Wall clock time and date at job start Tue Mar 31 2020 19:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47267 * 14.97666 * 3 2 1 5 5 C 1.52998 * 109.47248 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47459 * 304.99919 * 5 4 3 7 7 O 1.42909 * 109.46925 * 65.00221 * 5 4 3 8 8 C 1.53004 * 109.47280 * 184.99737 * 5 4 3 9 9 N 1.46904 * 109.46958 * 180.02562 * 8 5 4 10 10 C 1.46901 * 110.99728 * 180.02562 * 9 8 5 11 11 C 1.53001 * 109.47101 * 180.02562 * 10 9 8 12 12 H 1.09007 * 109.46489 * 304.99724 * 11 10 9 13 13 O 1.42897 * 109.47603 * 64.99497 * 11 10 9 14 14 C 1.53002 * 109.47030 * 184.99985 * 11 10 9 15 15 O 1.42898 * 109.46914 * 174.99538 * 14 11 10 16 16 C 1.35679 * 116.99810 * 179.97438 * 15 14 11 17 17 C 1.39309 * 119.81732 * 359.72434 * 16 15 14 18 18 C 1.36438 * 120.18426 * 179.75811 * 17 16 15 19 19 C 1.40836 * 119.80853 * 0.51419 * 18 17 16 20 20 C 1.41212 * 120.17749 * 179.71838 * 19 18 17 21 21 H 1.08003 * 120.00013 * 24.56843 * 20 19 18 22 22 C 1.39896 * 120.00107 * 204.57669 * 20 19 18 23 23 N 1.30880 * 119.99875 * 17.92953 * 22 20 19 24 24 Si 1.86801 * 119.99866 * 197.93182 * 22 20 19 25 25 H 1.48502 * 109.47127 * 59.99903 * 24 22 20 26 26 H 1.48496 * 109.46852 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47168 * 299.99734 * 24 22 20 28 28 C 1.40837 * 119.64445 * 359.74485 * 19 18 17 29 29 C 1.36434 * 119.80636 * 359.97438 * 28 19 18 30 30 H 4.44646 * 5.63251 * 179.97438 * 4 1 2 31 31 H 1.08994 * 109.47727 * 254.97136 * 3 2 1 32 32 H 1.09008 * 109.46804 * 134.97544 * 3 2 1 33 33 H 1.09002 * 109.47220 * 59.99981 * 4 3 2 34 34 H 1.08994 * 109.47124 * 299.99907 * 4 3 2 35 35 H 0.96698 * 113.99776 * 59.99592 * 7 5 4 36 36 H 1.08997 * 109.47023 * 300.00449 * 8 5 4 37 37 H 1.08995 * 109.46536 * 60.00485 * 8 5 4 38 38 H 1.00898 * 111.00102 * 303.95500 * 9 8 5 39 39 H 1.09002 * 109.46874 * 299.99567 * 10 9 8 40 40 H 1.08999 * 109.47437 * 59.99777 * 10 9 8 41 41 H 0.96704 * 113.99795 * 59.99738 * 13 11 10 42 42 H 1.08996 * 109.47202 * 294.99530 * 14 11 10 43 43 H 1.09003 * 109.47020 * 54.99791 * 14 11 10 44 44 H 1.08001 * 119.90672 * 0.02562 * 17 16 15 45 45 H 1.08001 * 120.09329 * 180.25857 * 18 17 16 46 46 H 0.96995 * 119.99825 * 180.02562 * 23 22 20 47 47 H 1.07999 * 120.09288 * 179.97438 * 28 19 18 48 48 H 1.08000 * 119.90614 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.3926 -0.3728 5 6 4.6866 -1.3917 -0.3734 6 1 5.0493 -0.6047 -1.0345 7 8 5.1633 -1.1568 0.9532 8 6 5.1972 -2.7473 -0.8662 9 7 6.6662 -2.7466 -0.8661 10 6 7.1932 -4.0351 -1.3352 11 6 8.7227 -3.9963 -1.3206 12 1 9.0701 -3.1453 -1.9067 13 8 9.1832 -3.8671 0.0259 14 6 9.2714 -5.2901 -1.9254 15 8 10.6948 -5.2059 -2.0191 16 6 11.3426 -6.2793 -2.5378 17 6 10.6166 -7.3968 -2.9438 18 6 11.2598 -8.4784 -3.4710 19 6 12.6628 -8.4671 -3.5941 20 6 13.3370 -9.5847 -4.1332 21 1 12.8183 -10.2591 -4.7985 22 6 14.6768 -9.8184 -3.8053 23 7 15.2048 -9.2386 -2.7574 24 14 15.7121 -10.9579 -4.8632 25 1 15.7689 -10.4302 -6.2501 26 1 17.0868 -11.0363 -4.3072 27 1 15.1038 -12.3125 -4.8735 28 6 13.3897 -7.3355 -3.1762 29 6 12.7305 -6.2600 -2.6565 30 1 -1.0498 -0.0004 0.0001 31 1 3.0093 0.2673 0.9924 32 1 3.0089 0.7272 -0.7270 33 1 2.7934 -1.6592 -1.3653 34 1 2.7936 -2.1191 0.3542 35 1 4.8785 -1.8201 1.5966 36 1 4.8345 -3.5343 -0.2050 37 1 4.8336 -2.9264 -1.8779 38 1 7.0275 -1.9850 -1.4207 39 1 6.8441 -4.8314 -0.6778 40 1 6.8438 -4.2227 -2.3505 41 1 8.9106 -4.5912 0.6060 42 1 8.9984 -6.1326 -1.2901 43 1 8.8497 -5.4336 -2.9203 44 1 9.5411 -7.4053 -2.8450 45 1 10.6951 -9.3423 -3.7892 46 1 16.1338 -9.4003 -2.5303 47 1 14.4657 -7.3193 -3.2670 48 1 13.2864 -5.3915 -2.3352 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843101085.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:42 Heat of formation + Delta-G solvation = -77.326587 kcal Electronic energy + Delta-G solvation = -26551.114044 eV Core-core repulsion = 22572.159000 eV Total energy + Delta-G solvation = -3978.955045 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.19503 -38.73903 -37.59130 -36.15149 -35.20294 -34.78871 -33.31797 -31.94330 -30.72561 -29.69350 -29.04118 -28.11165 -25.48959 -24.54776 -23.17352 -22.25138 -21.68731 -20.67676 -20.56253 -18.50420 -17.40802 -17.35710 -16.97142 -16.50716 -16.42090 -16.14395 -15.38841 -15.16863 -15.15945 -14.98359 -14.35763 -14.12847 -13.96041 -13.93652 -13.56633 -13.33093 -13.00520 -12.74242 -12.63411 -12.24577 -12.14040 -12.09522 -11.92973 -11.77088 -11.39326 -11.29701 -11.12567 -10.99433 -10.84873 -10.80666 -10.60302 -10.52770 -10.28124 -9.98142 -9.87260 -9.80809 -9.33546 -9.02086 -8.69434 -7.64830 -7.03626 -6.72503 -4.25997 2.36843 2.42112 2.78727 2.94600 3.07820 3.10046 3.22031 3.39500 3.86967 3.94864 4.04635 4.25001 4.31506 4.48157 4.53979 4.61601 4.65718 4.83900 4.88948 4.96634 4.99874 5.13969 5.17427 5.20207 5.28035 5.33624 5.42270 5.58649 5.59887 5.60603 5.66820 5.70216 6.01297 6.04937 6.22451 6.58707 6.72878 6.97066 7.00105 7.10750 7.18133 7.19143 7.37239 7.46039 7.55265 7.77345 7.78950 7.99923 8.20141 8.44894 8.64853 8.89425 8.98357 10.21952 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.044268 B = 0.001409 C = 0.001379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.361890 B =19863.911840 C =20297.017621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.187 4.187 3 C -0.010 4.010 4 C -0.146 4.146 5 C 0.111 3.889 6 H 0.099 0.901 7 O -0.546 6.546 8 C 0.025 3.975 9 N -0.669 5.669 10 C 0.030 3.970 11 C 0.116 3.884 12 H 0.103 0.897 13 O -0.539 6.539 14 C 0.038 3.962 15 O -0.317 6.317 16 C -0.010 4.010 17 C -0.168 4.168 18 C -0.199 4.199 19 C 0.088 3.912 20 C -0.465 4.465 21 H 0.076 0.924 22 C 0.076 3.924 23 N -0.798 5.798 24 Si 0.907 3.093 25 H -0.264 1.264 26 H -0.279 1.279 27 H -0.266 1.266 28 C -0.133 4.133 29 C -0.118 4.118 30 H 0.216 0.784 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.374 0.626 36 H 0.075 0.925 37 H 0.037 0.963 38 H 0.344 0.656 39 H 0.077 0.923 40 H 0.040 0.960 41 H 0.371 0.629 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.281 0.719 47 H 0.126 0.874 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.138 13.227 4.256 26.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.187 4.187 3 C -0.047 4.047 4 C -0.184 4.184 5 C 0.051 3.949 6 H 0.117 0.883 7 O -0.350 6.350 8 C -0.105 4.105 9 N -0.300 5.300 10 C -0.099 4.099 11 C 0.056 3.944 12 H 0.121 0.879 13 O -0.343 6.343 14 C -0.039 4.039 15 O -0.232 6.232 16 C -0.053 4.053 17 C -0.187 4.187 18 C -0.219 4.219 19 C 0.086 3.914 20 C -0.495 4.495 21 H 0.094 0.906 22 C -0.141 4.141 23 N -0.424 5.424 24 Si 0.732 3.268 25 H -0.189 1.189 26 H -0.204 1.204 27 H -0.191 1.191 28 C -0.153 4.153 29 C -0.137 4.137 30 H 0.233 0.767 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.221 0.779 36 H 0.094 0.906 37 H 0.055 0.945 38 H 0.162 0.838 39 H 0.096 0.904 40 H 0.058 0.942 41 H 0.217 0.783 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.092 0.908 47 H 0.143 0.857 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -21.226 14.295 4.602 26.001 hybrid contribution -0.765 -1.881 -1.118 2.317 sum -21.991 12.414 3.484 25.492 Atomic orbital electron populations 1.24939 0.96036 1.00730 1.01432 1.23239 0.94683 1.00520 1.00230 1.18674 0.84324 0.97795 1.03863 1.22248 0.96159 0.96941 1.03095 1.21893 0.91137 0.96401 0.85472 0.88332 1.86624 1.77072 1.53540 1.17784 1.22713 0.89009 0.98584 1.00160 1.60231 1.05959 1.04328 1.59481 1.22597 0.95557 0.92765 0.99021 1.21821 0.90562 0.97497 0.84568 0.87930 1.86649 1.78025 1.50274 1.19325 1.23111 0.82946 0.97653 1.00202 1.85891 1.17534 1.39200 1.80609 1.18629 0.91729 0.87880 1.07089 1.20383 0.97190 0.95221 1.05883 1.20549 0.95019 0.97788 1.08560 1.17591 0.90783 0.92517 0.90505 1.19431 0.95415 1.08915 1.25730 0.90611 1.25872 0.98299 0.95961 0.93997 1.69825 1.14760 1.37284 1.20544 0.86385 0.78628 0.80722 0.81070 1.18890 1.20359 1.19108 1.20983 1.00036 0.91731 1.02518 1.19844 0.90460 0.99251 1.04151 0.76710 0.88709 0.89524 0.90668 0.91002 0.77917 0.90642 0.94457 0.83756 0.90409 0.94184 0.78275 0.92908 0.92657 0.89021 0.88803 0.90830 0.85657 0.88409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.44 19.25 29.55 0.57 -0.87 16 2 C -0.19 -1.39 13.34 -37.12 -0.50 -1.89 16 3 C -0.01 -0.06 5.60 -29.52 -0.17 -0.22 16 4 C -0.15 -0.72 4.85 -26.73 -0.13 -0.85 16 5 C 0.11 0.64 3.17 -26.73 -0.08 0.56 16 6 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 7 O -0.55 -4.10 12.74 -35.23 -0.45 -4.55 16 8 C 0.03 0.16 5.35 -3.82 -0.02 0.14 16 9 N -0.67 -5.76 6.32 -113.78 -0.72 -6.48 16 10 C 0.03 0.28 5.32 -3.82 -0.02 0.26 16 11 C 0.12 1.43 3.43 -26.73 -0.09 1.33 16 12 H 0.10 1.32 8.14 -51.92 -0.42 0.90 16 13 O -0.54 -7.54 13.25 -40.09 -0.53 -8.07 16 14 C 0.04 0.58 4.37 37.16 0.16 0.74 16 15 O -0.32 -6.51 10.09 -23.59 -0.24 -6.75 16 16 C -0.01 -0.24 6.71 -38.78 -0.26 -0.50 16 17 C -0.17 -3.78 8.96 -39.83 -0.36 -4.14 16 18 C -0.20 -4.90 9.74 -39.25 -0.38 -5.28 16 19 C 0.09 2.37 5.57 -106.80 -0.60 1.77 16 20 C -0.47 -12.36 9.04 -37.83 -0.34 -12.70 16 21 H 0.08 1.93 7.91 -52.48 -0.41 1.51 16 22 C 0.08 1.90 5.13 -17.34 -0.09 1.82 16 23 N -0.80 -20.73 10.96 55.55 0.61 -20.12 16 24 Si 0.91 18.67 29.60 -169.99 -5.03 13.64 16 25 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 26 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 27 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 28 C -0.13 -3.50 8.64 -39.25 -0.34 -3.84 16 29 C -0.12 -2.90 9.92 -39.83 -0.40 -3.29 16 30 H 0.22 0.76 7.80 -54.10 -0.42 0.33 16 31 H 0.09 0.55 7.82 -51.93 -0.41 0.14 16 32 H 0.09 0.44 8.14 -51.92 -0.42 0.02 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.37 1.82 9.04 45.56 0.41 2.23 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.34 2.93 8.73 -39.29 -0.34 2.58 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.37 4.03 9.05 45.56 0.41 4.44 16 42 H 0.05 0.76 7.63 -51.93 -0.40 0.37 16 43 H 0.06 0.79 7.66 -51.93 -0.40 0.39 16 44 H 0.09 1.77 6.27 -52.49 -0.33 1.44 16 45 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 46 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 47 H 0.13 3.36 6.16 -52.49 -0.32 3.04 16 48 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 LS Contribution 408.44 15.07 6.16 6.16 Total: -1.00 -31.83 408.44 -9.23 -41.06 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -5.99 Total: 12.09 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: -3.04 Total: -26.97 kcal Atomic # 7 Polarization: -26.49 SS G_CDS: -0.11 Total: -26.60 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -1.22 Total: -19.37 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -31.83 -9.23 -41.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843101085.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.267 kcal (2) G-P(sol) polarization free energy of solvation -31.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds