.08 4.40 5.16 -21.29 -0.11 4.29 16 18 C -0.47 -26.78 8.63 23.46 0.20 -26.58 16 19 H 0.06 3.40 6.84 -2.91 -0.02 3.38 16 20 C 0.05 2.69 5.35 85.26 0.46 3.14 16 21 N -0.85 -47.74 13.93 21.83 0.30 -47.44 16 22 Si 0.97 44.29 24.71 68.60 1.70 45.98 16 23 H -0.27 -11.95 6.39 99.48 0.64 -11.32 16 24 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 25 H -0.25 -11.53 7.11 99.48 0.71 -10.82 16 26 C 0.48 11.17 5.91 71.23 0.42 11.59 16 27 O -0.55 -17.03 16.71 21.97 0.37 -16.66 16 28 O -0.51 -8.86 12.88 -51.42 -0.66 -9.52 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.92 7.04 -2.39 -0.02 0.90 16 33 H 0.06 0.59 6.57 -2.39 -0.02 0.57 16 34 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.11 1.35 8.13 -2.39 -0.02 1.33 16 37 H 0.06 1.33 7.64 -2.39 -0.02 1.31 16 38 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 39 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.42 9.00 7.75 -92.71 -0.72 8.28 16 41 H 0.09 3.55 7.08 -2.39 -0.02 3.53 16 42 H 0.13 3.36 8.05 -2.39 -0.02 3.34 16 43 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 44 H 0.13 4.15 8.06 -2.91 -0.02 4.12 16 45 H 0.12 4.42 8.06 -2.91 -0.02 4.39 16 46 H 0.09 4.69 4.44 -2.91 -0.01 4.68 16 47 H 0.29 14.86 8.30 -92.71 -0.77 14.09 16 48 H 0.43 4.84 9.10 -74.06 -0.67 4.17 16 Total: -1.00 -77.82 390.21 3.03 -74.79 By element: Atomic # 1 Polarization: 34.15 SS G_CDS: -0.47 Total: 33.68 kcal Atomic # 6 Polarization: -34.07 SS G_CDS: 4.33 Total: -29.75 kcal Atomic # 7 Polarization: -68.19 SS G_CDS: -2.17 Total: -70.36 kcal Atomic # 8 Polarization: -54.00 SS G_CDS: -0.34 Total: -54.34 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.70 Total: 45.98 kcal Total: -77.82 3.03 -74.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833478124.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.840 kcal (2) G-P(sol) polarization free energy of solvation -77.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds