Wall clock time and date at job start Tue Mar 31 2020 18:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.52997 * 109.47143 * 120.00129 * 2 1 3 5 5 C 1.53002 * 109.47143 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47232 * 59.99957 * 4 2 1 7 7 C 1.50696 * 109.46910 * 60.00144 * 6 4 2 8 8 C 1.38238 * 120.00029 * 269.72262 * 7 6 4 9 9 C 1.38234 * 119.99759 * 179.76633 * 8 7 6 10 10 C 1.38228 * 120.00246 * 0.50886 * 9 8 7 11 11 C 1.38232 * 120.00255 * 359.74639 * 10 9 8 12 12 C 1.38235 * 119.99637 * 0.02562 * 11 10 9 13 13 C 1.50706 * 109.47238 * 299.99842 * 4 2 1 14 14 O 1.20825 * 119.99819 * 119.99948 * 13 4 2 15 15 O 1.34226 * 119.99822 * 300.00684 * 13 4 2 16 16 C 1.45208 * 116.99939 * 179.97438 * 15 13 4 17 17 C 1.50692 * 109.47278 * 179.97438 * 16 15 13 18 18 O 1.21295 * 119.99878 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00277 * 179.97438 * 17 16 15 20 20 C 1.37095 * 120.00246 * 180.02562 * 19 17 16 21 21 H 1.07990 * 120.00117 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99842 * 180.02562 * 20 19 17 23 23 N 1.31419 * 120.00028 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99971 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47318 * 90.00047 * 24 22 20 26 26 H 1.48501 * 109.47243 * 209.99803 * 24 22 20 27 27 H 1.48500 * 109.47340 * 329.99884 * 24 22 20 28 28 H 1.09002 * 109.47067 * 299.99853 * 1 2 3 29 29 H 1.09000 * 109.47312 * 59.99880 * 1 2 3 30 30 H 1.09004 * 109.46930 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47067 * 240.00147 * 2 1 3 32 32 H 1.09000 * 109.47140 * 300.00226 * 3 2 1 33 33 H 1.09002 * 109.47045 * 60.00133 * 3 2 1 34 34 H 1.08998 * 109.47624 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.47059 * 179.97438 * 5 4 2 36 36 H 1.08992 * 109.47060 * 300.00021 * 5 4 2 37 37 H 1.09004 * 109.46930 * 59.99935 * 5 4 2 38 38 H 1.09000 * 109.47140 * 179.97438 * 6 4 2 39 39 H 1.08992 * 109.47280 * 299.99702 * 6 4 2 40 40 H 1.07997 * 119.99714 * 0.02562 * 8 7 6 41 41 H 1.08001 * 119.99665 * 180.23458 * 9 8 7 42 42 H 1.08002 * 120.00128 * 179.72028 * 10 9 8 43 43 H 1.07997 * 120.00677 * 179.97438 * 11 10 9 44 44 H 1.08005 * 119.99733 * 179.97438 * 12 11 10 45 45 H 1.09002 * 109.46675 * 299.99728 * 16 15 13 46 46 H 1.09004 * 109.46680 * 59.99179 * 16 15 13 47 47 H 0.97007 * 119.99507 * 359.97438 * 19 17 16 48 48 H 0.97005 * 119.99610 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2495 6 6 1.5300 -2.1637 1.2492 7 6 2.0324 -2.8741 0.0188 8 6 1.2826 -2.8591 -1.1425 9 6 1.7458 -3.5067 -2.2726 10 6 2.9536 -4.1780 -2.2384 11 6 3.7009 -4.1974 -1.0756 12 6 3.2400 -3.5459 0.0531 13 6 1.5377 -0.0109 2.4797 14 8 0.8431 -0.5981 3.2751 15 8 1.8619 1.2742 2.6921 16 6 1.3423 1.8947 3.8978 17 6 1.8072 3.3264 3.9664 18 8 2.5072 3.7796 3.0855 19 7 1.4444 4.1037 5.0059 20 6 1.8670 5.4064 5.0681 21 1 2.4909 5.8097 4.2843 22 6 1.4933 6.2076 6.1401 23 7 0.7345 5.7167 7.0942 24 14 2.0696 7.9824 6.2252 25 1 1.0797 8.8574 5.5471 26 1 2.2012 8.3926 7.6463 27 1 3.3861 8.1084 5.5498 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4426 0.0005 35 1 3.9334 -1.2342 2.1398 36 1 3.9337 -1.2342 0.3596 37 1 3.9330 0.3071 1.2498 38 1 1.8938 -2.6777 2.1389 39 1 0.4401 -2.1638 1.2493 40 1 0.3370 -2.3380 -1.1680 41 1 1.1618 -3.4918 -3.1810 42 1 3.3133 -4.6877 -3.1200 43 1 4.6444 -4.7223 -1.0487 44 1 3.8237 -3.5615 0.9617 45 1 0.2528 1.8665 3.8802 46 1 1.7058 1.3526 4.7708 47 1 0.8837 3.7415 5.7098 48 1 0.4740 6.2759 7.8427 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869719588.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:03 Heat of formation + Delta-G solvation = -127.902601 kcal Electronic energy + Delta-G solvation = -29269.032033 eV Core-core repulsion = 25287.883848 eV Total energy + Delta-G solvation = -3981.148185 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.30218 -40.54795 -39.93610 -38.12346 -37.46875 -36.02186 -33.64279 -33.40863 -32.02434 -31.33605 -30.00591 -28.79357 -26.94031 -26.73508 -25.03454 -23.44594 -22.89185 -22.24789 -21.42462 -20.29503 -20.06990 -18.40512 -17.88116 -17.81630 -17.38638 -16.99696 -16.48139 -16.41591 -16.07405 -15.84542 -15.79032 -15.37582 -15.11925 -14.85058 -14.56855 -14.18767 -13.92743 -13.85954 -13.71958 -13.56828 -13.48827 -13.25371 -13.13356 -12.96338 -12.90229 -12.71729 -12.65254 -12.47825 -12.13001 -12.01231 -11.85524 -11.79615 -11.62816 -11.59018 -11.53401 -11.39306 -11.21914 -10.48957 -10.11679 -9.70637 -9.52003 -8.52603 -6.03017 0.47970 0.58585 1.10503 1.35378 1.37341 1.45428 1.57205 1.87255 2.29022 2.92666 3.02180 3.12788 3.49534 3.58159 3.66968 3.90573 3.97168 4.03254 4.12784 4.14724 4.19820 4.21345 4.24898 4.38026 4.40823 4.53724 4.55694 4.71394 4.73559 4.79607 4.84499 4.88688 4.95617 4.99538 5.01769 5.14878 5.19136 5.20958 5.27350 5.33161 5.36808 5.42765 5.66478 5.66610 5.72222 5.79135 5.88832 6.19764 6.45684 6.65204 7.02756 7.39991 7.93289 8.64523 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.029799 B = 0.002323 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.408358 B =12051.307988 C =12174.052412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.075 4.075 3 C -0.162 4.162 4 C -0.033 4.033 5 C -0.146 4.146 6 C -0.058 4.058 7 C -0.083 4.083 8 C -0.124 4.124 9 C -0.125 4.125 10 C -0.129 4.129 11 C -0.126 4.126 12 C -0.123 4.123 13 C 0.468 3.532 14 O -0.532 6.532 15 O -0.325 6.325 16 C 0.063 3.937 17 C 0.440 3.560 18 O -0.611 6.611 19 N -0.560 5.560 20 C -0.335 4.335 21 H 0.085 0.915 22 C -0.011 4.011 23 N -0.917 5.917 24 Si 0.998 3.002 25 H -0.269 1.269 26 H -0.270 1.270 27 H -0.270 1.270 28 H 0.029 0.971 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.130 0.870 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.127 0.873 45 H 0.100 0.900 46 H 0.101 0.899 47 H 0.399 0.601 48 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.657 -20.312 -16.455 26.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.094 4.094 3 C -0.219 4.219 4 C -0.034 4.034 5 C -0.203 4.203 6 C -0.095 4.095 7 C -0.083 4.083 8 C -0.141 4.141 9 C -0.143 4.143 10 C -0.146 4.146 11 C -0.144 4.144 12 C -0.140 4.140 13 C 0.312 3.688 14 O -0.422 6.422 15 O -0.240 6.240 16 C -0.014 4.014 17 C 0.226 3.774 18 O -0.497 6.497 19 N -0.198 5.198 20 C -0.464 4.464 21 H 0.103 0.897 22 C -0.211 4.211 23 N -0.557 5.557 24 Si 0.821 3.179 25 H -0.195 1.195 26 H -0.195 1.195 27 H -0.195 1.195 28 H 0.048 0.952 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.125 0.875 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.148 0.852 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.155 0.845 44 H 0.145 0.855 45 H 0.118 0.882 46 H 0.119 0.881 47 H 0.233 0.767 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.834 -20.068 -16.590 26.103 hybrid contribution -0.317 0.858 1.142 1.463 sum 1.518 -19.210 -15.448 24.698 Atomic orbital electron populations 1.22055 0.94710 1.02669 1.01877 1.21182 0.96162 0.95926 0.96091 1.22146 1.01623 0.95761 1.02336 1.20684 0.98570 0.94573 0.89569 1.22027 0.90868 1.03449 1.03935 1.20484 1.01601 0.90853 0.96601 1.19651 0.95549 0.98435 0.94662 1.21328 1.00378 0.99760 0.92675 1.21407 0.96780 0.97455 0.98677 1.21456 0.95060 0.99430 0.98695 1.21398 1.00601 0.99411 0.92981 1.21257 0.95710 0.97718 0.99361 1.24403 0.76791 0.79768 0.87814 1.90619 1.36905 1.67155 1.47508 1.86723 1.69201 1.26532 1.41575 1.22527 1.00283 0.91295 0.87325 1.20030 0.85470 0.87786 0.84083 1.90527 1.42724 1.75738 1.40708 1.41755 1.46004 1.11019 1.21019 1.19705 1.31139 0.87283 1.08308 0.89727 1.26135 0.96195 1.04434 0.94350 1.69682 1.35688 1.39137 1.11165 0.84858 0.78714 0.76438 0.77921 1.19453 1.19468 1.19507 0.95207 0.90555 0.90605 0.87500 0.91913 0.92728 0.92324 0.91790 0.88833 0.91871 0.90498 0.90040 0.85171 0.84412 0.84401 0.84503 0.85470 0.88166 0.88090 0.76725 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 8.22 71.98 0.59 -2.66 16 2 C -0.08 -1.64 1.75 -10.79 -0.02 -1.66 16 3 C -0.16 -4.39 8.32 71.98 0.60 -3.79 16 4 C -0.03 -0.77 0.32 -52.93 -0.02 -0.79 16 5 C -0.15 -3.15 7.46 71.98 0.54 -2.62 16 6 C -0.06 -1.18 3.41 29.85 0.10 -1.07 16 7 C -0.08 -1.40 4.00 -19.87 -0.08 -1.48 16 8 C -0.12 -1.87 7.83 22.27 0.17 -1.69 16 9 C -0.13 -1.63 10.05 22.27 0.22 -1.41 16 10 C -0.13 -1.59 10.05 22.27 0.22 -1.37 16 11 C -0.13 -1.67 10.05 22.27 0.22 -1.44 16 12 C -0.12 -1.89 7.89 22.27 0.18 -1.71 16 13 C 0.47 14.74 5.22 71.24 0.37 15.11 16 14 O -0.53 -18.41 15.73 21.97 0.35 -18.06 16 15 O -0.33 -12.02 6.57 -45.02 -0.30 -12.32 16 16 C 0.06 2.43 5.94 71.23 0.42 2.86 16 17 C 0.44 21.57 7.86 87.65 0.69 22.26 16 18 O -0.61 -34.34 16.08 15.72 0.25 -34.09 16 19 N -0.56 -29.00 5.29 -307.00 -1.62 -30.62 16 20 C -0.34 -18.89 9.68 84.04 0.81 -18.08 16 21 H 0.08 5.04 7.16 -2.92 -0.02 5.02 16 22 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 23 N -0.92 -49.06 13.05 21.66 0.28 -48.78 16 24 Si 1.00 42.27 29.55 68.60 2.03 44.29 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 26 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 27 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 28 H 0.03 0.76 7.22 -2.39 -0.02 0.75 16 29 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.08 1.32 4.68 -2.38 -0.01 1.31 16 31 H 0.11 1.95 6.19 -2.39 -0.01 1.93 16 32 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.05 1.90 5.32 -2.39 -0.01 1.89 16 34 H 0.06 1.58 6.43 -2.39 -0.02 1.56 16 35 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.09 1.66 6.18 -2.39 -0.01 1.64 16 37 H 0.06 1.59 6.40 -2.38 -0.02 1.57 16 38 H 0.08 1.62 8.04 -2.39 -0.02 1.60 16 39 H 0.08 1.70 6.33 -2.39 -0.02 1.68 16 40 H 0.13 1.74 5.96 -2.91 -0.02 1.72 16 41 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 42 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 43 H 0.14 1.28 8.06 -2.91 -0.02 1.25 16 44 H 0.13 1.75 8.03 -2.91 -0.02 1.73 16 45 H 0.10 3.54 8.13 -2.39 -0.02 3.52 16 46 H 0.10 3.56 8.13 -2.38 -0.02 3.54 16 47 H 0.40 19.57 7.90 -92.70 -0.73 18.84 16 48 H 0.28 13.99 8.31 -92.70 -0.77 13.22 16 Total: -1.00 -67.93 380.14 6.74 -61.19 By element: Atomic # 1 Polarization: 37.77 SS G_CDS: 0.25 Total: 38.02 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: 5.50 Total: 0.36 kcal Atomic # 7 Polarization: -78.05 SS G_CDS: -1.34 Total: -79.39 kcal Atomic # 8 Polarization: -64.77 SS G_CDS: 0.30 Total: -64.46 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Total: -67.93 6.74 -61.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869719588.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.714 kcal (2) G-P(sol) polarization free energy of solvation -67.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds