Wall clock time and date at job start Tue Mar 31 2020 19:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46976 * 2 1 4 4 C 1.53001 * 109.47222 * 240.00891 * 2 1 3 5 5 C 1.52993 * 109.47399 * 119.99955 * 2 1 3 6 6 N 1.46504 * 109.46890 * 60.00324 * 5 2 1 7 7 C 1.34775 * 119.99825 * 179.97438 * 6 5 2 8 8 O 1.21281 * 120.00202 * 359.97438 * 7 6 5 9 9 C 1.50696 * 120.00184 * 179.97438 * 7 6 5 10 10 O 1.45197 * 109.47668 * 179.97438 * 9 7 6 11 11 C 1.34224 * 117.00446 * 179.97438 * 10 9 7 12 12 O 1.20830 * 119.99648 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00250 * 180.02562 * 11 10 9 14 14 C 1.50708 * 109.47368 * 180.02562 * 13 11 10 15 15 C 1.37631 * 120.12797 * 265.00428 * 14 13 11 16 16 C 1.38617 * 120.24935 * 179.97438 * 15 14 13 17 17 C 1.38659 * 120.49753 * 0.02562 * 16 15 14 18 18 C 1.37591 * 120.24814 * 0.02562 * 17 16 15 19 19 C 1.40703 * 120.12406 * 84.72361 * 14 13 11 20 20 C 1.41394 * 120.24704 * 0.02562 * 19 14 13 21 21 H 1.07999 * 119.99576 * 333.89506 * 20 19 14 22 22 C 1.39936 * 120.00084 * 153.89383 * 20 19 14 23 23 N 1.30823 * 120.00218 * 343.71483 * 22 20 19 24 24 Si 1.86806 * 120.00088 * 163.71714 * 22 20 19 25 25 H 1.48497 * 109.46918 * 60.00210 * 24 22 20 26 26 H 1.48502 * 109.47252 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46900 * 300.00273 * 24 22 20 28 28 H 1.09003 * 109.47077 * 299.99617 * 1 2 3 29 29 H 1.08997 * 109.47627 * 59.99603 * 1 2 3 30 30 H 1.09005 * 109.47068 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47730 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47417 * 300.00097 * 3 2 1 33 33 H 1.09003 * 109.46904 * 60.00277 * 3 2 1 34 34 H 1.09007 * 109.46356 * 299.99112 * 4 2 1 35 35 H 1.08997 * 109.47612 * 59.98885 * 4 2 1 36 36 H 1.08998 * 109.46893 * 180.02562 * 4 2 1 37 37 H 1.08996 * 109.47365 * 299.99860 * 5 2 1 38 38 H 1.09001 * 109.46990 * 180.02562 * 5 2 1 39 39 H 0.96989 * 119.99854 * 0.02562 * 6 5 2 40 40 H 1.09003 * 109.46840 * 60.00034 * 9 7 6 41 41 H 1.09006 * 109.46868 * 300.00530 * 9 7 6 42 42 H 1.09000 * 109.47361 * 300.00222 * 13 11 10 43 43 H 1.08997 * 109.47049 * 60.00152 * 13 11 10 44 44 H 1.08005 * 119.87632 * 359.97438 * 15 14 13 45 45 H 1.07993 * 119.74862 * 180.02562 * 16 15 14 46 46 H 1.07998 * 119.87354 * 180.02562 * 17 16 15 47 47 H 1.08008 * 120.12341 * 179.97438 * 18 17 16 48 48 H 0.97001 * 120.00340 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 2.0400 -0.7212 1.2492 6 7 1.5517 -2.1025 1.2491 7 6 1.8778 -2.9325 2.2596 8 8 2.5758 -2.5361 3.1688 9 6 1.3751 -4.3531 2.2600 10 8 1.8602 -5.0381 3.4448 11 6 1.4990 -6.3217 3.5975 12 8 0.8008 -6.8556 2.7683 13 6 1.9641 -7.0971 4.8031 14 6 1.4248 -8.5028 4.7350 15 6 0.2570 -8.8270 5.3871 16 6 -0.2415 -10.1190 5.3258 17 6 0.4287 -11.0985 4.6090 18 6 1.5985 -10.7972 3.9503 19 6 2.1104 -9.4872 3.9998 20 6 3.3082 -9.1644 3.3214 21 1 3.4901 -8.1495 3.0001 22 6 4.2580 -10.1600 3.0665 23 7 4.2048 -11.2959 3.7133 24 14 5.6020 -9.8670 1.8026 25 1 6.4142 -8.6915 2.2072 26 1 6.4743 -11.0660 1.7205 27 1 4.9863 -9.6103 0.4759 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1299 1.4427 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6767 -1.7488 -1.2493 35 1 1.6765 -0.2073 -2.1393 36 1 3.1300 -0.7214 -1.2491 37 1 1.6767 -0.2074 2.1392 38 1 3.1300 -0.7208 1.2493 39 1 0.9944 -2.4198 0.5215 40 1 1.7377 -4.8670 1.3697 41 1 0.2851 -4.3528 2.2606 42 1 3.0536 -7.1266 4.8180 43 1 1.6013 -6.6119 5.7092 44 1 -0.2731 -8.0719 5.9487 45 1 -1.1589 -10.3644 5.8401 46 1 0.0311 -12.1018 4.5676 47 1 2.1192 -11.5619 3.3929 48 1 4.8630 -11.9861 3.5363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859627310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:46 Heat of formation + Delta-G solvation = -123.127521 kcal Electronic energy + Delta-G solvation = -28075.351334 eV Core-core repulsion = 24094.410211 eV Total energy + Delta-G solvation = -3980.941122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.36283 -39.60553 -37.93040 -37.51745 -35.74442 -33.81444 -33.66144 -31.88077 -29.55078 -29.34355 -27.78080 -27.71707 -27.07580 -25.75466 -24.97767 -21.37760 -20.95750 -20.70305 -19.52513 -19.37776 -17.48593 -17.19267 -17.14205 -16.53290 -16.11052 -15.60115 -15.46429 -15.22522 -14.60595 -14.51684 -14.45965 -14.06028 -13.78926 -13.62930 -13.52145 -13.22945 -12.65582 -12.61802 -12.56258 -12.26491 -12.17379 -12.12600 -11.80362 -11.58274 -11.33274 -11.24609 -11.22039 -11.12128 -11.10913 -11.00978 -10.73943 -10.44659 -10.43055 -10.01498 -9.77298 -9.52744 -9.41580 -9.31942 -9.18312 -7.37788 -7.34849 -6.76978 -4.39243 2.38534 2.46587 2.80240 2.88912 2.97340 3.05781 3.09326 3.25959 3.60967 3.92371 4.19205 4.32959 4.40780 4.56529 4.63301 4.91907 5.06428 5.10125 5.14014 5.17103 5.32239 5.34228 5.38869 5.45600 5.48890 5.50760 5.61018 5.73339 5.75154 5.86061 5.88309 5.96912 6.03325 6.16247 6.25968 6.42011 6.48039 6.70278 6.87176 7.05290 7.20499 7.25455 7.37630 7.60080 7.87262 8.01313 8.02641 8.08959 8.26740 8.39645 8.60780 8.86806 8.96240 10.16918 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013911 B = 0.002557 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.268434 B =10948.282573 C =12254.862145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.140 4.140 4 C -0.145 4.145 5 C 0.131 3.869 6 N -0.729 5.729 7 C 0.516 3.484 8 O -0.515 6.515 9 C 0.046 3.954 10 O -0.343 6.343 11 C 0.460 3.540 12 O -0.493 6.493 13 C -0.039 4.039 14 C -0.196 4.196 15 C -0.076 4.076 16 C -0.240 4.240 17 C -0.104 4.104 18 C -0.158 4.158 19 C 0.130 3.870 20 C -0.458 4.458 21 H 0.074 0.926 22 C 0.078 3.922 23 N -0.792 5.792 24 Si 0.904 3.096 25 H -0.264 1.264 26 H -0.277 1.277 27 H -0.264 1.264 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.401 0.599 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.110 0.890 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.118 0.882 48 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.979 19.187 -8.283 21.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.083 4.083 3 C -0.197 4.197 4 C -0.202 4.202 5 C 0.008 3.992 6 N -0.385 5.385 7 C 0.301 3.699 8 O -0.389 6.389 9 C -0.032 4.032 10 O -0.260 6.260 11 C 0.303 3.697 12 O -0.378 6.378 13 C -0.077 4.077 14 C -0.197 4.197 15 C -0.094 4.094 16 C -0.260 4.260 17 C -0.122 4.122 18 C -0.178 4.178 19 C 0.128 3.872 20 C -0.487 4.487 21 H 0.092 0.908 22 C -0.140 4.140 23 N -0.417 5.417 24 Si 0.728 3.272 25 H -0.189 1.189 26 H -0.202 1.202 27 H -0.189 1.189 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.236 0.764 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.128 0.872 43 H 0.109 0.891 44 H 0.105 0.895 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.136 0.864 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.540 19.093 -7.842 20.942 hybrid contribution 0.223 -0.161 -1.143 1.176 sum -3.316 18.932 -8.985 21.217 Atomic orbital electron populations 1.21908 0.93936 1.02041 1.02265 1.20826 0.96346 0.96213 0.94888 1.21808 1.01378 0.94272 1.02276 1.21914 1.01516 1.00152 0.96631 1.21423 0.99368 0.80768 0.97651 1.45890 1.54793 1.12369 1.25477 1.20230 0.80673 0.86850 0.82131 1.90748 1.36226 1.76782 1.35165 1.22498 1.00542 0.90301 0.89832 1.86636 1.70208 1.26937 1.42219 1.24684 0.77458 0.78757 0.88797 1.90643 1.34985 1.68929 1.43205 1.19993 1.03470 0.92364 0.91853 1.19056 1.00268 0.92984 1.07420 1.20330 0.94899 0.95443 0.98740 1.20319 1.02048 0.94232 1.09378 1.20701 0.96106 0.96939 0.98477 1.21305 0.95563 0.97814 1.03078 1.17349 0.91123 0.90893 0.87835 1.19460 1.01026 0.95835 1.32414 0.90836 1.25878 0.98786 0.94384 0.94942 1.69804 1.32908 1.05543 1.33420 0.86431 0.80194 0.78871 0.81703 1.18853 1.20231 1.18864 0.92237 0.92203 0.92528 0.92208 0.92048 0.92232 0.92504 0.92192 0.92190 0.91248 0.91217 0.76350 0.88397 0.88593 0.87226 0.89118 0.89497 0.89494 0.89447 0.86397 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 8.30 37.16 0.31 -0.47 16 2 C -0.08 -0.49 0.78 -154.51 -0.12 -0.61 16 3 C -0.14 -0.72 8.47 37.16 0.31 -0.41 16 4 C -0.14 -0.82 8.30 37.16 0.31 -0.51 16 5 C 0.13 1.11 4.56 -4.04 -0.02 1.09 16 6 N -0.73 -6.76 4.96 -60.30 -0.30 -7.06 16 7 C 0.52 6.96 7.91 -10.99 -0.09 6.87 16 8 O -0.52 -9.13 16.50 -14.10 -0.23 -9.36 16 9 C 0.05 0.65 5.94 36.00 0.21 0.86 16 10 O -0.34 -6.27 9.75 -45.89 -0.45 -6.71 16 11 C 0.46 9.38 7.57 36.00 0.27 9.66 16 12 O -0.49 -11.22 15.78 -18.75 -0.30 -11.52 16 13 C -0.04 -0.81 5.29 -29.03 -0.15 -0.96 16 14 C -0.20 -4.69 4.43 -103.91 -0.46 -5.15 16 15 C -0.08 -1.73 9.66 -39.66 -0.38 -2.11 16 16 C -0.24 -5.50 10.05 -39.29 -0.39 -5.90 16 17 C -0.10 -2.49 10.02 -39.66 -0.40 -2.88 16 18 C -0.16 -4.17 8.68 -38.88 -0.34 -4.51 16 19 C 0.13 3.46 5.56 -106.82 -0.59 2.86 16 20 C -0.46 -12.00 8.14 -37.75 -0.31 -12.30 16 21 H 0.07 1.88 6.67 -52.49 -0.35 1.53 16 22 C 0.08 1.95 5.16 -17.35 -0.09 1.87 16 23 N -0.79 -20.27 10.95 55.55 0.61 -19.66 16 24 Si 0.90 18.83 29.59 -169.99 -5.03 13.80 16 25 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 26 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 27 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.30 6.86 -51.93 -0.36 -0.06 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.32 6.86 -51.93 -0.36 -0.04 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.40 2.70 6.16 -40.82 -0.25 2.45 16 40 H 0.10 1.27 8.13 -51.93 -0.42 0.85 16 41 H 0.10 1.16 8.13 -51.93 -0.42 0.74 16 42 H 0.11 2.25 7.08 -51.93 -0.37 1.88 16 43 H 0.09 1.58 8.05 -51.93 -0.42 1.17 16 44 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 45 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 46 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 47 H 0.12 3.18 6.20 -52.48 -0.33 2.86 16 48 H 0.28 6.58 8.30 -40.82 -0.34 6.25 16 LS Contribution 397.62 15.07 5.99 5.99 Total: -1.00 -31.99 397.62 -9.11 -41.10 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -7.48 Total: 6.03 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -1.93 Total: -12.61 kcal Atomic # 7 Polarization: -27.03 SS G_CDS: 0.31 Total: -26.72 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.98 Total: -27.59 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.99 -9.11 -41.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859627310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.028 kcal (2) G-P(sol) polarization free energy of solvation -31.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds