Wall clock time and date at job start Tue Mar 31 2020 18:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.46645 * 2 1 4 4 C 1.38280 * 119.93225 * 269.72388 * 3 2 1 5 5 C 1.38113 * 120.07358 * 179.72674 * 4 3 2 6 6 C 1.38880 * 119.92813 * 0.57142 * 5 4 3 7 7 N 1.39883 * 120.07217 * 179.72764 * 6 5 4 8 8 C 1.34779 * 119.99861 * 220.97429 * 7 6 5 9 9 S 1.71202 * 119.99979 * 5.93951 * 8 7 6 10 10 N 1.34778 * 119.99983 * 185.93956 * 8 7 6 11 11 C 1.47078 * 120.88065 * 5.30440 * 10 8 7 12 12 C 1.53689 * 108.27772 * 128.75414 * 11 10 8 13 13 N 1.46901 * 109.25634 * 54.08309 * 12 11 10 14 14 C 1.46906 * 110.99940 * 172.61034 * 13 12 11 15 15 C 1.50701 * 109.47044 * 294.29725 * 14 13 12 16 16 H 1.08007 * 119.99675 * 0.02562 * 15 14 13 17 17 C 1.37870 * 120.00452 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99837 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00307 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46991 * 60.00783 * 19 17 15 21 21 H 1.48497 * 109.46979 * 180.02562 * 19 17 15 22 22 H 1.48491 * 109.47202 * 300.00480 * 19 17 15 23 23 C 1.46895 * 111.26638 * 296.75506 * 13 12 11 24 24 C 1.47081 * 120.87896 * 185.58047 * 10 8 7 25 25 C 1.38882 * 119.85458 * 359.70326 * 6 5 4 26 26 C 1.38111 * 119.93023 * 0.02562 * 25 6 5 27 27 H 1.08999 * 109.47367 * 59.99988 * 1 2 3 28 28 H 1.08999 * 109.47636 * 299.99742 * 1 2 3 29 29 H 1.09007 * 109.46865 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47367 * 120.00012 * 2 1 3 31 31 H 1.08998 * 109.47118 * 240.00314 * 2 1 3 32 32 H 1.08003 * 119.96141 * 0.02562 * 4 3 2 33 33 H 1.07999 * 120.03233 * 180.27600 * 5 4 3 34 34 H 0.96999 * 120.00159 * 40.96771 * 7 6 5 35 35 H 1.09001 * 109.62595 * 248.52402 * 11 10 8 36 36 H 1.09003 * 109.63152 * 9.10157 * 11 10 8 37 37 H 1.09004 * 109.64862 * 294.07569 * 12 11 10 38 38 H 1.09004 * 109.42086 * 173.94422 * 12 11 10 39 39 H 1.08993 * 109.47170 * 54.29669 * 14 13 12 40 40 H 1.08997 * 109.47212 * 174.30400 * 14 13 12 41 41 H 0.97000 * 119.99875 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.49449 * 303.14484 * 23 13 12 43 43 H 1.09003 * 109.49077 * 183.07202 * 23 13 12 44 44 H 1.08997 * 109.63334 * 350.89455 * 24 10 8 45 45 H 1.09000 * 109.62908 * 111.48256 * 24 10 8 46 46 H 1.08001 * 120.03376 * 179.97438 * 25 6 5 47 47 H 1.08002 * 119.96193 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2676 2.0694 -1.1983 5 6 2.7225 3.3735 -1.2018 6 6 2.9549 4.0295 0.0001 7 7 3.4210 5.3483 0.0001 8 6 4.3676 5.7285 0.8811 9 16 5.1083 4.5660 1.8964 10 7 4.7309 7.0238 0.9627 11 6 4.0285 8.0553 0.1845 12 6 3.6155 9.1840 1.1424 13 7 4.7989 9.6565 1.8732 14 6 4.4839 10.8499 2.6700 15 6 4.1422 11.9928 1.7492 16 1 4.1571 11.8471 0.6791 17 6 3.8095 13.2241 2.2726 18 7 3.7909 13.4014 3.5757 19 14 3.3866 14.6411 1.1312 20 1 2.2107 14.2745 0.3017 21 1 3.0681 15.8473 1.9365 22 1 4.5453 14.9279 0.2479 23 6 5.3635 8.5945 2.7165 24 6 5.8443 7.4424 1.8279 25 6 2.7229 3.3733 1.2019 26 6 2.2626 2.0711 1.1985 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 2.0909 1.5573 -2.1327 33 1 2.9019 3.8809 -2.1381 34 1 3.0632 5.9892 -0.6340 35 1 4.6925 8.4488 -0.5852 36 1 3.1413 7.6237 -0.2790 37 1 2.8754 8.8113 1.8505 38 1 3.1890 10.0076 0.5696 39 1 3.6339 10.6395 3.3189 40 1 5.3475 11.1191 3.2781 41 1 3.5572 14.2678 3.9440 42 1 4.5992 8.2300 3.4028 43 1 6.2047 8.9904 3.2856 44 1 6.1582 6.6053 2.4515 45 1 6.6794 7.7781 1.2131 46 1 2.9030 3.8805 2.1383 47 1 2.0817 1.5605 2.1328 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865267939.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:22 Heat of formation + Delta-G solvation = 56.923500 kcal Electronic energy + Delta-G solvation = -25719.373252 eV Core-core repulsion = 22221.285351 eV Total energy + Delta-G solvation = -3498.087902 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.56228 -39.37497 -37.29810 -35.22177 -33.38955 -32.52382 -31.24811 -31.11153 -29.38946 -28.12531 -26.04066 -24.33439 -24.11284 -23.27870 -22.49754 -21.63748 -20.96953 -19.89893 -18.61405 -18.01390 -16.52745 -16.17318 -15.86074 -15.76488 -15.08423 -14.86214 -14.65677 -14.60238 -14.24843 -14.07098 -13.94568 -13.73898 -13.60481 -13.46925 -13.03672 -12.59498 -12.47241 -12.16510 -11.82543 -11.54673 -11.52059 -11.38835 -11.27887 -11.18656 -11.10034 -11.03847 -10.87982 -10.74256 -10.64907 -10.03682 -9.70201 -9.35753 -9.09515 -8.58228 -8.31250 -7.72486 -7.52191 -7.07536 -6.16435 -4.19777 0.83595 1.34100 1.59091 1.86639 2.51256 3.04034 3.22769 3.28654 3.29856 3.64638 4.27373 4.47327 4.55949 4.62776 4.78860 4.84585 4.91713 5.04413 5.06044 5.10253 5.19597 5.23700 5.28006 5.30934 5.36432 5.40853 5.51899 5.59151 5.63356 5.74045 5.85768 5.88508 5.91793 6.06062 6.09848 6.16242 6.19643 6.22216 6.30737 6.47088 6.52708 6.68349 6.92824 7.05288 7.11729 7.15005 7.58992 7.83448 7.96062 8.31233 8.86246 9.45229 10.94068 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.021770 B = 0.002285 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.857868 B =12250.188755 C =12828.324760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.083 4.083 4 C -0.114 4.114 5 C -0.125 4.125 6 C 0.130 3.870 7 N -0.639 5.639 8 C 0.562 3.438 9 S -0.645 6.645 10 N -0.551 5.551 11 C 0.093 3.907 12 C 0.054 3.946 13 N -0.536 5.536 14 C 0.194 3.806 15 C -0.515 4.515 16 H 0.063 0.937 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.900 3.100 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.041 3.959 24 C 0.107 3.893 25 C -0.068 4.068 26 C -0.110 4.110 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.405 0.595 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.029 0.971 38 H 0.104 0.896 39 H -0.007 1.007 40 H 0.035 0.965 41 H 0.264 0.736 42 H 0.032 0.968 43 H 0.090 0.910 44 H 0.125 0.875 45 H 0.085 0.915 46 H 0.144 0.856 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.033 -21.475 -9.675 24.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.084 4.084 4 C -0.133 4.133 5 C -0.146 4.146 6 C 0.037 3.963 7 N -0.267 5.267 8 C 0.204 3.796 9 S -0.513 6.513 10 N -0.257 5.257 11 C -0.032 4.032 12 C -0.076 4.076 13 N -0.261 5.261 14 C 0.070 3.930 15 C -0.553 4.553 16 H 0.081 0.919 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.727 3.273 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.201 1.201 23 C -0.088 4.088 24 C -0.016 4.016 25 C -0.090 4.090 26 C -0.129 4.129 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.246 0.754 35 H 0.111 0.889 36 H 0.093 0.907 37 H 0.048 0.952 38 H 0.122 0.878 39 H 0.011 0.989 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.051 0.949 43 H 0.109 0.891 44 H 0.143 0.857 45 H 0.103 0.897 46 H 0.161 0.839 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.164 -21.785 -9.177 24.003 hybrid contribution -1.320 1.764 -0.853 2.362 sum -5.484 -20.021 -10.030 23.054 Atomic orbital electron populations 1.21752 0.94811 1.01577 1.02259 1.20530 0.96052 0.92743 1.02841 1.19908 0.99083 0.96216 0.93170 1.20675 1.01165 0.93868 0.97618 1.20807 1.02626 0.95088 0.96036 1.17394 1.00837 0.83467 0.94631 1.42329 1.38252 1.11406 1.34736 1.22361 0.82936 0.88037 0.86272 1.93290 1.65303 1.44610 1.48067 1.47606 1.33007 1.02880 1.42172 1.22472 0.96503 0.88662 0.95566 1.22374 0.92683 0.96007 0.96530 1.62153 1.28721 1.05638 1.29607 1.19739 0.95759 0.85276 0.92263 1.21053 1.46421 0.94586 0.93280 0.91925 1.24998 0.95524 0.98834 0.95139 1.69942 1.48379 1.24292 1.10743 0.86540 0.78845 0.81409 0.80488 1.20295 1.21268 1.20099 1.22434 1.00322 0.91616 0.94429 1.22557 0.86455 0.99069 0.93497 1.21391 0.94073 0.95465 0.98096 1.20833 1.00099 0.94422 0.97585 0.92616 0.92473 0.92533 0.90975 0.91155 0.85915 0.86048 0.75434 0.88905 0.90726 0.95243 0.87759 0.98920 0.94703 0.92668 0.94931 0.89128 0.85748 0.89699 0.83858 0.85789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.89 37.16 0.37 -0.55 16 2 C -0.08 -0.59 6.06 -27.88 -0.17 -0.76 16 3 C -0.08 -0.78 5.14 -104.59 -0.54 -1.31 16 4 C -0.11 -1.03 9.69 -39.61 -0.38 -1.41 16 5 C -0.12 -1.22 9.97 -39.39 -0.39 -1.61 16 6 C 0.13 1.52 5.93 -83.71 -0.50 1.03 16 7 N -0.64 -7.27 5.17 -11.40 -0.06 -7.33 16 8 C 0.56 7.90 7.48 -86.91 -0.65 7.25 16 9 S -0.65 -11.08 24.28 -107.50 -2.61 -13.69 16 10 N -0.55 -7.48 3.00 -174.20 -0.52 -8.01 16 11 C 0.09 1.14 6.51 -3.37 -0.02 1.12 16 12 C 0.05 0.88 5.47 -3.47 -0.02 0.86 16 13 N -0.54 -10.26 4.62 -235.47 -1.09 -11.35 16 14 C 0.19 4.69 4.72 -4.97 -0.02 4.67 16 15 C -0.51 -13.41 8.41 -34.44 -0.29 -13.70 16 16 H 0.06 1.58 7.13 -52.48 -0.37 1.21 16 17 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.89 -25.50 13.29 55.43 0.74 -24.76 16 19 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 C 0.04 0.69 5.62 -3.70 -0.02 0.67 16 24 C 0.11 1.53 6.51 -3.60 -0.02 1.51 16 25 C -0.07 -0.86 7.86 -39.39 -0.31 -1.17 16 26 C -0.11 -1.18 9.69 -39.61 -0.38 -1.56 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 31 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 32 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 33 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.41 3.53 6.49 -40.82 -0.27 3.27 16 35 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.07 0.69 5.86 -51.93 -0.30 0.38 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.10 1.82 6.67 -51.93 -0.35 1.47 16 39 H -0.01 -0.19 8.12 -51.93 -0.42 -0.61 16 40 H 0.03 0.91 7.97 -51.93 -0.41 0.49 16 41 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 1.47 7.99 -51.93 -0.41 1.05 16 44 H 0.12 1.87 5.99 -50.66 -0.30 1.57 16 45 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.14 2.07 6.19 -48.24 -0.30 1.78 16 47 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 383.69 15.07 5.78 5.78 Total: -1.00 -30.99 383.69 -13.58 -44.57 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -7.34 Total: 2.80 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -3.45 Total: -3.53 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: -0.93 Total: -51.45 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: -11.08 SS G_CDS: -2.61 Total: -13.69 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.99 -13.58 -44.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865267939.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.494 kcal (2) G-P(sol) polarization free energy of solvation -30.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds