Wall clock time and date at job start Tue Mar 31 2020 17:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47183 * 2 1 4 4 C 1.52994 * 109.47216 * 300.00134 * 3 2 1 5 5 C 1.52999 * 109.47227 * 300.00012 * 4 3 2 6 6 O 1.42901 * 109.47076 * 299.99828 * 5 4 3 7 7 C 1.53006 * 109.47264 * 180.02562 * 5 4 3 8 8 N 1.46499 * 109.47024 * 185.00032 * 7 5 4 9 9 C 1.34778 * 119.99915 * 179.97438 * 8 7 5 10 10 O 1.21599 * 119.99935 * 0.02562 * 9 8 7 11 11 C 1.47532 * 120.00275 * 179.97438 * 9 8 7 12 12 C 1.39667 * 120.19370 * 0.02562 * 11 9 8 13 13 C 1.37832 * 119.91790 * 179.97438 * 12 11 9 14 14 C 1.38569 * 120.32198 * 0.02562 * 13 12 11 15 15 C 1.38027 * 120.40658 * 359.97438 * 14 13 12 16 16 C 1.38843 * 120.06562 * 359.74305 * 15 14 13 17 17 O 1.35521 * 120.15860 * 180.27100 * 16 15 14 18 18 C 1.34818 * 117.00282 * 354.39647 * 17 16 15 19 19 H 1.08000 * 119.99833 * 5.05376 * 18 17 16 20 20 C 1.38698 * 120.00324 * 185.05160 * 18 17 16 21 21 N 1.31510 * 120.00007 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99674 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46953 * 89.99863 * 22 20 18 24 24 H 1.48502 * 109.47074 * 209.99841 * 22 20 18 25 25 H 1.48501 * 109.47353 * 330.00060 * 22 20 18 26 26 C 1.52997 * 109.47356 * 60.00075 * 5 4 3 27 27 C 1.52999 * 109.46834 * 299.99785 * 26 5 4 28 28 H 1.08999 * 109.47361 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47137 * 299.99773 * 1 2 3 30 30 H 1.09000 * 109.47461 * 60.00085 * 1 2 3 31 31 H 1.08994 * 109.47363 * 120.00644 * 2 1 3 32 32 H 1.09007 * 109.46905 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.46980 * 60.00562 * 3 2 1 34 34 H 1.09000 * 109.47238 * 180.02562 * 4 3 2 35 35 H 1.08998 * 109.47380 * 59.99836 * 4 3 2 36 36 H 0.96702 * 114.00311 * 179.97438 * 6 5 4 37 37 H 1.09005 * 109.46457 * 304.99880 * 7 5 4 38 38 H 1.08997 * 109.47005 * 64.99681 * 7 5 4 39 39 H 0.96999 * 120.00444 * 359.97438 * 8 7 5 40 40 H 1.07996 * 120.04544 * 359.97438 * 12 11 9 41 41 H 1.08000 * 119.84076 * 180.02562 * 13 12 11 42 42 H 1.08000 * 119.80085 * 179.97438 * 14 13 12 43 43 H 1.07998 * 119.96931 * 180.02562 * 15 14 13 44 44 H 0.96997 * 120.00049 * 180.02562 * 21 20 18 45 45 H 1.08998 * 109.47088 * 59.99722 * 26 5 4 46 46 H 1.09000 * 109.47222 * 180.02562 * 26 5 4 47 47 H 1.09000 * 109.47181 * 179.97438 * 27 26 5 48 48 H 1.08998 * 109.47690 * 300.00121 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5300 2.1637 -1.2492 5 6 2.0399 1.4425 -2.4984 6 8 3.4689 1.4425 -2.4985 7 6 1.5304 2.1642 -3.7477 8 7 1.9179 1.4076 -4.9409 9 6 1.5743 1.8564 -6.1644 10 8 0.9431 2.8895 -6.2780 11 6 1.9650 1.0948 -7.3661 12 6 2.6905 -0.0920 -7.2404 13 6 3.0521 -0.7992 -8.3669 14 6 2.6998 -0.3384 -9.6253 15 6 1.9829 0.8328 -9.7650 16 6 1.6050 1.5553 -8.6411 17 8 0.8964 2.7026 -8.7758 18 6 0.6894 3.1505 -10.0304 19 1 1.0105 2.5588 -10.8749 20 6 0.0639 4.3712 -10.2367 21 7 -0.1385 4.8078 -11.4606 22 14 -0.4923 5.3942 -8.7761 23 1 0.6046 6.3069 -8.3647 24 1 -1.6846 6.1933 -9.1568 25 1 -0.8388 4.4957 -7.6456 26 6 1.5299 0.0001 -2.4985 27 6 2.0400 -0.7212 -1.2494 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9562 0.8900 34 1 1.8937 3.1912 -1.2494 35 1 0.4400 2.1637 -1.2492 36 1 3.8623 1.0005 -3.2634 37 1 0.4441 2.2428 -3.7041 38 1 1.9654 3.1626 -3.7933 39 1 2.4218 0.5837 -4.8504 40 1 2.9679 -0.4552 -6.2619 41 1 3.6128 -1.7170 -8.2683 42 1 2.9878 -0.8990 -10.5023 43 1 1.7117 1.1853 -10.7491 44 1 -0.5755 5.6616 -11.6049 45 1 0.4399 0.0001 -2.4985 46 1 1.8936 -0.5139 -3.3883 47 1 1.6763 -1.7488 -1.2492 48 1 3.1300 -0.7213 -1.2493 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856474710.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:17 Heat of formation + Delta-G solvation = -101.199769 kcal Electronic energy + Delta-G solvation = -29410.213884 eV Core-core repulsion = 25430.223621 eV Total energy + Delta-G solvation = -3979.990263 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.50760 -39.61530 -38.16744 -36.56204 -36.18321 -34.00668 -32.47704 -31.60932 -31.08888 -30.38424 -29.23795 -27.74148 -25.58479 -25.09451 -23.39462 -22.80233 -21.49249 -20.98609 -20.13238 -19.09997 -18.12466 -17.93060 -16.67001 -16.35719 -15.92989 -15.73957 -15.14386 -14.91874 -14.65826 -14.57623 -14.32118 -14.11763 -13.97816 -13.78379 -13.64846 -13.32276 -13.15033 -12.76429 -12.48349 -12.37590 -12.28165 -12.19475 -12.11874 -11.84280 -11.77309 -11.42163 -11.30232 -11.17939 -10.88283 -10.76357 -10.73827 -10.61883 -10.27147 -10.06955 -9.90113 -9.65191 -9.10475 -8.91400 -8.81992 -8.42052 -7.51346 -6.49345 -4.14521 1.53463 2.15052 3.30008 3.36869 3.42137 3.53002 3.64698 3.95256 4.33717 4.35049 4.39972 4.47237 4.49110 4.69998 4.77809 4.84584 4.91899 5.06739 5.06897 5.20755 5.26804 5.27763 5.33164 5.36275 5.51210 5.52560 5.57264 5.62910 5.64937 5.74045 5.76123 5.80907 5.90879 5.97455 5.99897 6.02063 6.04715 6.10172 6.25121 6.33418 6.50802 6.67859 6.78611 6.96819 7.11334 7.42190 7.44545 7.64150 7.85154 7.92515 8.80591 8.86630 9.48931 10.55729 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014263 B = 0.003294 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.588259 B = 8499.451605 C = 9962.201328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.092 4.092 3 C -0.109 4.109 4 C -0.105 4.105 5 C 0.128 3.872 6 O -0.551 6.551 7 C 0.097 3.903 8 N -0.742 5.742 9 C 0.561 3.439 10 O -0.516 6.516 11 C -0.227 4.227 12 C -0.041 4.041 13 C -0.221 4.221 14 C -0.051 4.051 15 C -0.226 4.226 16 C 0.201 3.799 17 O -0.165 6.165 18 C -0.397 4.397 19 H 0.109 0.891 20 C 0.072 3.928 21 N -0.869 5.869 22 Si 0.901 3.099 23 H -0.274 1.274 24 H -0.286 1.286 25 H -0.239 1.239 26 C -0.148 4.148 27 C -0.109 4.109 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.373 0.627 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.390 0.610 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.138 0.862 44 H 0.282 0.718 45 H 0.078 0.922 46 H 0.065 0.935 47 H 0.060 0.940 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.075 -11.981 20.025 23.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.111 4.111 3 C -0.146 4.146 4 C -0.143 4.143 5 C 0.087 3.913 6 O -0.356 6.356 7 C -0.028 4.028 8 N -0.398 5.398 9 C 0.351 3.649 10 O -0.391 6.391 11 C -0.232 4.232 12 C -0.060 4.060 13 C -0.240 4.240 14 C -0.069 4.069 15 C -0.245 4.245 16 C 0.143 3.857 17 O -0.065 6.065 18 C -0.472 4.472 19 H 0.126 0.874 20 C -0.134 4.134 21 N -0.504 5.504 22 Si 0.725 3.275 23 H -0.199 1.199 24 H -0.212 1.212 25 H -0.162 1.162 26 C -0.185 4.185 27 C -0.147 4.147 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.220 0.780 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.226 0.774 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.156 0.844 44 H 0.092 0.908 45 H 0.096 0.904 46 H 0.083 0.917 47 H 0.079 0.921 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.272 -10.502 20.506 23.432 hybrid contribution 0.086 -0.300 -0.331 0.454 sum 4.358 -10.802 20.175 23.296 Atomic orbital electron populations 1.21969 0.95486 1.01633 1.01990 1.21100 0.95709 0.96235 0.98011 1.21465 1.01500 0.94780 0.96869 1.21502 1.00714 0.99454 0.92606 1.21419 0.81208 0.94316 0.94339 1.86551 1.18652 1.81326 1.49112 1.21965 1.00827 0.96148 0.83829 1.45883 1.60346 1.27962 1.05651 1.18199 0.79203 0.84983 0.82499 1.90865 1.38650 1.23507 1.86090 1.18837 1.12915 1.00560 0.90884 1.20719 0.94912 0.92597 0.97774 1.20534 1.08629 1.02308 0.92508 1.20968 0.94560 0.94482 0.96909 1.21298 1.06030 0.97779 0.99411 1.19019 0.88181 0.86561 0.91923 1.83779 1.58904 1.32834 1.30979 1.20931 1.40219 1.05033 0.80995 0.87420 1.24494 0.95220 0.95973 0.97669 1.69633 1.39758 1.21056 1.19997 0.86194 0.78198 0.80220 0.82851 1.19905 1.21216 1.16200 1.22259 1.02258 0.95536 0.98487 1.21480 1.01142 0.98317 0.93734 0.92889 0.92854 0.92018 0.91418 0.91015 0.92110 0.90968 0.90203 0.77986 0.90998 0.90822 0.77439 0.87089 0.86988 0.86801 0.84397 0.90789 0.90359 0.91690 0.92118 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 8.50 37.15 0.32 -0.77 16 2 C -0.09 -0.68 3.20 -90.62 -0.29 -0.97 16 3 C -0.11 -0.88 5.31 -26.74 -0.14 -1.02 16 4 C -0.11 -0.95 4.67 -26.73 -0.12 -1.07 16 5 C 0.13 1.23 0.71 -90.62 -0.06 1.17 16 6 O -0.55 -5.44 11.63 -35.23 -0.41 -5.85 16 7 C 0.10 1.24 4.84 -4.04 -0.02 1.22 16 8 N -0.74 -10.33 4.98 -61.34 -0.31 -10.63 16 9 C 0.56 11.11 7.76 -12.47 -0.10 11.01 16 10 O -0.52 -12.75 15.17 -16.58 -0.25 -13.00 16 11 C -0.23 -4.51 5.89 -104.81 -0.62 -5.12 16 12 C -0.04 -0.63 9.53 -39.20 -0.37 -1.01 16 13 C -0.22 -3.31 10.03 -39.61 -0.40 -3.71 16 14 C -0.05 -0.85 10.03 -39.54 -0.40 -1.24 16 15 C -0.23 -4.71 9.16 -39.44 -0.36 -5.07 16 16 C 0.20 4.70 6.66 -38.60 -0.26 4.44 16 17 O -0.17 -4.52 6.67 -21.07 -0.14 -4.66 16 18 C -0.40 -11.33 9.95 30.90 0.31 -11.02 16 19 H 0.11 3.05 5.44 -52.49 -0.29 2.77 16 20 C 0.07 2.07 5.49 -17.52 -0.10 1.98 16 21 N -0.87 -25.24 13.96 55.48 0.77 -24.46 16 22 Si 0.90 23.25 28.62 -169.99 -4.86 18.38 16 23 H -0.27 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.24 -6.51 7.11 56.52 0.40 -6.11 16 26 C -0.15 -1.23 4.41 -26.73 -0.12 -1.35 16 27 C -0.11 -0.82 5.31 -26.73 -0.14 -0.96 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.47 4.81 -51.93 -0.25 0.22 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.65 7.68 -51.93 -0.40 0.25 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.67 6.43 -51.93 -0.33 0.34 16 36 H 0.37 2.87 8.19 45.56 0.37 3.24 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.39 4.13 4.39 -40.82 -0.18 3.95 16 40 H 0.11 1.23 6.40 -52.49 -0.34 0.90 16 41 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 42 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 43 H 0.14 2.99 5.64 -52.49 -0.30 2.70 16 44 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.08 0.69 6.43 -51.93 -0.33 0.35 16 46 H 0.06 0.51 6.58 -51.93 -0.34 0.17 16 47 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.54 7.68 -51.93 -0.40 0.14 16 LS Contribution 373.01 15.07 5.62 5.62 Total: -1.00 -33.14 373.01 -8.59 -41.73 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -6.14 Total: 6.37 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -2.87 Total: -13.50 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.47 Total: -35.10 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.80 Total: -23.51 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -4.86 Total: 18.38 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.14 -8.59 -41.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856474710.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.471 kcal (2) G-P(sol) polarization free energy of solvation -33.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds