Wall clock time and date at job start Tue Mar 31 2020 18:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.46645 * 2 1 4 4 C 1.38280 * 119.93225 * 269.72388 * 3 2 1 5 5 C 1.38113 * 120.07358 * 179.72674 * 4 3 2 6 6 C 1.38880 * 119.92813 * 0.57142 * 5 4 3 7 7 N 1.39883 * 120.07217 * 179.72764 * 6 5 4 8 8 C 1.34779 * 119.99861 * 220.97429 * 7 6 5 9 9 S 1.71202 * 119.99979 * 5.93951 * 8 7 6 10 10 N 1.34778 * 119.99983 * 185.93956 * 8 7 6 11 11 C 1.47078 * 120.88065 * 5.30440 * 10 8 7 12 12 C 1.53689 * 108.27772 * 128.75414 * 11 10 8 13 13 N 1.46901 * 109.25634 * 54.08309 * 12 11 10 14 14 C 1.46906 * 110.99940 * 172.61034 * 13 12 11 15 15 C 1.50701 * 109.47044 * 294.29725 * 14 13 12 16 16 H 1.08007 * 119.99675 * 0.02562 * 15 14 13 17 17 C 1.37870 * 120.00452 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99837 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00307 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46991 * 60.00783 * 19 17 15 21 21 H 1.48497 * 109.46979 * 180.02562 * 19 17 15 22 22 H 1.48491 * 109.47202 * 300.00480 * 19 17 15 23 23 C 1.46895 * 111.26638 * 296.75506 * 13 12 11 24 24 C 1.47081 * 120.87896 * 185.58047 * 10 8 7 25 25 C 1.38882 * 119.85458 * 359.70326 * 6 5 4 26 26 C 1.38111 * 119.93023 * 0.02562 * 25 6 5 27 27 H 1.08999 * 109.47367 * 59.99988 * 1 2 3 28 28 H 1.08999 * 109.47636 * 299.99742 * 1 2 3 29 29 H 1.09007 * 109.46865 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47367 * 120.00012 * 2 1 3 31 31 H 1.08998 * 109.47118 * 240.00314 * 2 1 3 32 32 H 1.08003 * 119.96141 * 0.02562 * 4 3 2 33 33 H 1.07999 * 120.03233 * 180.27600 * 5 4 3 34 34 H 0.96999 * 120.00159 * 40.96771 * 7 6 5 35 35 H 1.09001 * 109.62595 * 248.52402 * 11 10 8 36 36 H 1.09003 * 109.63152 * 9.10157 * 11 10 8 37 37 H 1.09004 * 109.64862 * 294.07569 * 12 11 10 38 38 H 1.09004 * 109.42086 * 173.94422 * 12 11 10 39 39 H 1.08993 * 109.47170 * 54.29669 * 14 13 12 40 40 H 1.08997 * 109.47212 * 174.30400 * 14 13 12 41 41 H 0.97000 * 119.99875 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.49449 * 303.14484 * 23 13 12 43 43 H 1.09003 * 109.49077 * 183.07202 * 23 13 12 44 44 H 1.08997 * 109.63334 * 350.89455 * 24 10 8 45 45 H 1.09000 * 109.62908 * 111.48256 * 24 10 8 46 46 H 1.08001 * 120.03376 * 179.97438 * 25 6 5 47 47 H 1.08002 * 119.96193 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2676 2.0694 -1.1983 5 6 2.7225 3.3735 -1.2018 6 6 2.9549 4.0295 0.0001 7 7 3.4210 5.3483 0.0001 8 6 4.3676 5.7285 0.8811 9 16 5.1083 4.5660 1.8964 10 7 4.7309 7.0238 0.9627 11 6 4.0285 8.0553 0.1845 12 6 3.6155 9.1840 1.1424 13 7 4.7989 9.6565 1.8732 14 6 4.4839 10.8499 2.6700 15 6 4.1422 11.9928 1.7492 16 1 4.1571 11.8471 0.6791 17 6 3.8095 13.2241 2.2726 18 7 3.7909 13.4014 3.5757 19 14 3.3866 14.6411 1.1312 20 1 2.2107 14.2745 0.3017 21 1 3.0681 15.8473 1.9365 22 1 4.5453 14.9279 0.2479 23 6 5.3635 8.5945 2.7165 24 6 5.8443 7.4424 1.8279 25 6 2.7229 3.3733 1.2019 26 6 2.2626 2.0711 1.1985 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 2.0909 1.5573 -2.1327 33 1 2.9019 3.8809 -2.1381 34 1 3.0632 5.9892 -0.6340 35 1 4.6925 8.4488 -0.5852 36 1 3.1413 7.6237 -0.2790 37 1 2.8754 8.8113 1.8505 38 1 3.1890 10.0076 0.5696 39 1 3.6339 10.6395 3.3189 40 1 5.3475 11.1191 3.2781 41 1 3.5572 14.2678 3.9440 42 1 4.5992 8.2300 3.4028 43 1 6.2047 8.9904 3.2856 44 1 6.1582 6.6053 2.4515 45 1 6.6794 7.7781 1.2131 46 1 2.9030 3.8805 2.1383 47 1 2.0817 1.5605 2.1328 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865267939.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:21 Heat of formation + Delta-G solvation = 40.227001 kcal Electronic energy + Delta-G solvation = -25720.097267 eV Core-core repulsion = 22221.285351 eV Total energy + Delta-G solvation = -3498.811916 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.58840 -40.39220 -38.45321 -36.45905 -34.71569 -33.91365 -32.46835 -31.91550 -30.67919 -29.24791 -27.59331 -25.66451 -25.06891 -24.17686 -23.76347 -23.02977 -21.75498 -21.16239 -19.66105 -19.07285 -18.48703 -17.34165 -16.77157 -16.67762 -16.52658 -16.15996 -16.05759 -15.75038 -15.49336 -15.40035 -14.88223 -14.67518 -14.42648 -14.25011 -14.16706 -13.90820 -13.65662 -13.31217 -13.07119 -12.92191 -12.73237 -12.62935 -12.51892 -12.48033 -12.43472 -12.18825 -12.08325 -11.85063 -11.81341 -11.65427 -11.34704 -10.66529 -10.61094 -9.92365 -9.32953 -9.12560 -8.95555 -8.31914 -8.21877 -6.33041 -0.15271 0.53443 0.60980 0.75749 1.37694 1.42568 1.45263 1.52915 2.05461 2.38856 2.84955 3.05754 3.13432 3.58984 3.81915 3.87291 3.94611 3.96766 4.07999 4.10785 4.22397 4.28461 4.32643 4.50111 4.50874 4.61038 4.63501 4.70008 4.71992 4.78521 4.80702 4.87125 5.04407 5.11318 5.13740 5.14853 5.16718 5.22705 5.26906 5.40667 5.46276 5.52261 5.60980 5.67201 5.78190 5.97736 6.05628 6.15590 6.24535 6.45847 6.82144 7.37188 8.88819 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.021770 B = 0.002285 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.857868 B =12250.188755 C =12828.324760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 C -0.080 4.080 4 C -0.114 4.114 5 C -0.118 4.118 6 C 0.106 3.894 7 N -0.618 5.618 8 C 0.578 3.422 9 S -0.712 6.712 10 N -0.551 5.551 11 C 0.104 3.896 12 C 0.052 3.948 13 N -0.535 5.535 14 C 0.208 3.792 15 C -0.522 4.522 16 H 0.072 0.928 17 C 0.000 4.000 18 N -0.935 5.935 19 Si 0.971 3.029 20 H -0.264 1.264 21 H -0.289 1.289 22 H -0.267 1.267 23 C 0.045 3.955 24 C 0.120 3.880 25 C -0.087 4.087 26 C -0.122 4.122 27 H 0.057 0.943 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.152 0.848 33 H 0.148 0.852 34 H 0.421 0.579 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.015 0.985 38 H 0.097 0.903 39 H -0.041 1.041 40 H 0.007 0.993 41 H 0.264 0.736 42 H 0.016 0.984 43 H 0.090 0.910 44 H 0.119 0.881 45 H 0.100 0.900 46 H 0.116 0.884 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.914 -22.482 -13.480 26.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.081 4.081 4 C -0.133 4.133 5 C -0.139 4.139 6 C 0.013 3.987 7 N -0.246 5.246 8 C 0.217 3.783 9 S -0.581 6.581 10 N -0.257 5.257 11 C -0.020 4.020 12 C -0.077 4.077 13 N -0.260 5.260 14 C 0.082 3.918 15 C -0.560 4.560 16 H 0.091 0.909 17 C -0.198 4.198 18 N -0.576 5.576 19 Si 0.795 3.205 20 H -0.189 1.189 21 H -0.215 1.215 22 H -0.192 1.192 23 C -0.084 4.084 24 C -0.003 4.003 25 C -0.109 4.109 26 C -0.142 4.142 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.170 0.830 33 H 0.165 0.835 34 H 0.265 0.735 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.033 0.967 38 H 0.115 0.885 39 H -0.023 1.023 40 H 0.025 0.975 41 H 0.072 0.928 42 H 0.035 0.965 43 H 0.108 0.892 44 H 0.137 0.863 45 H 0.118 0.882 46 H 0.134 0.866 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.078 -22.826 -13.030 26.769 hybrid contribution -1.118 1.970 0.335 2.290 sum -6.196 -20.855 -12.695 25.189 Atomic orbital electron populations 1.21734 0.94109 1.02383 1.01947 1.20589 0.96548 0.91277 1.03679 1.20220 0.97877 0.97253 0.92750 1.21074 0.99979 0.93683 0.98581 1.21105 1.01305 0.95354 0.96090 1.17579 1.02250 0.83677 0.95169 1.42218 1.36703 1.11901 1.33797 1.21913 0.82991 0.87318 0.86060 1.93439 1.67487 1.46431 1.50741 1.47558 1.32901 1.02957 1.42247 1.22504 0.98327 0.86903 0.94263 1.22406 0.91421 0.97293 0.96597 1.62071 1.29863 1.05126 1.28955 1.19379 0.93137 0.87408 0.91877 1.21409 1.45671 0.95073 0.93886 0.90945 1.25949 0.95443 1.01837 0.96590 1.70091 1.49707 1.24939 1.12822 0.85413 0.79096 0.77598 0.78377 1.18867 1.21520 1.19214 1.22433 0.99709 0.91689 0.94575 1.22347 0.86954 0.97530 0.93444 1.21271 0.95677 0.96373 0.97591 1.20975 1.00466 0.93999 0.98744 0.92369 0.93351 0.91209 0.90875 0.89638 0.83042 0.83465 0.73534 0.87031 0.86990 0.96653 0.88471 1.02288 0.97461 0.92750 0.96530 0.89162 0.86336 0.88233 0.86579 0.85405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.89 71.98 0.71 -0.76 16 2 C -0.08 -0.98 6.06 29.85 0.18 -0.80 16 3 C -0.08 -1.34 5.14 -19.84 -0.10 -1.45 16 4 C -0.11 -1.70 9.69 22.25 0.22 -1.48 16 5 C -0.12 -1.95 9.97 22.39 0.22 -1.72 16 6 C 0.11 2.33 5.93 38.16 0.23 2.55 16 7 N -0.62 -12.77 5.17 -189.99 -0.98 -13.75 16 8 C 0.58 15.66 7.48 179.05 1.34 17.00 16 9 S -0.71 -24.97 24.28 -56.49 -1.37 -26.34 16 10 N -0.55 -14.17 3.00 -705.06 -2.12 -16.29 16 11 C 0.10 2.27 6.51 86.50 0.56 2.83 16 12 C 0.05 1.67 5.47 86.54 0.47 2.15 16 13 N -0.54 -20.70 4.62 -898.88 -4.15 -24.86 16 14 C 0.21 10.44 4.72 85.56 0.40 10.84 16 15 C -0.52 -27.40 8.41 25.60 0.22 -27.19 16 16 H 0.07 3.59 7.13 -2.91 -0.02 3.56 16 17 C 0.00 0.00 5.46 84.65 0.46 0.47 16 18 N -0.94 -54.68 13.29 21.45 0.28 -54.39 16 19 Si 0.97 41.85 29.54 68.60 2.03 43.87 16 20 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 21 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 23 C 0.05 1.54 5.62 86.38 0.49 2.02 16 24 C 0.12 3.40 6.51 86.35 0.56 3.96 16 25 C -0.09 -2.22 7.86 22.39 0.18 -2.04 16 26 C -0.12 -2.60 9.69 22.25 0.22 -2.38 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.07 0.85 8.08 -2.39 -0.02 0.83 16 31 H 0.09 0.77 8.08 -2.39 -0.02 0.75 16 32 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 33 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.42 5.85 6.49 -92.71 -0.60 5.24 16 35 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.11 1.62 5.86 -2.39 -0.01 1.61 16 37 H 0.02 0.53 8.14 -2.39 -0.02 0.52 16 38 H 0.10 3.29 6.67 -2.38 -0.02 3.27 16 39 H -0.04 -2.27 8.12 -2.39 -0.02 -2.29 16 40 H 0.01 0.40 7.97 -2.39 -0.02 0.38 16 41 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 42 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.09 3.04 7.99 -2.39 -0.02 3.03 16 44 H 0.12 3.61 5.99 -3.20 -0.02 3.59 16 45 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 46 H 0.12 3.57 6.19 -5.61 -0.03 3.53 16 47 H 0.13 2.46 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -70.15 383.69 0.38 -69.77 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.34 Total: 17.99 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 6.35 Total: 3.99 kcal Atomic # 7 Polarization: -102.32 SS G_CDS: -6.97 Total: -109.28 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.87 kcal Atomic # 16 Polarization: -24.97 SS G_CDS: -1.37 Total: -26.34 kcal Total: -70.15 0.38 -69.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865267939.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.997 kcal (2) G-P(sol) polarization free energy of solvation -70.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds