Wall clock time and date at job start Tue Mar 31 2020 18:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.52997 * 109.47143 * 120.00129 * 2 1 3 5 5 C 1.53002 * 109.47143 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47232 * 59.99957 * 4 2 1 7 7 C 1.50696 * 109.46910 * 60.00144 * 6 4 2 8 8 C 1.38238 * 120.00029 * 269.72262 * 7 6 4 9 9 C 1.38234 * 119.99759 * 179.76633 * 8 7 6 10 10 C 1.38228 * 120.00246 * 0.50886 * 9 8 7 11 11 C 1.38232 * 120.00255 * 359.74639 * 10 9 8 12 12 C 1.38235 * 119.99637 * 0.02562 * 11 10 9 13 13 C 1.50706 * 109.47238 * 299.99842 * 4 2 1 14 14 O 1.20825 * 119.99819 * 119.99948 * 13 4 2 15 15 O 1.34226 * 119.99822 * 300.00684 * 13 4 2 16 16 C 1.45208 * 116.99939 * 179.97438 * 15 13 4 17 17 C 1.50692 * 109.47278 * 179.97438 * 16 15 13 18 18 O 1.21295 * 119.99878 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00277 * 179.97438 * 17 16 15 20 20 C 1.37095 * 120.00246 * 180.02562 * 19 17 16 21 21 H 1.07990 * 120.00117 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99842 * 180.02562 * 20 19 17 23 23 N 1.31419 * 120.00028 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99971 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47318 * 90.00047 * 24 22 20 26 26 H 1.48501 * 109.47243 * 209.99803 * 24 22 20 27 27 H 1.48500 * 109.47340 * 329.99884 * 24 22 20 28 28 H 1.09002 * 109.47067 * 299.99853 * 1 2 3 29 29 H 1.09000 * 109.47312 * 59.99880 * 1 2 3 30 30 H 1.09004 * 109.46930 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47067 * 240.00147 * 2 1 3 32 32 H 1.09000 * 109.47140 * 300.00226 * 3 2 1 33 33 H 1.09002 * 109.47045 * 60.00133 * 3 2 1 34 34 H 1.08998 * 109.47624 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.47059 * 179.97438 * 5 4 2 36 36 H 1.08992 * 109.47060 * 300.00021 * 5 4 2 37 37 H 1.09004 * 109.46930 * 59.99935 * 5 4 2 38 38 H 1.09000 * 109.47140 * 179.97438 * 6 4 2 39 39 H 1.08992 * 109.47280 * 299.99702 * 6 4 2 40 40 H 1.07997 * 119.99714 * 0.02562 * 8 7 6 41 41 H 1.08001 * 119.99665 * 180.23458 * 9 8 7 42 42 H 1.08002 * 120.00128 * 179.72028 * 10 9 8 43 43 H 1.07997 * 120.00677 * 179.97438 * 11 10 9 44 44 H 1.08005 * 119.99733 * 179.97438 * 12 11 10 45 45 H 1.09002 * 109.46675 * 299.99728 * 16 15 13 46 46 H 1.09004 * 109.46680 * 59.99179 * 16 15 13 47 47 H 0.97007 * 119.99507 * 359.97438 * 19 17 16 48 48 H 0.97005 * 119.99610 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2495 6 6 1.5300 -2.1637 1.2492 7 6 2.0324 -2.8741 0.0188 8 6 1.2826 -2.8591 -1.1425 9 6 1.7458 -3.5067 -2.2726 10 6 2.9536 -4.1780 -2.2384 11 6 3.7009 -4.1974 -1.0756 12 6 3.2400 -3.5459 0.0531 13 6 1.5377 -0.0109 2.4797 14 8 0.8431 -0.5981 3.2751 15 8 1.8619 1.2742 2.6921 16 6 1.3423 1.8947 3.8978 17 6 1.8072 3.3264 3.9664 18 8 2.5072 3.7796 3.0855 19 7 1.4444 4.1037 5.0059 20 6 1.8670 5.4064 5.0681 21 1 2.4909 5.8097 4.2843 22 6 1.4933 6.2076 6.1401 23 7 0.7345 5.7167 7.0942 24 14 2.0696 7.9824 6.2252 25 1 1.0797 8.8574 5.5471 26 1 2.2012 8.3926 7.6463 27 1 3.3861 8.1084 5.5498 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4426 0.0005 35 1 3.9334 -1.2342 2.1398 36 1 3.9337 -1.2342 0.3596 37 1 3.9330 0.3071 1.2498 38 1 1.8938 -2.6777 2.1389 39 1 0.4401 -2.1638 1.2493 40 1 0.3370 -2.3380 -1.1680 41 1 1.1618 -3.4918 -3.1810 42 1 3.3133 -4.6877 -3.1200 43 1 4.6444 -4.7223 -1.0487 44 1 3.8237 -3.5615 0.9617 45 1 0.2528 1.8665 3.8802 46 1 1.7058 1.3526 4.7708 47 1 0.8837 3.7415 5.7098 48 1 0.4740 6.2759 7.8427 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869719588.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:04 Heat of formation + Delta-G solvation = -112.130929 kcal Electronic energy + Delta-G solvation = -29268.348122 eV Core-core repulsion = 25287.883848 eV Total energy + Delta-G solvation = -3980.464274 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.14309 -39.58168 -38.21435 -37.08097 -36.07579 -33.98825 -32.82284 -31.39667 -31.31608 -30.54878 -28.38417 -27.89110 -26.04520 -24.88886 -23.87404 -22.78454 -21.85396 -21.49559 -19.57277 -19.14181 -18.06518 -17.05910 -16.84310 -16.53151 -16.18277 -15.57871 -15.52988 -15.28868 -14.81102 -14.60135 -14.29185 -14.18007 -13.83837 -13.55467 -13.50544 -13.28554 -12.99661 -12.78593 -12.50341 -12.28963 -12.20509 -12.09237 -11.95706 -11.80423 -11.64154 -11.61468 -11.21730 -11.13962 -11.11571 -10.79622 -10.61335 -10.49306 -10.44243 -10.30751 -10.22653 -10.05193 -9.59532 -9.10942 -8.87839 -8.49998 -8.07455 -6.49497 -3.91392 1.11153 1.17916 2.36978 2.73714 3.13350 3.23438 3.29519 3.56747 3.75050 4.10768 4.41681 4.51328 4.54342 4.70182 4.73949 4.78618 4.89383 4.91373 5.09485 5.14626 5.15790 5.22725 5.28616 5.36597 5.44326 5.53238 5.57935 5.63423 5.70836 5.73566 5.75536 5.80148 5.83141 5.85752 5.97335 6.03125 6.06917 6.10576 6.17658 6.25050 6.29691 6.37357 6.44457 6.64820 6.78173 6.83214 7.48161 7.88443 7.99192 8.49354 9.07729 9.40370 9.90243 10.67764 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.029799 B = 0.002323 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.408358 B =12051.307988 C =12174.052412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.084 4.084 3 C -0.163 4.163 4 C -0.037 4.037 5 C -0.149 4.149 6 C -0.066 4.066 7 C -0.072 4.072 8 C -0.115 4.115 9 C -0.120 4.120 10 C -0.126 4.126 11 C -0.120 4.120 12 C -0.113 4.113 13 C 0.469 3.531 14 O -0.515 6.515 15 O -0.314 6.314 16 C 0.054 3.946 17 C 0.440 3.560 18 O -0.574 6.574 19 N -0.554 5.554 20 C -0.301 4.301 21 H 0.106 0.894 22 C 0.024 3.976 23 N -0.898 5.898 24 Si 0.933 3.067 25 H -0.277 1.277 26 H -0.283 1.283 27 H -0.268 1.268 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.125 0.875 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.394 0.606 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.501 -19.145 -15.187 24.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.103 4.103 3 C -0.220 4.220 4 C -0.039 4.039 5 C -0.206 4.206 6 C -0.103 4.103 7 C -0.072 4.072 8 C -0.133 4.133 9 C -0.138 4.138 10 C -0.144 4.144 11 C -0.138 4.138 12 C -0.131 4.131 13 C 0.312 3.688 14 O -0.404 6.404 15 O -0.228 6.228 16 C -0.024 4.024 17 C 0.224 3.776 18 O -0.458 6.458 19 N -0.191 5.191 20 C -0.430 4.430 21 H 0.124 0.876 22 C -0.178 4.178 23 N -0.538 5.538 24 Si 0.760 3.240 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.193 1.193 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.142 0.858 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.103 0.897 46 H 0.103 0.897 47 H 0.228 0.772 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.697 -18.876 -15.334 24.379 hybrid contribution -0.269 0.576 0.795 1.017 sum 1.428 -18.301 -14.539 23.417 Atomic orbital electron populations 1.22046 0.95136 1.01762 1.02455 1.21214 0.95863 0.97391 0.95788 1.22191 1.01751 0.94441 1.03624 1.20538 0.98033 0.94029 0.91257 1.22039 0.91624 1.04220 1.02754 1.20578 1.01922 0.92035 0.95804 1.19756 0.94843 0.97537 0.95060 1.21195 1.00127 0.99403 0.92604 1.21139 0.96462 0.97918 0.98282 1.21134 0.95277 0.99882 0.98065 1.21135 0.99846 0.99638 0.93202 1.21113 0.95784 0.97568 0.98667 1.23602 0.77378 0.80797 0.87008 1.90636 1.36024 1.67115 1.46595 1.86668 1.68839 1.25097 1.42195 1.22775 0.99519 0.94176 0.85921 1.19312 0.86743 0.86187 0.85318 1.90560 1.41249 1.74420 1.39561 1.41713 1.45736 1.11249 1.20434 1.19711 1.29728 0.85816 1.07769 0.87633 1.25312 0.96624 1.00660 0.95229 1.69620 1.35616 1.37662 1.10920 0.85806 0.79319 0.81464 0.77408 1.20278 1.20833 1.19292 0.92691 0.91925 0.92235 0.89540 0.92924 0.89283 0.92118 0.92194 0.90755 0.90201 0.90002 0.89635 0.85754 0.86199 0.86360 0.86195 0.85979 0.89749 0.89737 0.77212 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 8.22 37.16 0.31 -1.41 16 2 C -0.08 -0.96 1.75 -90.62 -0.16 -1.11 16 3 C -0.16 -2.21 8.32 37.16 0.31 -1.90 16 4 C -0.04 -0.45 0.32 -155.66 -0.05 -0.50 16 5 C -0.15 -1.67 7.46 37.16 0.28 -1.39 16 6 C -0.07 -0.70 3.41 -27.89 -0.09 -0.80 16 7 C -0.07 -0.67 4.00 -104.62 -0.42 -1.09 16 8 C -0.12 -1.01 7.83 -39.58 -0.31 -1.32 16 9 C -0.12 -0.95 10.05 -39.59 -0.40 -1.35 16 10 C -0.13 -0.96 10.05 -39.59 -0.40 -1.36 16 11 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 12 C -0.11 -0.99 7.89 -39.58 -0.31 -1.30 16 13 C 0.47 7.36 5.22 36.01 0.19 7.54 16 14 O -0.51 -8.92 15.73 -18.75 -0.29 -9.21 16 15 O -0.31 -5.66 6.57 -45.89 -0.30 -5.96 16 16 C 0.05 1.02 5.94 36.00 0.21 1.23 16 17 C 0.44 10.46 7.86 -10.99 -0.09 10.37 16 18 O -0.57 -15.54 16.08 -14.12 -0.23 -15.76 16 19 N -0.55 -13.95 5.29 -10.97 -0.06 -14.01 16 20 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 21 H 0.11 3.02 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.64 5.50 -17.46 -0.10 0.54 16 23 N -0.90 -24.09 13.05 55.50 0.72 -23.37 16 24 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 28 H 0.05 0.71 7.22 -51.93 -0.37 0.34 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.56 4.68 -51.93 -0.24 0.32 16 31 H 0.09 0.88 6.19 -51.93 -0.32 0.56 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 1.50 5.32 -51.93 -0.28 1.22 16 34 H 0.06 0.81 6.43 -51.93 -0.33 0.48 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.72 6.18 -51.93 -0.32 0.40 16 37 H 0.08 1.00 6.40 -51.93 -0.33 0.67 16 38 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 39 H 0.09 0.93 6.33 -51.93 -0.33 0.60 16 40 H 0.12 0.98 5.96 -52.49 -0.31 0.67 16 41 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 43 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 44 H 0.12 0.94 8.03 -52.48 -0.42 0.52 16 45 H 0.08 1.48 8.13 -51.93 -0.42 1.06 16 46 H 0.08 1.49 8.13 -51.93 -0.42 1.06 16 47 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 48 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 380.14 15.07 5.73 5.73 Total: -1.00 -31.28 380.14 -7.92 -39.20 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -6.90 Total: 11.31 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -1.57 Total: -3.60 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.67 Total: -37.38 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -0.82 Total: -30.94 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.28 -7.92 -39.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869719588.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.933 kcal (2) G-P(sol) polarization free energy of solvation -31.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds