Wall clock time and date at job start Tue Mar 31 2020 19:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52995 * 109.46704 * 156.57305 * 3 2 1 5 5 C 1.53004 * 109.47223 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.46650 * 54.99918 * 5 4 3 7 7 O 1.42907 * 109.46937 * 295.00349 * 5 4 3 8 8 C 1.52991 * 109.47569 * 174.99967 * 5 4 3 9 9 N 1.46899 * 109.47381 * 185.00194 * 8 5 4 10 10 C 1.46901 * 111.00059 * 179.97438 * 9 8 5 11 11 C 1.53007 * 109.46971 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.46897 * 305.00533 * 11 10 9 13 13 O 1.42894 * 109.46721 * 65.00095 * 11 10 9 14 14 C 1.52998 * 109.46793 * 184.99942 * 11 10 9 15 15 O 1.42911 * 109.46670 * 175.00115 * 14 11 10 16 16 C 1.35675 * 116.99567 * 180.02562 * 15 14 11 17 17 C 1.39314 * 119.81564 * 180.02562 * 16 15 14 18 18 C 1.36436 * 120.18679 * 180.27303 * 17 16 15 19 19 C 1.40839 * 119.80658 * 359.49986 * 18 17 16 20 20 C 1.41214 * 120.17523 * 180.22651 * 19 18 17 21 21 H 1.07998 * 120.00106 * 205.15988 * 20 19 18 22 22 C 1.39900 * 119.99897 * 25.16786 * 20 19 18 23 23 N 1.30877 * 119.99964 * 17.95935 * 22 20 19 24 24 Si 1.86804 * 119.99799 * 197.96847 * 22 20 19 25 25 H 1.48497 * 109.47499 * 94.50679 * 24 22 20 26 26 H 1.48498 * 109.46920 * 214.51003 * 24 22 20 27 27 H 1.48503 * 109.46747 * 334.50589 * 24 22 20 28 28 C 1.40833 * 119.64336 * 0.49469 * 19 18 17 29 29 C 1.36433 * 119.80947 * 359.75507 * 28 19 18 30 30 H 4.44641 * 5.63261 * 179.97438 * 4 1 2 31 31 H 1.09000 * 109.47196 * 36.57437 * 3 2 1 32 32 H 1.09004 * 109.46817 * 276.56865 * 3 2 1 33 33 H 1.09007 * 109.47396 * 59.99811 * 4 3 2 34 34 H 1.08999 * 109.47654 * 299.99863 * 4 3 2 35 35 H 0.96700 * 113.99867 * 299.99575 * 7 5 4 36 36 H 1.09003 * 109.46987 * 65.00101 * 8 5 4 37 37 H 1.09003 * 109.47245 * 305.00551 * 8 5 4 38 38 H 1.00900 * 111.00061 * 56.04485 * 9 8 5 39 39 H 1.09000 * 109.46932 * 60.00030 * 10 9 8 40 40 H 1.08990 * 109.47216 * 299.99869 * 10 9 8 41 41 H 0.96704 * 114.00200 * 60.00425 * 13 11 10 42 42 H 1.08998 * 109.47240 * 55.00993 * 14 11 10 43 43 H 1.08997 * 109.47367 * 294.99644 * 14 11 10 44 44 H 1.08005 * 119.90322 * 359.97438 * 17 16 15 45 45 H 1.07997 * 120.09477 * 179.72057 * 18 17 16 46 46 H 0.97003 * 119.99637 * 180.02562 * 23 22 20 47 47 H 1.08001 * 120.08913 * 179.73279 * 28 19 18 48 48 H 1.08003 * 119.90178 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1553 1.3245 -0.5735 5 6 4.6854 1.3255 -0.5730 6 1 5.0494 0.4501 -1.1108 7 8 5.1613 1.2890 0.7741 8 6 5.1948 2.5942 -1.2596 9 7 6.6589 2.5393 -1.3661 10 6 7.1846 3.7437 -2.0225 11 6 8.7091 3.6503 -2.1144 12 1 9.1232 3.4810 -1.1204 13 8 9.0689 2.5650 -2.9715 14 6 9.2666 4.9564 -2.6837 15 8 10.6949 4.9144 -2.6612 16 6 11.3506 6.0037 -3.1349 17 6 12.7436 6.0253 -3.1408 18 6 13.4106 7.1190 -3.6103 19 6 12.6870 8.2238 -4.0995 20 6 13.3695 9.3578 -4.5916 21 1 12.8869 10.3239 -4.5843 22 6 14.6708 9.2298 -5.0889 23 7 15.1288 8.0516 -5.4282 24 14 15.7549 10.7405 -5.2684 25 1 16.6010 10.8894 -4.0571 26 1 16.6235 10.5873 -6.4631 27 1 14.9020 11.9456 -5.4278 28 6 11.2790 8.1937 -4.0900 29 6 10.6273 7.0943 -3.6123 30 1 -1.0501 -0.0005 0.0000 31 1 3.0098 -0.8245 -0.6123 32 1 3.0094 -0.1167 1.0210 33 1 2.7916 2.1497 0.0388 34 1 2.7920 1.4420 -1.5944 35 1 4.8752 2.0394 1.3127 36 1 4.9057 3.4661 -0.6727 37 1 4.7605 2.6672 -2.2567 38 1 6.9552 1.7053 -1.8506 39 1 6.9093 4.6238 -1.4413 40 1 6.7641 3.8241 -3.0248 41 1 8.7332 2.6490 -3.8745 42 1 8.9183 5.7941 -2.0796 43 1 8.9230 5.0811 -3.7106 44 1 13.2969 5.1759 -2.7683 45 1 14.4905 7.1360 -3.6100 46 1 16.0312 7.9629 -5.7727 47 1 10.7168 9.0386 -4.4594 48 1 9.5476 7.0698 -3.6040 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843101089.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:46 Heat of formation + Delta-G solvation = -79.473604 kcal Electronic energy + Delta-G solvation = -26541.429560 eV Core-core repulsion = 22562.381414 eV Total energy + Delta-G solvation = -3979.048146 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -39.23307 -38.74753 -37.67669 -36.17142 -35.20193 -34.80456 -33.31754 -31.95147 -30.78120 -29.69742 -29.04390 -28.13193 -25.48875 -24.54796 -23.19106 -22.21323 -21.70105 -20.68452 -20.57273 -18.50643 -17.44604 -17.36127 -16.93236 -16.60948 -16.41643 -16.23061 -15.47150 -15.22565 -15.15230 -14.96306 -14.32014 -14.17463 -13.93454 -13.85038 -13.62967 -13.34514 -13.02274 -12.73883 -12.67516 -12.24840 -12.14001 -12.13648 -11.93612 -11.78718 -11.39388 -11.31714 -11.16194 -10.99112 -10.85446 -10.80477 -10.60653 -10.53061 -10.32713 -9.97621 -9.93846 -9.81404 -9.33472 -9.03387 -8.73860 -7.64962 -7.03265 -6.72504 -4.26014 2.36658 2.41950 2.77453 2.94429 3.08777 3.12287 3.21041 3.39985 3.86238 3.95278 4.03644 4.23456 4.32717 4.38681 4.53770 4.61610 4.65327 4.80957 4.93608 4.95961 4.98513 5.12643 5.14782 5.17308 5.33048 5.33694 5.42417 5.58176 5.59998 5.60301 5.66833 5.69943 6.04038 6.05107 6.22616 6.59507 6.72718 6.97092 7.03789 7.10737 7.18136 7.18948 7.34977 7.45252 7.55108 7.61122 7.78366 8.00426 8.19922 8.44870 8.65079 8.89646 8.98357 10.22239 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.044121 B = 0.001405 C = 0.001383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.471486 B =19919.451055 C =20234.783997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.187 4.187 3 C -0.010 4.010 4 C -0.146 4.146 5 C 0.111 3.889 6 H 0.100 0.900 7 O -0.547 6.547 8 C 0.026 3.974 9 N -0.675 5.675 10 C 0.032 3.968 11 C 0.112 3.888 12 H 0.116 0.884 13 O -0.550 6.550 14 C 0.039 3.961 15 O -0.317 6.317 16 C -0.009 4.009 17 C -0.118 4.118 18 C -0.132 4.132 19 C 0.088 3.912 20 C -0.465 4.465 21 H 0.076 0.924 22 C 0.076 3.924 23 N -0.799 5.799 24 Si 0.907 3.093 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.263 1.263 28 C -0.199 4.199 29 C -0.168 4.168 30 H 0.216 0.784 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.374 0.626 36 H 0.076 0.924 37 H 0.037 0.963 38 H 0.350 0.650 39 H 0.083 0.917 40 H 0.034 0.966 41 H 0.369 0.631 42 H 0.058 0.942 43 H 0.051 0.949 44 H 0.098 0.902 45 H 0.125 0.875 46 H 0.280 0.720 47 H 0.094 0.906 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.209 -11.943 7.199 26.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.187 4.187 3 C -0.047 4.047 4 C -0.185 4.185 5 C 0.051 3.949 6 H 0.118 0.882 7 O -0.352 6.352 8 C -0.104 4.104 9 N -0.307 5.307 10 C -0.098 4.098 11 C 0.052 3.948 12 H 0.134 0.866 13 O -0.355 6.355 14 C -0.038 4.038 15 O -0.232 6.232 16 C -0.052 4.052 17 C -0.137 4.137 18 C -0.152 4.152 19 C 0.086 3.914 20 C -0.495 4.495 21 H 0.095 0.905 22 C -0.141 4.141 23 N -0.425 5.425 24 Si 0.732 3.268 25 H -0.194 1.194 26 H -0.204 1.204 27 H -0.187 1.187 28 C -0.218 4.218 29 C -0.187 4.187 30 H 0.233 0.767 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.221 0.779 36 H 0.094 0.906 37 H 0.056 0.944 38 H 0.169 0.831 39 H 0.101 0.899 40 H 0.052 0.948 41 H 0.216 0.784 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.116 0.884 45 H 0.142 0.858 46 H 0.091 0.909 47 H 0.112 0.888 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.225 -12.740 8.125 26.055 hybrid contribution -0.830 1.572 -1.652 2.426 sum -22.055 -11.169 6.474 25.555 Atomic orbital electron populations 1.24948 0.96037 1.00776 1.01371 1.23240 0.94679 1.00507 1.00256 1.18677 0.84329 0.98285 1.03369 1.22253 0.96136 0.97605 1.02461 1.21901 0.91125 0.97790 0.84073 0.88219 1.86627 1.77039 1.49942 1.21586 1.22712 0.88805 0.99175 0.99710 1.60259 1.08653 1.04881 1.56887 1.22555 0.95319 0.94461 0.97452 1.21964 0.91665 0.85396 0.95733 0.86647 1.86657 1.79098 1.45138 1.24564 1.23084 0.82815 0.97701 1.00190 1.85895 1.16899 1.39214 1.81211 1.18627 0.91562 0.87439 1.07615 1.19843 0.90384 0.99134 1.04351 1.20963 0.99892 0.93685 1.00640 1.17598 0.90721 0.93093 0.89986 1.19474 0.98116 0.95484 1.36424 0.90546 1.25873 0.98290 0.97088 0.92878 1.69838 1.17294 1.24580 1.30755 0.86321 0.79902 0.82132 0.78467 1.19369 1.20353 1.18681 1.20556 0.94622 0.97946 1.08724 1.20384 0.97124 0.95447 1.05755 0.76700 0.89498 0.88715 0.91001 0.90643 0.77942 0.90579 0.94439 0.83123 0.89852 0.94779 0.78436 0.92374 0.93110 0.88400 0.85762 0.90917 0.88789 0.89010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.44 19.25 29.55 0.57 -0.87 16 2 C -0.19 -1.39 13.34 -37.12 -0.50 -1.88 16 3 C -0.01 -0.06 5.60 -29.52 -0.17 -0.22 16 4 C -0.15 -0.72 4.85 -26.73 -0.13 -0.85 16 5 C 0.11 0.65 3.14 -26.73 -0.08 0.56 16 6 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 7 O -0.55 -4.07 12.82 -35.23 -0.45 -4.52 16 8 C 0.03 0.17 5.32 -3.83 -0.02 0.15 16 9 N -0.67 -5.89 6.45 -113.78 -0.73 -6.63 16 10 C 0.03 0.29 5.36 -3.82 -0.02 0.27 16 11 C 0.11 1.38 3.49 -26.73 -0.09 1.29 16 12 H 0.12 1.60 8.14 -51.93 -0.42 1.17 16 13 O -0.55 -7.12 12.82 -40.08 -0.51 -7.64 16 14 C 0.04 0.59 4.37 37.16 0.16 0.76 16 15 O -0.32 -6.51 10.09 -23.58 -0.24 -6.75 16 16 C -0.01 -0.22 6.71 -38.78 -0.26 -0.48 16 17 C -0.12 -2.90 9.92 -39.83 -0.40 -3.30 16 18 C -0.13 -3.48 8.64 -39.25 -0.34 -3.82 16 19 C 0.09 2.37 5.57 -106.80 -0.59 1.77 16 20 C -0.47 -12.36 9.04 -37.83 -0.34 -12.71 16 21 H 0.08 1.95 7.91 -52.49 -0.42 1.54 16 22 C 0.08 1.90 5.13 -17.34 -0.09 1.81 16 23 N -0.80 -20.76 11.00 55.55 0.61 -20.15 16 24 Si 0.91 18.70 29.60 -169.99 -5.03 13.67 16 25 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 26 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 27 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 28 C -0.20 -4.88 9.74 -39.25 -0.38 -5.26 16 29 C -0.17 -3.79 8.96 -39.83 -0.36 -4.14 16 30 H 0.22 0.75 7.80 -54.08 -0.42 0.33 16 31 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.54 7.82 -51.93 -0.41 0.14 16 33 H 0.07 0.34 8.14 -51.92 -0.42 -0.09 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.37 1.72 9.05 45.56 0.41 2.13 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.35 3.12 8.29 -39.29 -0.33 2.79 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.37 3.51 9.05 45.56 0.41 3.92 16 42 H 0.06 0.83 7.64 -51.93 -0.40 0.44 16 43 H 0.05 0.73 7.65 -51.93 -0.40 0.33 16 44 H 0.10 2.24 8.06 -52.48 -0.42 1.82 16 45 H 0.12 3.34 6.21 -52.49 -0.33 3.01 16 46 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 47 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 48 H 0.09 1.77 6.27 -52.48 -0.33 1.44 16 LS Contribution 407.90 15.07 6.15 6.15 Total: -1.00 -31.65 407.90 -9.23 -40.87 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -5.98 Total: 11.90 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: -3.04 Total: -26.92 kcal Atomic # 7 Polarization: -26.65 SS G_CDS: -0.12 Total: -26.77 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -1.20 Total: -18.90 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.65 -9.23 -40.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843101089.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.602 kcal (2) G-P(sol) polarization free energy of solvation -31.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds