Wall clock time and date at job start Tue Mar 31 2020 17:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34235 * 117.00206 * 2 1 4 4 O 1.20825 * 119.99462 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00177 * 180.02562 * 3 2 1 6 6 C 1.52994 * 109.50561 * 59.91703 * 5 3 2 7 7 C 1.53123 * 109.53205 * 299.81656 * 5 3 2 8 8 C 1.53115 * 109.15441 * 182.38399 * 7 5 3 9 9 C 1.53039 * 109.27882 * 57.66126 * 8 7 5 10 10 N 1.46845 * 109.51946 * 300.81324 * 9 8 7 11 11 C 1.46906 * 110.99629 * 185.84141 * 10 9 8 12 12 C 1.50698 * 109.47437 * 45.79093 * 11 10 9 13 13 C 1.38304 * 119.92957 * 269.73188 * 12 11 10 14 14 C 1.38104 * 120.06705 * 179.72622 * 13 12 11 15 15 C 1.38881 * 119.92994 * 0.53820 * 14 13 12 16 16 O 1.35745 * 120.06946 * 179.74771 * 15 14 13 17 17 C 1.34829 * 116.99938 * 174.44177 * 16 15 14 18 18 H 1.07993 * 120.00037 * 5.06121 * 17 16 15 19 19 C 1.38658 * 119.99757 * 185.05778 * 17 16 15 20 20 N 1.31550 * 120.00187 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99781 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46774 * 60.00298 * 21 19 17 23 23 H 1.48497 * 109.47155 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47034 * 300.00256 * 21 19 17 25 25 C 1.38880 * 119.85910 * 359.73261 * 15 14 13 26 26 C 1.38094 * 119.93655 * 359.97438 * 25 15 14 27 27 C 1.46849 * 111.19622 * 61.74670 * 10 9 8 28 28 H 1.09006 * 109.46908 * 59.99813 * 1 2 3 29 29 H 1.09001 * 109.47556 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47275 * 300.00416 * 1 2 3 31 31 H 1.08999 * 109.47134 * 180.02562 * 6 5 3 32 32 H 1.09000 * 109.47090 * 300.08309 * 6 5 3 33 33 H 1.09005 * 109.47315 * 60.07973 * 6 5 3 34 34 H 1.08998 * 109.52474 * 302.29054 * 7 5 3 35 35 H 1.08994 * 109.51826 * 62.48331 * 7 5 3 36 36 H 1.09010 * 109.49562 * 177.59569 * 8 7 5 37 37 H 1.08998 * 109.51043 * 297.71221 * 8 7 5 38 38 H 1.08999 * 109.46209 * 180.79903 * 9 8 7 39 39 H 1.08996 * 109.46482 * 60.83095 * 9 8 7 40 40 H 1.09000 * 109.47123 * 285.78996 * 11 10 9 41 41 H 1.08999 * 109.47107 * 165.79078 * 11 10 9 42 42 H 1.08001 * 119.96839 * 359.97438 * 13 12 11 43 43 H 1.08003 * 120.03457 * 180.26798 * 14 13 12 44 44 H 0.97000 * 119.99880 * 179.97438 * 20 19 17 45 45 H 1.08002 * 120.03210 * 179.97438 * 25 15 14 46 46 H 1.07997 * 119.96964 * 179.97438 * 26 25 15 47 47 H 1.08999 * 109.46401 * 58.27110 * 27 10 9 48 48 H 1.09008 * 109.45640 * 178.25106 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.1138 0.5800 -1.2488 7 6 4.1156 0.5848 1.2511 8 6 5.6405 0.7218 1.2721 9 6 6.0151 2.2052 1.2353 10 7 5.4673 2.8196 0.0192 11 6 5.9231 4.2092 -0.1196 12 6 7.4041 4.2814 0.1491 13 6 7.8620 4.5085 1.4343 14 6 9.2187 4.5695 1.6848 15 6 10.1235 4.4138 0.6427 16 8 11.4576 4.4784 0.8848 17 6 12.2810 4.2049 -0.1472 18 1 11.8730 4.0291 -1.1315 19 6 13.6516 4.1495 0.0553 20 7 14.1485 4.3633 1.2544 21 14 14.7924 3.7713 -1.3748 22 1 14.6268 4.8059 -2.4271 23 1 16.1991 3.7707 -0.8990 24 1 14.4583 2.4373 -1.9351 25 6 9.6604 4.1916 -0.6477 26 6 8.3026 4.1255 -0.8907 27 6 4.0010 2.7422 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 5.2023 0.6370 -1.2485 32 1 3.8038 -0.4650 -1.2484 33 1 3.7252 1.0738 -2.1395 34 1 3.6954 1.0548 2.1403 35 1 3.8449 -0.4708 1.2335 36 1 6.0339 0.2696 2.1826 37 1 6.0632 0.2180 0.4029 38 1 7.1004 2.3058 1.2358 39 1 5.6038 2.7055 2.1119 40 1 5.3930 4.8386 0.5952 41 1 5.7201 4.5587 -1.1319 42 1 7.1578 4.6342 2.2435 43 1 9.5757 4.7426 2.6893 44 1 15.1073 4.3241 1.3961 45 1 10.3615 4.0705 -1.4602 46 1 7.9419 3.9531 -1.8940 47 1 3.5991 3.2400 0.8820 48 1 3.6235 3.2327 -0.8978 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839666741.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:02 Heat of formation + Delta-G solvation = -86.794501 kcal Electronic energy + Delta-G solvation = -28789.610555 eV Core-core repulsion = 24810.244951 eV Total energy + Delta-G solvation = -3979.365604 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.19097 -39.53255 -38.70258 -36.89070 -36.55397 -34.35127 -32.29269 -31.89670 -30.20919 -29.72359 -28.08872 -27.06949 -26.10139 -25.01456 -24.00873 -22.88827 -22.02012 -21.29538 -20.16857 -18.98818 -17.98245 -17.58673 -17.21997 -16.85722 -16.60850 -15.51580 -15.25022 -14.91090 -14.63484 -14.54773 -14.32288 -14.04338 -13.87706 -13.74056 -13.49433 -13.42360 -13.06880 -12.79756 -12.71064 -12.67808 -12.50801 -12.20884 -11.93199 -11.82516 -11.59416 -11.38897 -11.24868 -11.11999 -11.05621 -10.90118 -10.72519 -10.65229 -10.53791 -10.47492 -10.41973 -10.20701 -9.34097 -8.83901 -8.24886 -8.16941 -7.17388 -6.46078 -4.04811 1.93664 2.18282 2.24217 2.42416 3.12911 3.13734 3.16673 3.95794 4.00077 4.25174 4.43766 4.56245 4.65330 4.76132 4.83767 4.85166 5.01489 5.06748 5.09165 5.19093 5.25218 5.31365 5.36168 5.41872 5.47523 5.59457 5.61131 5.66127 5.73714 5.76126 5.81772 5.83669 5.89987 5.94246 6.02372 6.10763 6.20383 6.24320 6.31041 6.42838 6.68409 6.89412 7.02505 7.09442 7.14155 7.27334 7.40133 7.43788 7.47400 7.81099 7.98958 8.99550 9.69385 10.71740 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026307 B = 0.002215 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.114874 B =12638.031617 C =12861.922558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.355 6.355 3 C 0.472 3.528 4 O -0.508 6.508 5 C -0.045 4.045 6 C -0.133 4.133 7 C -0.108 4.108 8 C -0.117 4.117 9 C 0.047 3.953 10 N -0.528 5.528 11 C 0.115 3.885 12 C -0.186 4.186 13 C -0.068 4.068 14 C -0.194 4.194 15 C 0.156 3.844 16 O -0.177 6.177 17 C -0.392 4.392 18 H 0.092 0.908 19 C 0.039 3.961 20 N -0.862 5.862 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.269 1.269 25 C -0.236 4.236 26 C -0.048 4.048 27 C 0.076 3.924 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.029 0.971 40 H 0.033 0.967 41 H 0.075 0.925 42 H 0.106 0.894 43 H 0.115 0.885 44 H 0.270 0.730 45 H 0.126 0.874 46 H 0.108 0.892 47 H 0.040 0.960 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.449 -8.797 -2.473 24.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.271 6.271 3 C 0.314 3.686 4 O -0.395 6.395 5 C -0.047 4.047 6 C -0.190 4.190 7 C -0.146 4.146 8 C -0.154 4.154 9 C -0.080 4.080 10 N -0.253 5.253 11 C -0.011 4.011 12 C -0.187 4.187 13 C -0.086 4.086 14 C -0.213 4.213 15 C 0.102 3.898 16 O -0.080 6.080 17 C -0.468 4.468 18 H 0.109 0.891 19 C -0.165 4.165 20 N -0.497 5.497 21 Si 0.765 3.235 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.255 4.255 26 C -0.067 4.067 27 C -0.052 4.052 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.115 0.885 39 H 0.047 0.953 40 H 0.051 0.949 41 H 0.094 0.906 42 H 0.124 0.876 43 H 0.134 0.866 44 H 0.080 0.920 45 H 0.144 0.856 46 H 0.126 0.874 47 H 0.058 0.942 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -22.132 -8.692 -2.556 23.914 hybrid contribution -0.096 0.381 -0.026 0.394 sum -22.228 -8.310 -2.583 23.871 Atomic orbital electron populations 1.23270 0.76564 1.03664 1.02508 1.86516 1.23174 1.33474 1.83964 1.23865 0.91887 0.81213 0.71613 1.90659 1.67214 1.36422 1.45251 1.20539 0.85658 0.98674 0.99806 1.21810 1.03755 0.99382 0.94092 1.21652 0.97140 1.00762 0.95015 1.21653 0.93939 0.96898 1.02941 1.22278 1.02071 0.93631 0.90043 1.62008 1.06629 1.18270 1.38378 1.20793 0.92377 0.87156 1.00781 1.19053 0.93455 1.12315 0.93888 1.20499 0.94175 0.98521 0.95441 1.20167 0.91780 1.11369 0.97982 1.19398 0.85408 0.92228 0.92762 1.83974 1.10639 1.75445 1.37981 1.21281 0.87080 1.49756 0.88664 0.89073 1.25292 0.96478 0.96659 0.98084 1.70026 1.13511 1.45240 1.20945 0.85786 0.78718 0.79285 0.79684 1.19501 1.20300 1.19457 1.21157 0.95719 1.11402 0.97231 1.20569 0.92262 0.96290 0.97585 1.21868 0.88726 0.92583 1.02005 0.91925 0.88071 0.91986 0.88996 0.91996 0.92508 0.91914 0.90493 0.90945 0.90316 0.88526 0.95253 0.94883 0.90638 0.87561 0.86648 0.91962 0.85613 0.87378 0.94217 0.90086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.42 10.40 -39.27 -0.41 -3.82 16 3 C 0.47 5.28 6.56 36.01 0.24 5.51 16 4 O -0.51 -6.93 15.73 -18.75 -0.29 -7.23 16 5 C -0.05 -0.46 0.71 -155.58 -0.11 -0.57 16 6 C -0.13 -1.25 7.97 37.15 0.30 -0.95 16 7 C -0.11 -1.01 4.72 -26.61 -0.13 -1.14 16 8 C -0.12 -1.19 5.74 -26.65 -0.15 -1.34 16 9 C 0.05 0.59 4.58 -3.83 -0.02 0.57 16 10 N -0.53 -6.55 4.08 -236.11 -0.96 -7.52 16 11 C 0.12 1.55 5.43 -4.97 -0.03 1.52 16 12 C -0.19 -3.02 4.12 -104.57 -0.43 -3.45 16 13 C -0.07 -1.15 7.80 -39.61 -0.31 -1.46 16 14 C -0.19 -3.96 9.99 -39.39 -0.39 -4.36 16 15 C 0.16 3.68 6.65 -39.11 -0.26 3.42 16 16 O -0.18 -4.99 9.76 0.07 0.00 -4.99 16 17 C -0.39 -10.80 9.49 30.89 0.29 -10.51 16 18 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -25.07 13.67 55.48 0.76 -24.32 16 21 Si 0.94 20.32 29.55 -169.99 -5.02 15.29 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 23 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 25 C -0.24 -4.98 9.17 -39.40 -0.36 -5.34 16 26 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 27 C 0.08 0.88 3.44 -3.83 -0.01 0.87 16 28 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 31 H 0.09 0.93 6.01 -51.93 -0.31 0.62 16 32 H 0.06 0.52 8.11 -51.93 -0.42 0.09 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 37 H 0.08 0.81 6.58 -51.93 -0.34 0.47 16 38 H 0.10 1.42 5.65 -51.93 -0.29 1.13 16 39 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.03 0.43 8.02 -51.93 -0.42 0.01 16 41 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 42 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 43 H 0.12 2.31 8.06 -52.48 -0.42 1.88 16 44 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.13 2.68 5.64 -52.49 -0.30 2.39 16 46 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 47 H 0.04 0.49 8.08 -51.93 -0.42 0.07 16 48 H 0.08 0.95 8.10 -51.92 -0.42 0.53 16 LS Contribution 383.69 15.07 5.78 5.78 Total: -1.00 -30.87 383.69 -8.34 -39.21 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -7.40 Total: 3.79 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -0.79 Total: -16.20 kcal Atomic # 7 Polarization: -31.63 SS G_CDS: -0.21 Total: -31.83 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.70 Total: -16.04 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.87 -8.34 -39.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839666741.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.584 kcal (2) G-P(sol) polarization free energy of solvation -30.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds