Wall clock time and date at job start Tue Mar 31 2020 19:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52995 * 109.46704 * 156.57305 * 3 2 1 5 5 C 1.53004 * 109.47223 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.46650 * 54.99918 * 5 4 3 7 7 O 1.42907 * 109.46937 * 295.00349 * 5 4 3 8 8 C 1.52991 * 109.47569 * 174.99967 * 5 4 3 9 9 N 1.46899 * 109.47381 * 185.00194 * 8 5 4 10 10 C 1.46901 * 111.00059 * 179.97438 * 9 8 5 11 11 C 1.53007 * 109.46971 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.46897 * 305.00533 * 11 10 9 13 13 O 1.42894 * 109.46721 * 65.00095 * 11 10 9 14 14 C 1.52998 * 109.46793 * 184.99942 * 11 10 9 15 15 O 1.42911 * 109.46670 * 175.00115 * 14 11 10 16 16 C 1.35675 * 116.99567 * 180.02562 * 15 14 11 17 17 C 1.39314 * 119.81564 * 180.02562 * 16 15 14 18 18 C 1.36436 * 120.18679 * 180.27303 * 17 16 15 19 19 C 1.40839 * 119.80658 * 359.49986 * 18 17 16 20 20 C 1.41214 * 120.17523 * 180.22651 * 19 18 17 21 21 H 1.07998 * 120.00106 * 205.15988 * 20 19 18 22 22 C 1.39900 * 119.99897 * 25.16786 * 20 19 18 23 23 N 1.30877 * 119.99964 * 17.95935 * 22 20 19 24 24 Si 1.86804 * 119.99799 * 197.96847 * 22 20 19 25 25 H 1.48497 * 109.47499 * 94.50679 * 24 22 20 26 26 H 1.48498 * 109.46920 * 214.51003 * 24 22 20 27 27 H 1.48503 * 109.46747 * 334.50589 * 24 22 20 28 28 C 1.40833 * 119.64336 * 0.49469 * 19 18 17 29 29 C 1.36433 * 119.80947 * 359.75507 * 28 19 18 30 30 H 4.44641 * 5.63261 * 179.97438 * 4 1 2 31 31 H 1.09000 * 109.47196 * 36.57437 * 3 2 1 32 32 H 1.09004 * 109.46817 * 276.56865 * 3 2 1 33 33 H 1.09007 * 109.47396 * 59.99811 * 4 3 2 34 34 H 1.08999 * 109.47654 * 299.99863 * 4 3 2 35 35 H 0.96700 * 113.99867 * 299.99575 * 7 5 4 36 36 H 1.09003 * 109.46987 * 65.00101 * 8 5 4 37 37 H 1.09003 * 109.47245 * 305.00551 * 8 5 4 38 38 H 1.00900 * 111.00061 * 56.04485 * 9 8 5 39 39 H 1.09000 * 109.46932 * 60.00030 * 10 9 8 40 40 H 1.08990 * 109.47216 * 299.99869 * 10 9 8 41 41 H 0.96704 * 114.00200 * 60.00425 * 13 11 10 42 42 H 1.08998 * 109.47240 * 55.00993 * 14 11 10 43 43 H 1.08997 * 109.47367 * 294.99644 * 14 11 10 44 44 H 1.08005 * 119.90322 * 359.97438 * 17 16 15 45 45 H 1.07997 * 120.09477 * 179.72057 * 18 17 16 46 46 H 0.97003 * 119.99637 * 180.02562 * 23 22 20 47 47 H 1.08001 * 120.08913 * 179.73279 * 28 19 18 48 48 H 1.08003 * 119.90178 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1553 1.3245 -0.5735 5 6 4.6854 1.3255 -0.5730 6 1 5.0494 0.4501 -1.1108 7 8 5.1613 1.2890 0.7741 8 6 5.1948 2.5942 -1.2596 9 7 6.6589 2.5393 -1.3661 10 6 7.1846 3.7437 -2.0225 11 6 8.7091 3.6503 -2.1144 12 1 9.1232 3.4810 -1.1204 13 8 9.0689 2.5650 -2.9715 14 6 9.2666 4.9564 -2.6837 15 8 10.6949 4.9144 -2.6612 16 6 11.3506 6.0037 -3.1349 17 6 12.7436 6.0253 -3.1408 18 6 13.4106 7.1190 -3.6103 19 6 12.6870 8.2238 -4.0995 20 6 13.3695 9.3578 -4.5916 21 1 12.8869 10.3239 -4.5843 22 6 14.6708 9.2298 -5.0889 23 7 15.1288 8.0516 -5.4282 24 14 15.7549 10.7405 -5.2684 25 1 16.6010 10.8894 -4.0571 26 1 16.6235 10.5873 -6.4631 27 1 14.9020 11.9456 -5.4278 28 6 11.2790 8.1937 -4.0900 29 6 10.6273 7.0943 -3.6123 30 1 -1.0501 -0.0005 0.0000 31 1 3.0098 -0.8245 -0.6123 32 1 3.0094 -0.1167 1.0210 33 1 2.7916 2.1497 0.0388 34 1 2.7920 1.4420 -1.5944 35 1 4.8752 2.0394 1.3127 36 1 4.9057 3.4661 -0.6727 37 1 4.7605 2.6672 -2.2567 38 1 6.9552 1.7053 -1.8506 39 1 6.9093 4.6238 -1.4413 40 1 6.7641 3.8241 -3.0248 41 1 8.7332 2.6490 -3.8745 42 1 8.9183 5.7941 -2.0796 43 1 8.9230 5.0811 -3.7106 44 1 13.2969 5.1759 -2.7683 45 1 14.4905 7.1360 -3.6100 46 1 16.0312 7.9629 -5.7727 47 1 10.7168 9.0386 -4.4594 48 1 9.5476 7.0698 -3.6040 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843101089.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:45 Heat of formation + Delta-G solvation = -102.711123 kcal Electronic energy + Delta-G solvation = -26542.437214 eV Core-core repulsion = 22562.381414 eV Total energy + Delta-G solvation = -3980.055801 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.66754 -39.51016 -38.80478 -37.72562 -35.84617 -35.37826 -35.17591 -32.52817 -31.98261 -31.27882 -30.81527 -28.92975 -26.85892 -25.87972 -23.94138 -23.14938 -22.55350 -22.36671 -22.06408 -19.25384 -18.95469 -18.74008 -17.84182 -17.60451 -17.31651 -17.02395 -16.91209 -16.24363 -15.94710 -15.76207 -15.73423 -15.43326 -15.15537 -14.89058 -14.55936 -14.37295 -14.07724 -13.94190 -13.85517 -13.59949 -13.43655 -13.23485 -13.08991 -12.80984 -12.70377 -12.60650 -12.38838 -12.36846 -11.91279 -11.78355 -11.69351 -11.58532 -11.34407 -11.24649 -11.06217 -10.99839 -10.88524 -10.63229 -9.56497 -9.35464 -8.92344 -8.59550 -6.23035 0.94838 1.02364 1.40192 1.52682 1.53643 1.86214 1.91114 2.23063 2.38769 2.72776 3.12106 3.46337 3.53732 3.65736 3.70072 3.85667 3.99040 4.02423 4.04069 4.12211 4.23482 4.28948 4.33865 4.35493 4.43973 4.47028 4.54053 4.68501 4.70740 4.75734 4.86519 4.89619 5.04346 5.08881 5.17868 5.19971 5.21572 5.27573 5.28361 5.58319 5.64327 5.88106 5.99021 6.05873 6.26120 6.39223 6.56585 6.70263 6.77643 6.82822 6.95139 6.96833 7.10307 8.37367 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.044121 B = 0.001405 C = 0.001383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.471486 B =19919.451055 C =20234.783997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.217 4.217 3 C -0.011 4.011 4 C -0.135 4.135 5 C 0.117 3.883 6 H 0.096 0.904 7 O -0.567 6.567 8 C 0.029 3.971 9 N -0.687 5.687 10 C 0.043 3.957 11 C 0.122 3.878 12 H 0.097 0.903 13 O -0.568 6.568 14 C 0.030 3.970 15 O -0.332 6.332 16 C -0.001 4.001 17 C -0.134 4.134 18 C -0.152 4.152 19 C 0.055 3.945 20 C -0.500 4.500 21 H 0.077 0.923 22 C 0.034 3.966 23 N -0.832 5.832 24 Si 0.982 3.018 25 H -0.264 1.264 26 H -0.269 1.269 27 H -0.257 1.257 28 C -0.207 4.207 29 C -0.164 4.164 30 H 0.240 0.760 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.384 0.616 36 H 0.081 0.919 37 H 0.048 0.952 38 H 0.347 0.653 39 H 0.090 0.910 40 H 0.050 0.950 41 H 0.384 0.616 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.105 0.895 45 H 0.108 0.892 46 H 0.287 0.713 47 H 0.107 0.893 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.155 -11.611 7.087 27.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.217 4.217 3 C -0.047 4.047 4 C -0.173 4.173 5 C 0.057 3.943 6 H 0.114 0.886 7 O -0.374 6.374 8 C -0.101 4.101 9 N -0.319 5.319 10 C -0.086 4.086 11 C 0.062 3.938 12 H 0.115 0.885 13 O -0.374 6.374 14 C -0.046 4.046 15 O -0.248 6.248 16 C -0.044 4.044 17 C -0.153 4.153 18 C -0.171 4.171 19 C 0.053 3.947 20 C -0.530 4.530 21 H 0.095 0.905 22 C -0.179 4.179 23 N -0.459 5.459 24 Si 0.803 3.197 25 H -0.189 1.189 26 H -0.194 1.194 27 H -0.181 1.181 28 C -0.227 4.227 29 C -0.183 4.183 30 H 0.257 0.743 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.233 0.767 36 H 0.099 0.901 37 H 0.066 0.934 38 H 0.166 0.834 39 H 0.108 0.892 40 H 0.068 0.932 41 H 0.233 0.767 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.123 0.877 45 H 0.126 0.874 46 H 0.098 0.902 47 H 0.125 0.875 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -23.207 -12.419 8.016 27.515 hybrid contribution -0.391 1.309 -1.563 2.076 sum -23.598 -11.109 6.453 26.869 Atomic orbital electron populations 1.25713 0.97013 1.00052 1.00609 1.23770 0.95606 1.01276 1.01037 1.18709 0.83739 0.98917 1.03345 1.22134 0.95268 0.97250 1.02674 1.21852 0.91560 0.97462 0.83396 0.88615 1.86596 1.77489 1.50878 1.22427 1.22733 0.87374 0.99557 1.00399 1.60249 1.10153 1.04567 1.56974 1.22400 0.92668 0.94946 0.98614 1.21842 0.93638 0.83793 0.94479 0.88545 1.86622 1.79665 1.45333 1.25807 1.23495 0.79720 0.99849 1.01544 1.85889 1.20119 1.38038 1.80710 1.18705 0.91373 0.88226 1.06137 1.20004 0.91691 0.98977 1.04636 1.20871 0.99299 0.94720 1.02215 1.17957 0.92098 0.93639 0.91035 1.19729 0.99647 0.95557 1.38096 0.90533 1.26730 0.99092 1.00226 0.91893 1.69896 1.18008 1.26695 1.31308 0.85198 0.77804 0.78041 0.78685 1.18858 1.19377 1.18108 1.20815 0.94047 0.99126 1.08720 1.20694 0.99050 0.94225 1.04290 0.74327 0.89139 0.89036 0.90629 0.90229 0.76711 0.90056 0.93390 0.83378 0.89184 0.93155 0.76699 0.91137 0.91726 0.87665 0.87428 0.90225 0.87530 0.85216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.63 19.25 74.32 1.43 -1.20 16 2 C -0.22 -3.03 13.34 31.13 0.42 -2.61 16 3 C -0.01 -0.11 5.60 28.79 0.16 0.05 16 4 C -0.13 -1.12 4.85 30.59 0.15 -0.97 16 5 C 0.12 1.19 3.14 30.59 0.10 1.28 16 6 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 7 O -0.57 -7.78 12.82 -148.98 -1.91 -9.69 16 8 C 0.03 0.30 5.32 86.30 0.46 0.76 16 9 N -0.69 -10.61 6.45 -513.89 -3.32 -13.92 16 10 C 0.04 0.68 5.36 86.31 0.46 1.14 16 11 C 0.12 2.78 3.49 30.60 0.11 2.89 16 12 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 13 O -0.57 -13.77 12.82 -144.34 -1.85 -15.62 16 14 C 0.03 0.84 4.37 71.98 0.31 1.15 16 15 O -0.33 -13.20 10.09 -85.28 -0.86 -14.06 16 16 C 0.00 -0.02 6.71 22.79 0.15 0.13 16 17 C -0.13 -6.70 9.92 22.11 0.22 -6.48 16 18 C -0.15 -8.23 8.64 22.49 0.19 -8.04 16 19 C 0.05 3.00 5.57 -21.28 -0.12 2.88 16 20 C -0.50 -27.19 9.04 23.40 0.21 -26.98 16 21 H 0.08 3.99 7.91 -2.91 -0.02 3.96 16 22 C 0.03 1.76 5.13 85.24 0.44 2.19 16 23 N -0.83 -44.31 11.00 21.82 0.24 -44.07 16 24 Si 0.98 38.53 29.60 68.60 2.03 40.56 16 25 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 26 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 27 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 28 C -0.21 -10.12 9.74 22.48 0.22 -9.90 16 29 C -0.16 -7.11 8.96 22.11 0.20 -6.92 16 30 H 0.24 1.22 7.80 -4.41 -0.03 1.19 16 31 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 1.01 7.82 -2.39 -0.02 0.99 16 33 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.38 3.07 9.05 -74.06 -0.67 2.40 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.35 5.62 8.29 -89.69 -0.74 4.87 16 39 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.38 6.49 9.05 -74.05 -0.67 5.82 16 42 H 0.07 1.80 7.64 -2.39 -0.02 1.79 16 43 H 0.06 1.64 7.65 -2.39 -0.02 1.62 16 44 H 0.11 4.93 8.06 -2.91 -0.02 4.90 16 45 H 0.11 6.08 6.21 -2.91 -0.02 6.06 16 46 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 47 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 48 H 0.13 4.55 6.27 -2.91 -0.02 4.53 16 Total: -1.00 -68.89 407.90 -1.66 -70.55 By element: Atomic # 1 Polarization: 37.97 SS G_CDS: -1.10 Total: 36.87 kcal Atomic # 6 Polarization: -55.72 SS G_CDS: 5.11 Total: -50.61 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -3.07 Total: -57.99 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -4.62 Total: -39.37 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Total: -68.89 -1.66 -70.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843101089.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.157 kcal (2) G-P(sol) polarization free energy of solvation -68.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds