Wall clock time and date at job start Tue Mar 31 2020 19:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21287 * 119.99885 * 2 1 4 4 N 1.34776 * 120.00036 * 180.02562 * 2 1 3 5 5 C 1.46497 * 119.99963 * 179.97438 * 4 2 1 6 6 H 1.09000 * 109.47206 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.46998 * 60.00269 * 5 4 2 8 8 C 1.53001 * 109.47176 * 64.99935 * 7 5 4 9 9 C 1.52999 * 109.47261 * 65.00193 * 8 7 5 10 10 C 1.52996 * 109.47002 * 184.99901 * 8 7 5 11 11 C 1.50704 * 109.47368 * 299.99947 * 5 4 2 12 12 O 1.20820 * 119.99602 * 20.00071 * 11 5 4 13 13 O 1.34227 * 119.99811 * 199.99997 * 11 5 4 14 14 C 1.45206 * 116.99595 * 180.02562 * 13 11 5 15 15 C 1.50697 * 109.47055 * 179.97438 * 14 13 11 16 16 C 1.38644 * 119.75141 * 269.73093 * 15 14 13 17 17 C 1.37612 * 120.24893 * 179.72121 * 16 15 14 18 18 C 1.40719 * 119.74428 * 0.57059 * 17 16 15 19 19 C 1.41390 * 120.24298 * 179.68209 * 18 17 16 20 20 H 1.08007 * 119.99836 * 204.40470 * 19 18 17 21 21 C 1.39944 * 120.00480 * 24.40306 * 19 18 17 22 22 N 1.30829 * 119.99739 * 17.85071 * 21 19 18 23 23 Si 1.86793 * 120.00419 * 197.84584 * 21 19 18 24 24 H 1.48502 * 109.46845 * 90.00028 * 23 21 19 25 25 H 1.48500 * 109.47374 * 210.00293 * 23 21 19 26 26 H 1.48500 * 109.47135 * 330.00228 * 23 21 19 27 27 C 1.40712 * 119.50870 * 359.70266 * 18 17 16 28 28 C 1.37616 * 119.74855 * 0.02562 * 27 18 17 29 29 H 1.08996 * 109.47026 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46948 * 299.99730 * 1 2 3 31 31 H 1.08995 * 109.47384 * 59.99848 * 1 2 3 32 32 H 0.97004 * 120.00006 * 359.72666 * 4 2 1 33 33 H 1.09000 * 109.47274 * 184.99829 * 7 5 4 34 34 H 1.08995 * 109.47394 * 304.99652 * 7 5 4 35 35 H 1.08996 * 109.46924 * 304.99987 * 8 7 5 36 36 H 1.08998 * 109.46942 * 179.97438 * 9 8 7 37 37 H 1.09000 * 109.46952 * 300.00000 * 9 8 7 38 38 H 1.08995 * 109.47243 * 59.99486 * 9 8 7 39 39 H 1.09005 * 109.47620 * 59.99861 * 10 8 7 40 40 H 1.08998 * 109.47311 * 179.97438 * 10 8 7 41 41 H 1.09005 * 109.47498 * 300.00064 * 10 8 7 42 42 H 1.08997 * 109.47326 * 300.00223 * 14 13 11 43 43 H 1.09002 * 109.46839 * 60.00048 * 14 13 11 44 44 H 1.08006 * 119.87048 * 359.97438 * 16 15 14 45 45 H 1.07995 * 120.13091 * 180.27746 * 17 16 15 46 46 H 0.96992 * 120.00001 * 179.97438 * 22 21 19 47 47 H 1.08005 * 120.12862 * 179.97438 * 27 18 17 48 48 H 1.07998 * 119.87516 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 1 4.0092 -2.1948 -0.0019 7 6 4.1563 -0.4463 1.2482 8 6 3.7520 -1.2368 2.4942 9 6 4.4617 -2.5922 2.4908 10 6 4.1526 -0.4546 3.7466 11 6 4.1478 -0.4565 -1.2316 12 8 3.4219 0.3022 -1.8293 13 8 5.4012 -0.6664 -1.6635 14 6 5.8170 0.0523 -2.8548 15 6 7.2427 -0.3063 -3.1857 16 6 8.2815 0.4441 -2.6565 17 6 9.5875 0.1223 -2.9474 18 6 9.8662 -0.9657 -3.7951 19 6 11.2039 -1.3015 -4.1064 20 1 11.4281 -1.8388 -5.0161 21 6 12.2374 -0.9379 -3.2358 22 7 11.9659 -0.6115 -1.9983 23 14 14.0047 -0.9185 -3.8404 24 1 14.3265 0.4247 -4.3857 25 1 14.9179 -1.2259 -2.7105 26 1 14.1746 -1.9390 -4.9058 27 6 8.8037 -1.7167 -4.3310 28 6 7.5056 -1.3802 -4.0220 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.6959 -2.0073 0.0031 33 1 5.2426 -0.3680 1.2042 34 1 3.7218 0.5523 1.2945 35 1 2.6731 -1.3915 2.4920 36 1 4.1740 -3.1551 3.3787 37 1 4.1763 -3.1495 1.5985 38 1 5.5406 -2.4375 2.4928 39 1 3.6471 0.5112 3.7491 40 1 3.8642 -1.0175 4.6343 41 1 5.2316 -0.2998 3.7487 42 1 5.1702 -0.2213 -3.6884 43 1 5.7447 1.1250 -2.6756 44 1 8.0649 1.2820 -2.0102 45 1 10.3952 0.7054 -2.5305 46 1 12.6822 -0.3599 -1.3948 47 1 9.0062 -2.5536 -4.9831 48 1 6.6886 -1.9554 -4.4319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860292147.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:53 Heat of formation + Delta-G solvation = -140.055057 kcal Electronic energy + Delta-G solvation = -28567.645053 eV Core-core repulsion = 24585.969898 eV Total energy + Delta-G solvation = -3981.675155 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.97188 -40.40204 -39.42520 -37.81640 -37.36319 -35.69331 -35.11758 -32.70129 -31.83848 -31.25174 -29.51258 -28.81189 -28.01451 -26.24950 -25.12805 -22.98251 -22.67603 -21.86456 -21.41984 -20.59009 -19.28458 -18.92836 -18.06890 -17.85962 -17.37066 -17.13092 -16.56339 -16.35715 -15.86601 -15.68137 -15.50468 -15.41341 -14.84959 -14.69031 -14.49905 -14.17895 -13.92377 -13.85093 -13.55514 -13.54886 -13.37124 -13.21903 -13.06339 -12.89304 -12.81928 -12.70614 -12.68093 -12.59448 -12.12848 -11.93540 -11.75822 -11.72611 -11.59363 -11.54178 -11.42509 -11.30334 -11.06787 -10.64630 -10.19810 -9.45897 -9.34729 -8.69732 -6.40878 0.70185 1.09016 1.17358 1.37320 1.41278 1.52027 1.63985 1.98216 2.18767 2.32954 2.71089 3.57677 3.67660 3.77997 3.87200 4.00040 4.06257 4.06612 4.10575 4.12152 4.40209 4.44561 4.47729 4.52383 4.54139 4.66419 4.69344 4.76985 4.86612 4.98773 4.99304 5.05710 5.06751 5.10662 5.11748 5.27862 5.28364 5.35382 5.37535 5.42991 5.52686 5.53403 5.63164 5.86355 6.04039 6.12768 6.29688 6.59922 6.62607 6.77677 6.87030 6.95526 7.39129 8.26954 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016628 B = 0.002500 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.525615 B =11198.721571 C =12225.744362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.504 3.496 3 O -0.573 6.573 4 N -0.705 5.705 5 C 0.165 3.835 6 H 0.151 0.849 7 C -0.125 4.125 8 C -0.080 4.080 9 C -0.152 4.152 10 C -0.148 4.148 11 C 0.435 3.565 12 O -0.520 6.520 13 O -0.361 6.361 14 C 0.144 3.856 15 C -0.230 4.230 16 C -0.082 4.082 17 C -0.193 4.193 18 C 0.088 3.912 19 C -0.491 4.491 20 H 0.081 0.919 21 C 0.034 3.966 22 N -0.818 5.818 23 Si 0.986 3.014 24 H -0.263 1.263 25 H -0.267 1.267 26 H -0.256 1.256 27 C -0.243 4.243 28 C -0.063 4.063 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.427 0.573 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.046 0.954 39 H 0.045 0.955 40 H 0.072 0.928 41 H 0.048 0.952 42 H 0.071 0.929 43 H 0.055 0.945 44 H 0.099 0.901 45 H 0.104 0.896 46 H 0.291 0.709 47 H 0.106 0.894 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.568 -5.671 9.894 21.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.293 3.707 3 O -0.451 6.451 4 N -0.362 5.362 5 C 0.057 3.943 6 H 0.169 0.831 7 C -0.163 4.163 8 C -0.098 4.098 9 C -0.209 4.209 10 C -0.205 4.205 11 C 0.277 3.723 12 O -0.408 6.408 13 O -0.278 6.278 14 C 0.071 3.929 15 C -0.231 4.231 16 C -0.101 4.101 17 C -0.212 4.212 18 C 0.086 3.914 19 C -0.520 4.520 20 H 0.100 0.900 21 C -0.182 4.182 22 N -0.443 5.443 23 Si 0.806 3.194 24 H -0.188 1.188 25 H -0.191 1.191 26 H -0.179 1.179 27 C -0.262 4.262 28 C -0.081 4.081 29 H 0.129 0.871 30 H 0.122 0.878 31 H 0.108 0.892 32 H 0.267 0.733 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.091 0.909 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.074 0.926 44 H 0.118 0.882 45 H 0.122 0.878 46 H 0.101 0.899 47 H 0.124 0.876 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.246 -4.625 9.905 21.270 hybrid contribution 0.881 0.213 -0.475 1.023 sum -17.365 -4.412 9.431 20.247 Atomic orbital electron populations 1.21837 0.88074 1.06504 1.05470 1.21616 0.92245 0.83023 0.73811 1.90719 1.71650 1.33347 1.49359 1.45773 1.04226 1.10139 1.76057 1.20606 0.82587 1.02226 0.88844 0.83144 1.21974 1.01175 1.00259 0.92908 1.20994 1.01142 0.95215 0.92479 1.21953 1.00275 0.95825 1.02883 1.21829 1.01215 0.99874 0.97590 1.24907 0.80090 0.80601 0.86733 1.90647 1.57632 1.35024 1.57518 1.86670 1.31118 1.65067 1.44909 1.21473 0.92617 0.94524 0.84240 1.18950 0.92097 1.03571 1.08481 1.20742 0.92925 0.98478 0.97913 1.21251 0.95033 0.99747 1.05178 1.18039 0.93775 0.89730 0.89887 1.19938 0.91699 1.33521 1.06807 0.90045 1.26847 1.06157 0.91449 0.93738 1.69879 1.37222 1.32074 1.05092 0.85149 0.75233 0.79904 0.79132 1.18758 1.19132 1.17926 1.21179 0.92728 1.02970 1.09341 1.20681 0.96012 0.95012 0.96404 0.87068 0.87813 0.89231 0.73325 0.91468 0.91699 0.89698 0.91041 0.91449 0.93441 0.93590 0.90862 0.93302 0.91085 0.92639 0.88249 0.87809 0.89865 0.87625 0.86297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 10.39 71.24 0.74 -1.14 16 2 C 0.50 11.25 6.70 87.66 0.59 11.84 16 3 O -0.57 -19.67 12.96 19.40 0.25 -19.42 16 4 N -0.71 -12.00 4.57 -446.09 -2.04 -14.03 16 5 C 0.16 3.75 2.99 44.25 0.13 3.88 16 6 H 0.15 2.53 6.35 -2.39 -0.02 2.51 16 7 C -0.12 -2.97 4.01 30.59 0.12 -2.84 16 8 C -0.08 -1.31 2.86 -10.80 -0.03 -1.34 16 9 C -0.15 -2.14 8.95 71.98 0.64 -1.49 16 10 C -0.15 -2.48 9.19 71.98 0.66 -1.82 16 11 C 0.43 14.68 6.95 71.24 0.49 15.18 16 12 O -0.52 -20.60 13.43 29.42 0.40 -20.21 16 13 O -0.36 -13.65 10.20 -51.39 -0.52 -14.18 16 14 C 0.14 5.72 5.58 71.23 0.40 6.12 16 15 C -0.23 -10.35 5.54 -19.68 -0.11 -10.46 16 16 C -0.08 -4.00 9.67 22.22 0.21 -3.79 16 17 C -0.19 -10.36 8.70 22.73 0.20 -10.16 16 18 C 0.09 4.79 5.57 -21.29 -0.12 4.67 16 19 C -0.49 -26.21 9.05 23.46 0.21 -25.99 16 20 H 0.08 4.15 7.91 -2.91 -0.02 4.13 16 21 C 0.03 1.70 5.14 85.26 0.44 2.14 16 22 N -0.82 -42.51 10.95 21.83 0.24 -42.27 16 23 Si 0.99 37.53 29.59 68.60 2.03 39.56 16 24 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 25 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 26 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 27 C -0.24 -11.91 9.80 22.73 0.22 -11.69 16 28 C -0.06 -2.80 9.67 22.22 0.21 -2.58 16 29 H 0.11 0.44 7.91 -2.39 -0.02 0.42 16 30 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.43 3.26 8.67 -92.71 -0.80 2.46 16 33 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16 34 H 0.06 1.93 6.04 -2.39 -0.01 1.92 16 35 H 0.08 1.15 7.62 -2.39 -0.02 1.13 16 36 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.07 0.78 6.46 -2.39 -0.02 0.77 16 38 H 0.05 0.81 8.14 -2.39 -0.02 0.80 16 39 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.07 2.63 8.07 -2.39 -0.02 2.61 16 43 H 0.06 2.24 8.07 -2.39 -0.02 2.22 16 44 H 0.10 4.49 8.06 -2.91 -0.02 4.47 16 45 H 0.10 5.80 6.15 -2.91 -0.02 5.79 16 46 H 0.29 13.59 8.30 -92.71 -0.77 12.82 16 47 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 48 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -73.60 394.67 5.54 -68.06 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: 0.16 Total: 31.96 kcal Atomic # 6 Polarization: -34.50 SS G_CDS: 5.02 Total: -29.48 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -1.80 Total: -56.30 kcal Atomic # 8 Polarization: -53.92 SS G_CDS: 0.12 Total: -53.80 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 2.03 Total: 39.56 kcal Total: -73.60 5.54 -68.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860292147.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.990 kcal (2) G-P(sol) polarization free energy of solvation -73.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds