Wall clock time and date at job start Tue Mar 31 2020 19:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47267 * 14.97666 * 3 2 1 5 5 C 1.52998 * 109.47248 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47459 * 304.99919 * 5 4 3 7 7 O 1.42909 * 109.46925 * 65.00221 * 5 4 3 8 8 C 1.53004 * 109.47280 * 184.99737 * 5 4 3 9 9 N 1.46904 * 109.46958 * 180.02562 * 8 5 4 10 10 C 1.46901 * 110.99728 * 180.02562 * 9 8 5 11 11 C 1.53001 * 109.47101 * 180.02562 * 10 9 8 12 12 H 1.09007 * 109.46489 * 304.99724 * 11 10 9 13 13 O 1.42897 * 109.47603 * 64.99497 * 11 10 9 14 14 C 1.53002 * 109.47030 * 184.99985 * 11 10 9 15 15 O 1.42898 * 109.46914 * 174.99538 * 14 11 10 16 16 C 1.35679 * 116.99810 * 179.97438 * 15 14 11 17 17 C 1.39309 * 119.81732 * 359.72434 * 16 15 14 18 18 C 1.36438 * 120.18426 * 179.75811 * 17 16 15 19 19 C 1.40836 * 119.80853 * 0.51419 * 18 17 16 20 20 C 1.41212 * 120.17749 * 179.71838 * 19 18 17 21 21 H 1.08003 * 120.00013 * 24.56843 * 20 19 18 22 22 C 1.39896 * 120.00107 * 204.57669 * 20 19 18 23 23 N 1.30880 * 119.99875 * 17.92953 * 22 20 19 24 24 Si 1.86801 * 119.99866 * 197.93182 * 22 20 19 25 25 H 1.48502 * 109.47127 * 59.99903 * 24 22 20 26 26 H 1.48496 * 109.46852 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47168 * 299.99734 * 24 22 20 28 28 C 1.40837 * 119.64445 * 359.74485 * 19 18 17 29 29 C 1.36434 * 119.80636 * 359.97438 * 28 19 18 30 30 H 4.44646 * 5.63251 * 179.97438 * 4 1 2 31 31 H 1.08994 * 109.47727 * 254.97136 * 3 2 1 32 32 H 1.09008 * 109.46804 * 134.97544 * 3 2 1 33 33 H 1.09002 * 109.47220 * 59.99981 * 4 3 2 34 34 H 1.08994 * 109.47124 * 299.99907 * 4 3 2 35 35 H 0.96698 * 113.99776 * 59.99592 * 7 5 4 36 36 H 1.08997 * 109.47023 * 300.00449 * 8 5 4 37 37 H 1.08995 * 109.46536 * 60.00485 * 8 5 4 38 38 H 1.00898 * 111.00102 * 303.95500 * 9 8 5 39 39 H 1.09002 * 109.46874 * 299.99567 * 10 9 8 40 40 H 1.08999 * 109.47437 * 59.99777 * 10 9 8 41 41 H 0.96704 * 113.99795 * 59.99738 * 13 11 10 42 42 H 1.08996 * 109.47202 * 294.99530 * 14 11 10 43 43 H 1.09003 * 109.47020 * 54.99791 * 14 11 10 44 44 H 1.08001 * 119.90672 * 0.02562 * 17 16 15 45 45 H 1.08001 * 120.09329 * 180.25857 * 18 17 16 46 46 H 0.96995 * 119.99825 * 180.02562 * 23 22 20 47 47 H 1.07999 * 120.09288 * 179.97438 * 28 19 18 48 48 H 1.08000 * 119.90614 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.3926 -0.3728 5 6 4.6866 -1.3917 -0.3734 6 1 5.0493 -0.6047 -1.0345 7 8 5.1633 -1.1568 0.9532 8 6 5.1972 -2.7473 -0.8662 9 7 6.6662 -2.7466 -0.8661 10 6 7.1932 -4.0351 -1.3352 11 6 8.7227 -3.9963 -1.3206 12 1 9.0701 -3.1453 -1.9067 13 8 9.1832 -3.8671 0.0259 14 6 9.2714 -5.2901 -1.9254 15 8 10.6948 -5.2059 -2.0191 16 6 11.3426 -6.2793 -2.5378 17 6 10.6166 -7.3968 -2.9438 18 6 11.2598 -8.4784 -3.4710 19 6 12.6628 -8.4671 -3.5941 20 6 13.3370 -9.5847 -4.1332 21 1 12.8183 -10.2591 -4.7985 22 6 14.6768 -9.8184 -3.8053 23 7 15.2048 -9.2386 -2.7574 24 14 15.7121 -10.9579 -4.8632 25 1 15.7689 -10.4302 -6.2501 26 1 17.0868 -11.0363 -4.3072 27 1 15.1038 -12.3125 -4.8735 28 6 13.3897 -7.3355 -3.1762 29 6 12.7305 -6.2600 -2.6565 30 1 -1.0498 -0.0004 0.0001 31 1 3.0093 0.2673 0.9924 32 1 3.0089 0.7272 -0.7270 33 1 2.7934 -1.6592 -1.3653 34 1 2.7936 -2.1191 0.3542 35 1 4.8785 -1.8201 1.5966 36 1 4.8345 -3.5343 -0.2050 37 1 4.8336 -2.9264 -1.8779 38 1 7.0275 -1.9850 -1.4207 39 1 6.8441 -4.8314 -0.6778 40 1 6.8438 -4.2227 -2.3505 41 1 8.9106 -4.5912 0.6060 42 1 8.9984 -6.1326 -1.2901 43 1 8.8497 -5.4336 -2.9203 44 1 9.5411 -7.4053 -2.8450 45 1 10.6951 -9.3423 -3.7892 46 1 16.1338 -9.4003 -2.5303 47 1 14.4657 -7.3193 -3.2670 48 1 13.2864 -5.3915 -2.3352 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843101085.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:41 Heat of formation + Delta-G solvation = -100.713830 kcal Electronic energy + Delta-G solvation = -26552.128191 eV Core-core repulsion = 22572.159000 eV Total energy + Delta-G solvation = -3979.969192 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.65458 -39.47192 -38.76615 -37.67809 -35.86987 -35.36767 -35.17513 -32.51332 -31.96402 -31.25430 -30.80700 -28.91561 -26.85635 -25.87750 -23.91017 -23.19932 -22.55605 -22.36219 -22.03719 -19.25287 -18.95223 -18.72385 -17.94858 -17.39251 -17.24794 -17.03356 -16.95039 -16.13052 -15.93056 -15.78748 -15.73331 -15.40194 -15.22364 -14.84688 -14.57958 -14.41380 -14.07059 -13.93741 -13.82041 -13.56460 -13.41913 -13.27039 -13.02869 -12.78362 -12.69377 -12.62469 -12.38023 -12.36305 -11.91514 -11.75838 -11.70736 -11.58953 -11.33219 -11.22410 -11.02114 -10.98242 -10.86998 -10.60205 -9.56336 -9.30902 -8.92547 -8.59330 -6.22813 0.95549 1.02673 1.40058 1.51046 1.55065 1.86215 1.91087 2.22973 2.38990 2.73015 3.11577 3.49672 3.57545 3.68781 3.70720 3.85078 3.94848 4.04375 4.06387 4.12185 4.24384 4.28931 4.34499 4.35741 4.45773 4.47312 4.54997 4.65442 4.72608 4.74909 4.86877 4.89686 5.03925 5.07768 5.18170 5.20257 5.21766 5.27993 5.28358 5.58713 5.64419 5.88318 5.99254 6.05656 6.26409 6.37072 6.56722 6.70269 6.80564 6.89910 6.95086 6.98098 7.10521 8.37146 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.044268 B = 0.001409 C = 0.001379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.361890 B =19863.911840 C =20297.017621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.217 4.217 3 C -0.010 4.010 4 C -0.135 4.135 5 C 0.117 3.883 6 H 0.096 0.904 7 O -0.565 6.565 8 C 0.028 3.972 9 N -0.681 5.681 10 C 0.042 3.958 11 C 0.123 3.877 12 H 0.094 0.906 13 O -0.561 6.561 14 C 0.029 3.971 15 O -0.332 6.332 16 C -0.001 4.001 17 C -0.164 4.164 18 C -0.208 4.208 19 C 0.055 3.945 20 C -0.501 4.501 21 H 0.077 0.923 22 C 0.035 3.965 23 N -0.832 5.832 24 Si 0.982 3.018 25 H -0.261 1.261 26 H -0.269 1.269 27 H -0.259 1.259 28 C -0.153 4.153 29 C -0.134 4.134 30 H 0.240 0.760 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.383 0.617 36 H 0.080 0.920 37 H 0.047 0.953 38 H 0.343 0.657 39 H 0.087 0.913 40 H 0.052 0.948 41 H 0.383 0.617 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.130 0.870 45 H 0.106 0.894 46 H 0.287 0.713 47 H 0.109 0.891 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.057 12.985 3.987 27.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.217 4.217 3 C -0.047 4.047 4 C -0.173 4.173 5 C 0.057 3.943 6 H 0.114 0.886 7 O -0.372 6.372 8 C -0.101 4.101 9 N -0.313 5.313 10 C -0.087 4.087 11 C 0.063 3.937 12 H 0.112 0.888 13 O -0.367 6.367 14 C -0.047 4.047 15 O -0.247 6.247 16 C -0.045 4.045 17 C -0.183 4.183 18 C -0.228 4.228 19 C 0.053 3.947 20 C -0.531 4.531 21 H 0.095 0.905 22 C -0.179 4.179 23 N -0.458 5.458 24 Si 0.802 3.198 25 H -0.186 1.186 26 H -0.194 1.194 27 H -0.183 1.183 28 C -0.172 4.172 29 C -0.153 4.153 30 H 0.257 0.743 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.232 0.768 36 H 0.099 0.901 37 H 0.065 0.935 38 H 0.161 0.839 39 H 0.106 0.894 40 H 0.070 0.930 41 H 0.231 0.769 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.147 0.853 45 H 0.125 0.875 46 H 0.098 0.902 47 H 0.127 0.873 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -23.181 14.058 4.350 27.458 hybrid contribution -0.334 -1.666 -0.936 1.940 sum -23.516 12.392 3.414 26.800 Atomic orbital electron populations 1.25704 0.97012 1.00014 1.00679 1.23774 0.95616 1.01284 1.01003 1.18706 0.83722 0.98439 1.03830 1.22129 0.95344 0.96493 1.03361 1.21854 0.91534 0.96113 0.84784 0.88566 1.86594 1.77516 1.54386 1.18696 1.22725 0.87573 0.98948 1.00833 1.60222 1.07361 1.04017 1.59658 1.22432 0.92824 0.93412 1.00050 1.21797 0.92627 0.95672 0.83584 0.88806 1.86614 1.78690 1.51215 1.20186 1.23517 0.79891 0.99747 1.01549 1.85885 1.20736 1.38117 1.80009 1.18706 0.91525 0.88639 1.05651 1.20692 0.99081 0.94058 1.04420 1.20808 0.94451 0.98992 1.08536 1.17954 0.92164 0.92979 0.91645 1.19705 0.96872 1.09577 1.26925 0.90491 1.26734 0.98963 0.97460 0.94790 1.69887 1.15400 1.38678 1.21867 0.85261 0.76977 0.78563 0.78954 1.18556 1.19364 1.18306 1.20895 0.99475 0.92656 1.04184 1.20005 0.91759 0.99135 1.04396 0.74346 0.89052 0.89121 0.90258 0.90698 0.76794 0.90133 0.93503 0.83863 0.89449 0.92967 0.76873 0.91785 0.91216 0.85253 0.87543 0.90199 0.87298 0.87663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.64 19.25 74.32 1.43 -1.21 16 2 C -0.22 -3.04 13.34 31.12 0.42 -2.62 16 3 C -0.01 -0.11 5.60 28.79 0.16 0.05 16 4 C -0.14 -1.12 4.85 30.59 0.15 -0.97 16 5 C 0.12 1.17 3.17 30.59 0.10 1.27 16 6 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 7 O -0.57 -7.82 12.74 -148.98 -1.90 -9.72 16 8 C 0.03 0.30 5.35 86.30 0.46 0.76 16 9 N -0.68 -10.30 6.32 -513.87 -3.25 -13.55 16 10 C 0.04 0.66 5.32 86.30 0.46 1.12 16 11 C 0.12 2.79 3.43 30.60 0.10 2.90 16 12 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 13 O -0.56 -14.86 13.25 -144.34 -1.91 -16.77 16 14 C 0.03 0.81 4.37 71.98 0.31 1.12 16 15 O -0.33 -13.17 10.09 -85.33 -0.86 -14.03 16 16 C 0.00 -0.06 6.71 22.79 0.15 0.09 16 17 C -0.16 -7.12 8.96 22.11 0.20 -6.92 16 18 C -0.21 -10.16 9.74 22.49 0.22 -9.94 16 19 C 0.05 2.99 5.57 -21.28 -0.12 2.88 16 20 C -0.50 -27.20 9.04 23.40 0.21 -26.99 16 21 H 0.08 3.99 7.91 -2.91 -0.02 3.96 16 22 C 0.03 1.76 5.13 85.24 0.44 2.20 16 23 N -0.83 -44.25 10.96 21.82 0.24 -44.02 16 24 Si 0.98 38.42 29.60 68.60 2.03 40.45 16 25 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 26 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 27 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 28 C -0.15 -8.29 8.64 22.48 0.19 -8.09 16 29 C -0.13 -6.69 9.92 22.11 0.22 -6.47 16 30 H 0.24 1.24 7.80 -4.43 -0.03 1.20 16 31 H 0.09 1.01 7.82 -2.39 -0.02 0.99 16 32 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.38 3.27 9.04 -74.06 -0.67 2.60 16 36 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.34 5.27 8.73 -89.70 -0.78 4.48 16 39 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.38 7.67 9.05 -74.05 -0.67 7.00 16 42 H 0.06 1.65 7.63 -2.39 -0.02 1.63 16 43 H 0.07 1.76 7.66 -2.39 -0.02 1.74 16 44 H 0.13 4.55 6.27 -2.91 -0.02 4.53 16 45 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 46 H 0.29 13.88 8.30 -92.71 -0.77 13.11 16 47 H 0.11 6.15 6.16 -2.91 -0.02 6.13 16 48 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 Total: -1.00 -69.09 408.44 -1.68 -70.77 By element: Atomic # 1 Polarization: 38.84 SS G_CDS: -1.14 Total: 37.70 kcal Atomic # 6 Polarization: -55.94 SS G_CDS: 5.11 Total: -50.83 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: -3.01 Total: -57.57 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -4.67 Total: -40.52 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Total: -69.09 -1.68 -70.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843101085.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.939 kcal (2) G-P(sol) polarization free energy of solvation -69.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds