Wall clock time and date at job start Tue Mar 31 2020 17:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47183 * 2 1 4 4 C 1.52994 * 109.47216 * 300.00134 * 3 2 1 5 5 C 1.52999 * 109.47227 * 300.00012 * 4 3 2 6 6 O 1.42901 * 109.47076 * 299.99828 * 5 4 3 7 7 C 1.53006 * 109.47264 * 180.02562 * 5 4 3 8 8 N 1.46499 * 109.47024 * 185.00032 * 7 5 4 9 9 C 1.34778 * 119.99915 * 179.97438 * 8 7 5 10 10 O 1.21599 * 119.99935 * 0.02562 * 9 8 7 11 11 C 1.47532 * 120.00275 * 179.97438 * 9 8 7 12 12 C 1.39667 * 120.19370 * 0.02562 * 11 9 8 13 13 C 1.37832 * 119.91790 * 179.97438 * 12 11 9 14 14 C 1.38569 * 120.32198 * 0.02562 * 13 12 11 15 15 C 1.38027 * 120.40658 * 359.97438 * 14 13 12 16 16 C 1.38843 * 120.06562 * 359.74305 * 15 14 13 17 17 O 1.35521 * 120.15860 * 180.27100 * 16 15 14 18 18 C 1.34818 * 117.00282 * 354.39647 * 17 16 15 19 19 H 1.08000 * 119.99833 * 5.05376 * 18 17 16 20 20 C 1.38698 * 120.00324 * 185.05160 * 18 17 16 21 21 N 1.31510 * 120.00007 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99674 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46953 * 89.99863 * 22 20 18 24 24 H 1.48502 * 109.47074 * 209.99841 * 22 20 18 25 25 H 1.48501 * 109.47353 * 330.00060 * 22 20 18 26 26 C 1.52997 * 109.47356 * 60.00075 * 5 4 3 27 27 C 1.52999 * 109.46834 * 299.99785 * 26 5 4 28 28 H 1.08999 * 109.47361 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47137 * 299.99773 * 1 2 3 30 30 H 1.09000 * 109.47461 * 60.00085 * 1 2 3 31 31 H 1.08994 * 109.47363 * 120.00644 * 2 1 3 32 32 H 1.09007 * 109.46905 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.46980 * 60.00562 * 3 2 1 34 34 H 1.09000 * 109.47238 * 180.02562 * 4 3 2 35 35 H 1.08998 * 109.47380 * 59.99836 * 4 3 2 36 36 H 0.96702 * 114.00311 * 179.97438 * 6 5 4 37 37 H 1.09005 * 109.46457 * 304.99880 * 7 5 4 38 38 H 1.08997 * 109.47005 * 64.99681 * 7 5 4 39 39 H 0.96999 * 120.00444 * 359.97438 * 8 7 5 40 40 H 1.07996 * 120.04544 * 359.97438 * 12 11 9 41 41 H 1.08000 * 119.84076 * 180.02562 * 13 12 11 42 42 H 1.08000 * 119.80085 * 179.97438 * 14 13 12 43 43 H 1.07998 * 119.96931 * 180.02562 * 15 14 13 44 44 H 0.96997 * 120.00049 * 180.02562 * 21 20 18 45 45 H 1.08998 * 109.47088 * 59.99722 * 26 5 4 46 46 H 1.09000 * 109.47222 * 180.02562 * 26 5 4 47 47 H 1.09000 * 109.47181 * 179.97438 * 27 26 5 48 48 H 1.08998 * 109.47690 * 300.00121 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5300 2.1637 -1.2492 5 6 2.0399 1.4425 -2.4984 6 8 3.4689 1.4425 -2.4985 7 6 1.5304 2.1642 -3.7477 8 7 1.9179 1.4076 -4.9409 9 6 1.5743 1.8564 -6.1644 10 8 0.9431 2.8895 -6.2780 11 6 1.9650 1.0948 -7.3661 12 6 2.6905 -0.0920 -7.2404 13 6 3.0521 -0.7992 -8.3669 14 6 2.6998 -0.3384 -9.6253 15 6 1.9829 0.8328 -9.7650 16 6 1.6050 1.5553 -8.6411 17 8 0.8964 2.7026 -8.7758 18 6 0.6894 3.1505 -10.0304 19 1 1.0105 2.5588 -10.8749 20 6 0.0639 4.3712 -10.2367 21 7 -0.1385 4.8078 -11.4606 22 14 -0.4923 5.3942 -8.7761 23 1 0.6046 6.3069 -8.3647 24 1 -1.6846 6.1933 -9.1568 25 1 -0.8388 4.4957 -7.6456 26 6 1.5299 0.0001 -2.4985 27 6 2.0400 -0.7212 -1.2494 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9562 0.8900 34 1 1.8937 3.1912 -1.2494 35 1 0.4400 2.1637 -1.2492 36 1 3.8623 1.0005 -3.2634 37 1 0.4441 2.2428 -3.7041 38 1 1.9654 3.1626 -3.7933 39 1 2.4218 0.5837 -4.8504 40 1 2.9679 -0.4552 -6.2619 41 1 3.6128 -1.7170 -8.2683 42 1 2.9878 -0.8990 -10.5023 43 1 1.7117 1.1853 -10.7491 44 1 -0.5755 5.6616 -11.6049 45 1 0.4399 0.0001 -2.4985 46 1 1.8936 -0.5139 -3.3883 47 1 1.6763 -1.7488 -1.2492 48 1 3.1300 -0.7213 -1.2493 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000856474710.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:16 Heat of formation + Delta-G solvation = -123.832976 kcal Electronic energy + Delta-G solvation = -29411.195334 eV Core-core repulsion = 25430.223621 eV Total energy + Delta-G solvation = -3980.971713 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.62234 -40.93496 -39.69442 -38.16372 -37.01378 -35.28109 -34.52920 -32.70020 -31.89288 -31.44164 -30.80316 -28.58308 -27.31314 -26.22232 -24.59505 -23.70824 -22.93494 -21.95753 -21.58812 -19.83807 -19.81324 -19.55252 -18.18940 -17.24714 -17.09816 -16.76997 -16.45769 -16.37774 -15.88714 -15.80342 -15.58750 -15.51221 -15.35071 -15.20555 -14.73374 -14.48316 -14.27739 -14.07396 -14.02617 -13.84925 -13.37366 -13.13647 -13.06858 -12.84847 -12.77495 -12.60302 -12.49974 -12.47297 -12.39378 -12.04232 -11.84408 -11.54851 -11.42162 -11.22807 -10.99510 -10.98480 -10.72712 -10.63584 -10.21736 -9.84624 -9.15562 -8.59471 -6.28106 0.04132 0.64378 1.22851 1.28315 1.56079 2.00304 2.13192 2.27737 2.74574 3.01131 3.15290 3.22464 3.52811 3.69614 3.78435 3.87279 4.01030 4.12091 4.18563 4.24998 4.25527 4.43362 4.47243 4.47887 4.56085 4.60074 4.64824 4.72588 4.80788 4.83402 4.92584 4.95671 5.01913 5.05662 5.11740 5.18290 5.27853 5.29243 5.38437 5.39942 5.46175 5.46958 5.47709 5.61208 5.64880 5.68842 5.82786 6.15029 6.55111 6.76042 6.77796 7.34792 7.57801 8.51144 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014263 B = 0.003294 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.588259 B = 8499.451605 C = 9962.201328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.092 4.092 3 C -0.104 4.104 4 C -0.110 4.110 5 C 0.142 3.858 6 O -0.557 6.557 7 C 0.096 3.904 8 N -0.711 5.711 9 C 0.555 3.445 10 O -0.573 6.573 11 C -0.234 4.234 12 C -0.029 4.029 13 C -0.188 4.188 14 C -0.042 4.042 15 C -0.251 4.251 16 C 0.161 3.839 17 O -0.210 6.210 18 C -0.403 4.403 19 H 0.092 0.908 20 C 0.026 3.974 21 N -0.911 5.911 22 Si 0.955 3.045 23 H -0.277 1.277 24 H -0.265 1.265 25 H -0.267 1.267 26 C -0.146 4.146 27 C -0.105 4.105 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.383 0.617 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.410 0.590 40 H 0.167 0.833 41 H 0.168 0.832 42 H 0.151 0.849 43 H 0.114 0.886 44 H 0.286 0.714 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.071 0.929 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.206 -16.093 22.771 28.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.110 4.110 3 C -0.141 4.141 4 C -0.148 4.148 5 C 0.101 3.899 6 O -0.364 6.364 7 C -0.028 4.028 8 N -0.368 5.368 9 C 0.345 3.655 10 O -0.453 6.453 11 C -0.238 4.238 12 C -0.047 4.047 13 C -0.206 4.206 14 C -0.060 4.060 15 C -0.270 4.270 16 C 0.107 3.893 17 O -0.114 6.114 18 C -0.479 4.479 19 H 0.110 0.890 20 C -0.174 4.174 21 N -0.551 5.551 22 Si 0.779 3.221 23 H -0.203 1.203 24 H -0.189 1.189 25 H -0.192 1.192 26 C -0.184 4.184 27 C -0.142 4.142 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.232 0.768 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.250 0.750 40 H 0.184 0.816 41 H 0.186 0.814 42 H 0.168 0.832 43 H 0.132 0.868 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.090 0.910 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.457 -14.699 23.295 28.292 hybrid contribution -0.298 0.548 -0.980 1.162 sum 6.160 -14.151 22.315 27.132 Atomic orbital electron populations 1.21962 0.95331 1.01932 1.01815 1.21112 0.95796 0.95597 0.98488 1.21424 1.00878 0.95412 0.96417 1.21556 1.01082 0.99061 0.93055 1.21286 0.81199 0.94980 0.92473 1.86560 1.18489 1.81638 1.49756 1.22076 1.00306 0.95717 0.84719 1.45566 1.58815 1.28185 1.04199 1.18419 0.78692 0.84326 0.84078 1.90852 1.41338 1.26076 1.87048 1.19270 1.12923 1.02024 0.89597 1.21338 0.92344 0.90126 1.00929 1.21248 1.05512 1.02893 0.90934 1.21455 0.92306 0.92572 0.99704 1.21339 1.08034 0.99833 0.97831 1.19790 0.88987 0.86125 0.94357 1.83769 1.62667 1.35484 1.29519 1.20900 1.40155 1.05103 0.81717 0.89016 1.25027 0.96109 0.96970 0.99283 1.69676 1.42589 1.22066 1.20791 0.85419 0.78311 0.78604 0.79720 1.20316 1.18935 1.19154 1.22255 1.02117 0.94318 0.99664 1.21460 1.01119 0.98673 0.92997 0.92339 0.92547 0.92751 0.90557 0.91853 0.91414 0.92062 0.89767 0.76764 0.91989 0.92999 0.75011 0.81566 0.81410 0.83170 0.86810 0.90433 0.90673 0.90545 0.91009 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.50 71.98 0.61 -1.19 16 2 C -0.09 -1.08 3.20 -10.79 -0.03 -1.12 16 3 C -0.10 -1.46 5.31 30.59 0.16 -1.30 16 4 C -0.11 -1.85 4.67 30.59 0.14 -1.70 16 5 C 0.14 2.43 0.71 -10.79 -0.01 2.42 16 6 O -0.56 -9.48 11.63 -148.98 -1.73 -11.21 16 7 C 0.10 2.40 4.84 86.38 0.42 2.82 16 8 N -0.71 -18.31 4.98 -466.25 -2.32 -20.63 16 9 C 0.55 21.80 7.76 86.69 0.67 22.47 16 10 O -0.57 -29.59 15.17 16.87 0.26 -29.33 16 11 C -0.23 -8.93 5.89 -19.99 -0.12 -9.05 16 12 C -0.03 -0.73 9.53 22.52 0.21 -0.52 16 13 C -0.19 -4.36 10.03 22.25 0.22 -4.13 16 14 C -0.04 -1.25 10.03 22.30 0.22 -1.03 16 15 C -0.25 -10.57 9.16 22.36 0.20 -10.36 16 16 C 0.16 7.71 6.66 22.91 0.15 7.86 16 17 O -0.21 -12.28 6.67 0.79 0.01 -12.27 16 18 C -0.40 -24.71 9.95 67.93 0.68 -24.03 16 19 H 0.09 5.68 5.44 -2.91 -0.02 5.66 16 20 C 0.03 1.61 5.49 84.85 0.47 2.08 16 21 N -0.91 -56.07 13.96 21.62 0.30 -55.77 16 22 Si 0.96 51.33 28.62 68.60 1.96 53.30 16 23 H -0.28 -14.77 7.11 99.48 0.71 -14.06 16 24 H -0.26 -12.98 7.11 99.48 0.71 -12.27 16 25 H -0.27 -15.41 7.11 99.48 0.71 -14.71 16 26 C -0.15 -1.95 4.41 30.59 0.14 -1.81 16 27 C -0.11 -1.19 5.31 30.60 0.16 -1.03 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.05 0.72 4.81 -2.39 -0.01 0.71 16 31 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 1.01 7.68 -2.38 -0.02 1.00 16 33 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 35 H 0.08 1.34 6.43 -2.39 -0.02 1.32 16 36 H 0.38 4.41 8.19 -74.06 -0.61 3.80 16 37 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.41 6.85 4.39 -92.71 -0.41 6.44 16 40 H 0.17 2.34 6.40 -2.91 -0.02 2.33 16 41 H 0.17 2.31 8.06 -2.91 -0.02 2.28 16 42 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 43 H 0.11 5.28 5.64 -2.91 -0.02 5.26 16 44 H 0.29 16.20 8.31 -92.71 -0.77 15.43 16 45 H 0.07 1.10 6.43 -2.39 -0.02 1.09 16 46 H 0.08 0.83 6.58 -2.39 -0.02 0.81 16 47 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.07 0.81 7.68 -2.39 -0.02 0.79 16 Total: -1.00 -81.18 373.01 2.77 -78.41 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -0.01 Total: 17.12 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: 4.31 Total: -19.62 kcal Atomic # 7 Polarization: -74.38 SS G_CDS: -2.02 Total: -76.40 kcal Atomic # 8 Polarization: -51.35 SS G_CDS: -1.47 Total: -52.82 kcal Atomic # 14 Polarization: 51.33 SS G_CDS: 1.96 Total: 53.30 kcal Total: -81.18 2.77 -78.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856474710.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.419 kcal (2) G-P(sol) polarization free energy of solvation -81.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds