Wall clock time and date at job start Tue Mar 31 2020 17:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34235 * 117.00206 * 2 1 4 4 O 1.20825 * 119.99462 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00177 * 180.02562 * 3 2 1 6 6 C 1.52994 * 109.50561 * 59.91703 * 5 3 2 7 7 C 1.53123 * 109.53205 * 299.81656 * 5 3 2 8 8 C 1.53115 * 109.15441 * 182.38399 * 7 5 3 9 9 C 1.53039 * 109.27882 * 57.66126 * 8 7 5 10 10 N 1.46845 * 109.51946 * 300.81324 * 9 8 7 11 11 C 1.46906 * 110.99629 * 185.84141 * 10 9 8 12 12 C 1.50698 * 109.47437 * 45.79093 * 11 10 9 13 13 C 1.38304 * 119.92957 * 269.73188 * 12 11 10 14 14 C 1.38104 * 120.06705 * 179.72622 * 13 12 11 15 15 C 1.38881 * 119.92994 * 0.53820 * 14 13 12 16 16 O 1.35745 * 120.06946 * 179.74771 * 15 14 13 17 17 C 1.34829 * 116.99938 * 174.44177 * 16 15 14 18 18 H 1.07993 * 120.00037 * 5.06121 * 17 16 15 19 19 C 1.38658 * 119.99757 * 185.05778 * 17 16 15 20 20 N 1.31550 * 120.00187 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99781 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46774 * 60.00298 * 21 19 17 23 23 H 1.48497 * 109.47155 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47034 * 300.00256 * 21 19 17 25 25 C 1.38880 * 119.85910 * 359.73261 * 15 14 13 26 26 C 1.38094 * 119.93655 * 359.97438 * 25 15 14 27 27 C 1.46849 * 111.19622 * 61.74670 * 10 9 8 28 28 H 1.09006 * 109.46908 * 59.99813 * 1 2 3 29 29 H 1.09001 * 109.47556 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47275 * 300.00416 * 1 2 3 31 31 H 1.08999 * 109.47134 * 180.02562 * 6 5 3 32 32 H 1.09000 * 109.47090 * 300.08309 * 6 5 3 33 33 H 1.09005 * 109.47315 * 60.07973 * 6 5 3 34 34 H 1.08998 * 109.52474 * 302.29054 * 7 5 3 35 35 H 1.08994 * 109.51826 * 62.48331 * 7 5 3 36 36 H 1.09010 * 109.49562 * 177.59569 * 8 7 5 37 37 H 1.08998 * 109.51043 * 297.71221 * 8 7 5 38 38 H 1.08999 * 109.46209 * 180.79903 * 9 8 7 39 39 H 1.08996 * 109.46482 * 60.83095 * 9 8 7 40 40 H 1.09000 * 109.47123 * 285.78996 * 11 10 9 41 41 H 1.08999 * 109.47107 * 165.79078 * 11 10 9 42 42 H 1.08001 * 119.96839 * 359.97438 * 13 12 11 43 43 H 1.08003 * 120.03457 * 180.26798 * 14 13 12 44 44 H 0.97000 * 119.99880 * 179.97438 * 20 19 17 45 45 H 1.08002 * 120.03210 * 179.97438 * 25 15 14 46 46 H 1.07997 * 119.96964 * 179.97438 * 26 25 15 47 47 H 1.08999 * 109.46401 * 58.27110 * 27 10 9 48 48 H 1.09008 * 109.45640 * 178.25106 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.1138 0.5800 -1.2488 7 6 4.1156 0.5848 1.2511 8 6 5.6405 0.7218 1.2721 9 6 6.0151 2.2052 1.2353 10 7 5.4673 2.8196 0.0192 11 6 5.9231 4.2092 -0.1196 12 6 7.4041 4.2814 0.1491 13 6 7.8620 4.5085 1.4343 14 6 9.2187 4.5695 1.6848 15 6 10.1235 4.4138 0.6427 16 8 11.4576 4.4784 0.8848 17 6 12.2810 4.2049 -0.1472 18 1 11.8730 4.0291 -1.1315 19 6 13.6516 4.1495 0.0553 20 7 14.1485 4.3633 1.2544 21 14 14.7924 3.7713 -1.3748 22 1 14.6268 4.8059 -2.4271 23 1 16.1991 3.7707 -0.8990 24 1 14.4583 2.4373 -1.9351 25 6 9.6604 4.1916 -0.6477 26 6 8.3026 4.1255 -0.8907 27 6 4.0010 2.7422 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 5.2023 0.6370 -1.2485 32 1 3.8038 -0.4650 -1.2484 33 1 3.7252 1.0738 -2.1395 34 1 3.6954 1.0548 2.1403 35 1 3.8449 -0.4708 1.2335 36 1 6.0339 0.2696 2.1826 37 1 6.0632 0.2180 0.4029 38 1 7.1004 2.3058 1.2358 39 1 5.6038 2.7055 2.1119 40 1 5.3930 4.8386 0.5952 41 1 5.7201 4.5587 -1.1319 42 1 7.1578 4.6342 2.2435 43 1 9.5757 4.7426 2.6893 44 1 15.1073 4.3241 1.3961 45 1 10.3615 4.0705 -1.4602 46 1 7.9419 3.9531 -1.8940 47 1 3.5991 3.2400 0.8820 48 1 3.6235 3.2327 -0.8978 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839666741.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:01 Heat of formation + Delta-G solvation = -104.543106 kcal Electronic energy + Delta-G solvation = -28790.380192 eV Core-core repulsion = 24810.244951 eV Total energy + Delta-G solvation = -3980.135241 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.03870 -40.92436 -39.96633 -38.32459 -37.50606 -35.47657 -34.22142 -32.78592 -31.77877 -31.14284 -28.70528 -27.87227 -27.71301 -26.56139 -24.88391 -23.93799 -23.58511 -22.42119 -21.46346 -19.94838 -19.70671 -18.81588 -18.38952 -17.97313 -17.37454 -16.54952 -16.50086 -16.36380 -16.14523 -15.71328 -15.45525 -15.23507 -15.20571 -15.05062 -14.62534 -14.51594 -14.36596 -14.12376 -13.91656 -13.62642 -13.50312 -13.35643 -12.97790 -12.94255 -12.84647 -12.71905 -12.44771 -12.31806 -12.15004 -12.11282 -12.06434 -11.89047 -11.80704 -11.55241 -11.32613 -11.15114 -11.11806 -10.75915 -9.73440 -9.29837 -8.83539 -8.45105 -6.12927 0.61960 0.68682 1.09633 1.36570 1.46874 1.52560 1.65896 2.19522 2.76262 3.04922 3.30386 3.43881 3.53831 3.64348 3.79797 3.95283 4.05360 4.10235 4.19701 4.22370 4.27519 4.30623 4.32157 4.45615 4.56706 4.59155 4.63895 4.67030 4.69537 4.71542 4.79131 4.86803 4.90641 5.01111 5.03264 5.07068 5.10996 5.17829 5.20882 5.27811 5.32020 5.36842 5.52973 5.58433 5.74427 5.83427 6.04998 6.08285 6.14676 6.25194 6.66199 6.99737 7.80814 8.77769 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026307 B = 0.002215 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.114874 B =12638.031617 C =12861.922558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.356 6.356 3 C 0.475 3.525 4 O -0.538 6.538 5 C -0.044 4.044 6 C -0.128 4.128 7 C -0.102 4.102 8 C -0.112 4.112 9 C 0.046 3.954 10 N -0.527 5.527 11 C 0.115 3.885 12 C -0.155 4.155 13 C -0.057 4.057 14 C -0.203 4.203 15 C 0.116 3.884 16 O -0.233 6.233 17 C -0.412 4.412 18 H 0.102 0.898 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.017 2.983 22 H -0.258 1.258 23 H -0.273 1.273 24 H -0.257 1.257 25 C -0.242 4.242 26 C -0.046 4.046 27 C 0.081 3.919 28 H 0.061 0.939 29 H 0.132 0.868 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.032 0.968 40 H 0.045 0.955 41 H 0.091 0.909 42 H 0.138 0.862 43 H 0.111 0.889 44 H 0.272 0.728 45 H 0.118 0.882 46 H 0.138 0.862 47 H 0.032 0.968 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.365 -10.182 -3.945 27.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C 0.319 3.681 4 O -0.427 6.427 5 C -0.046 4.046 6 C -0.185 4.185 7 C -0.140 4.140 8 C -0.150 4.150 9 C -0.081 4.081 10 N -0.252 5.252 11 C -0.011 4.011 12 C -0.156 4.156 13 C -0.075 4.075 14 C -0.222 4.222 15 C 0.066 3.934 16 O -0.139 6.139 17 C -0.488 4.488 18 H 0.119 0.881 19 C -0.221 4.221 20 N -0.559 5.559 21 Si 0.836 3.164 22 H -0.182 1.182 23 H -0.197 1.197 24 H -0.181 1.181 25 C -0.261 4.261 26 C -0.065 4.065 27 C -0.047 4.047 28 H 0.080 0.920 29 H 0.151 0.849 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.050 0.950 40 H 0.063 0.937 41 H 0.109 0.891 42 H 0.156 0.844 43 H 0.129 0.871 44 H 0.081 0.919 45 H 0.135 0.865 46 H 0.156 0.844 47 H 0.051 0.949 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -25.119 -10.094 -4.039 27.372 hybrid contribution 0.358 0.782 0.469 0.980 sum -24.761 -9.312 -3.570 26.694 Atomic orbital electron populations 1.23563 0.74926 1.05758 1.02428 1.86502 1.24777 1.32486 1.83411 1.23959 0.92104 0.81224 0.70803 1.90650 1.67881 1.37413 1.46796 1.20526 0.85396 0.97950 1.00707 1.21770 1.03167 1.00048 0.93544 1.21619 0.96241 1.01620 0.94487 1.21617 0.94620 0.95266 1.03488 1.22257 1.00415 0.95330 0.90132 1.61996 1.07400 1.17307 1.38457 1.20834 0.89846 0.88265 1.02163 1.19459 0.95233 1.07971 0.92957 1.20810 0.93004 0.96784 0.96907 1.20381 0.92976 1.11550 0.97337 1.19929 0.84591 0.94199 0.94730 1.83939 1.12570 1.78520 1.38883 1.21767 0.87814 1.49970 0.89243 0.88092 1.26579 0.97967 0.96319 1.01242 1.70176 1.13867 1.48201 1.23649 0.84667 0.76082 0.79699 0.75904 1.18210 1.19742 1.18105 1.21241 0.97281 1.11572 0.96043 1.20877 0.90817 0.95257 0.99527 1.21820 0.87667 0.93617 1.01627 0.92017 0.84947 0.92125 0.89633 0.90762 0.92543 0.91981 0.88957 0.89990 0.90325 0.91020 0.94982 0.93713 0.89081 0.84449 0.87123 0.91899 0.86453 0.84389 0.94930 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.36 -5.89 10.40 -51.46 -0.54 -6.42 16 3 C 0.48 9.53 6.56 71.24 0.47 10.00 16 4 O -0.54 -13.73 15.73 21.97 0.35 -13.39 16 5 C -0.04 -0.79 0.71 -52.88 -0.04 -0.83 16 6 C -0.13 -2.04 7.97 71.98 0.57 -1.46 16 7 C -0.10 -1.62 4.72 30.67 0.14 -1.47 16 8 C -0.11 -2.00 5.74 30.65 0.18 -1.82 16 9 C 0.05 1.03 4.58 86.33 0.40 1.43 16 10 N -0.53 -11.51 4.08 -900.92 -3.68 -15.19 16 11 C 0.12 2.69 5.43 85.56 0.46 3.15 16 12 C -0.16 -4.64 4.12 -19.83 -0.08 -4.73 16 13 C -0.06 -1.83 7.80 22.25 0.17 -1.66 16 14 C -0.20 -8.48 9.99 22.39 0.22 -8.26 16 15 C 0.12 5.70 6.65 22.58 0.15 5.85 16 16 O -0.23 -13.94 9.76 -22.68 -0.22 -14.16 16 17 C -0.41 -23.88 9.49 67.92 0.64 -23.23 16 18 H 0.10 5.36 5.20 -2.91 -0.02 5.34 16 19 C -0.02 -1.34 5.49 84.84 0.47 -0.88 16 20 N -0.92 -56.48 13.67 21.61 0.30 -56.19 16 21 Si 1.02 42.71 29.55 68.60 2.03 44.74 16 22 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 23 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 24 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 25 C -0.24 -10.34 9.17 22.39 0.21 -10.14 16 26 C -0.05 -1.55 9.69 22.25 0.22 -1.34 16 27 C 0.08 1.65 3.44 86.32 0.30 1.95 16 28 H 0.06 0.70 8.13 -2.38 -0.02 0.68 16 29 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 31 H 0.08 1.50 6.01 -2.39 -0.01 1.48 16 32 H 0.07 1.00 8.11 -2.39 -0.02 0.98 16 33 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.08 1.43 6.58 -2.39 -0.02 1.41 16 38 H 0.07 1.97 5.65 -2.39 -0.01 1.96 16 39 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.04 0.99 8.02 -2.39 -0.02 0.97 16 41 H 0.09 1.93 8.08 -2.39 -0.02 1.91 16 42 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 43 H 0.11 4.62 8.06 -2.91 -0.02 4.60 16 44 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 45 H 0.12 5.13 5.64 -2.91 -0.02 5.12 16 46 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 47 H 0.03 0.72 8.08 -2.39 -0.02 0.71 16 48 H 0.08 1.67 8.10 -2.38 -0.02 1.65 16 Total: -1.00 -71.52 383.69 4.86 -66.66 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: 0.95 Total: 25.91 kcal Atomic # 6 Polarization: -37.63 SS G_CDS: 5.67 Total: -31.96 kcal Atomic # 7 Polarization: -67.99 SS G_CDS: -3.38 Total: -71.38 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -0.41 Total: -33.97 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -71.52 4.86 -66.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839666741.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.884 kcal (2) G-P(sol) polarization free energy of solvation -71.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds