Wall clock time and date at job start Tue Mar 31 2020 18:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46968 * 2 1 4 4 C 1.53004 * 109.46991 * 119.99463 * 2 1 3 5 5 C 1.53000 * 109.47127 * 179.13364 * 4 2 1 6 6 C 1.53002 * 109.47044 * 299.12977 * 4 2 1 7 7 C 1.50696 * 109.47242 * 185.78059 * 6 4 2 8 8 C 1.38239 * 119.99934 * 83.36047 * 7 6 4 9 9 C 1.38231 * 120.00149 * 179.97438 * 8 7 6 10 10 C 1.38237 * 119.99835 * 359.97438 * 9 8 7 11 11 C 1.38232 * 119.99899 * 0.27642 * 10 9 8 12 12 C 1.38232 * 120.00171 * 359.53538 * 11 10 9 13 13 C 1.50701 * 109.47098 * 59.12846 * 4 2 1 14 14 O 1.20819 * 120.00050 * 247.25769 * 13 4 2 15 15 O 1.34225 * 119.99382 * 67.26595 * 13 4 2 16 16 C 1.45207 * 116.99736 * 179.97438 * 15 13 4 17 17 C 1.50700 * 109.46980 * 179.97438 * 16 15 13 18 18 O 1.21283 * 120.00370 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99773 * 179.97438 * 17 16 15 20 20 C 1.37095 * 120.00126 * 180.02562 * 19 17 16 21 21 H 1.07996 * 119.99972 * 0.02562 * 20 19 17 22 22 C 1.38954 * 120.00058 * 180.02562 * 20 19 17 23 23 N 1.31410 * 120.00006 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99748 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47351 * 59.99983 * 24 22 20 26 26 H 1.48502 * 109.47046 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47266 * 299.99942 * 24 22 20 28 28 H 1.08993 * 109.47742 * 300.00259 * 1 2 3 29 29 H 1.09003 * 109.47328 * 60.01083 * 1 2 3 30 30 H 1.09003 * 109.46662 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47529 * 239.99258 * 2 1 3 32 32 H 1.08995 * 109.47013 * 174.60420 * 3 2 1 33 33 H 1.09007 * 109.46433 * 294.60145 * 3 2 1 34 34 H 1.08995 * 109.46926 * 54.59886 * 3 2 1 35 35 H 1.08998 * 109.47047 * 180.02562 * 5 4 2 36 36 H 1.08997 * 109.46681 * 299.99841 * 5 4 2 37 37 H 1.09001 * 109.47199 * 59.99949 * 5 4 2 38 38 H 1.09005 * 109.46741 * 65.78422 * 6 4 2 39 39 H 1.08996 * 109.47737 * 305.78463 * 6 4 2 40 40 H 1.08002 * 119.99793 * 0.02562 * 8 7 6 41 41 H 1.07997 * 120.00096 * 180.02562 * 9 8 7 42 42 H 1.08007 * 119.99930 * 180.02562 * 10 9 8 43 43 H 1.08008 * 119.99293 * 179.72173 * 11 10 9 44 44 H 1.07999 * 119.99782 * 180.23397 * 12 11 10 45 45 H 1.08993 * 109.47233 * 300.00152 * 16 15 13 46 46 H 1.09006 * 109.46709 * 59.99846 * 16 15 13 47 47 H 0.97000 * 119.99784 * 0.02562 * 19 17 16 48 48 H 0.96992 * 119.99840 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5698 -0.7401 1.2385 6 6 1.5479 0.0128 2.4984 7 6 2.1646 -0.6115 3.7235 8 6 3.4332 -0.2373 4.1258 9 6 3.9987 -0.8095 5.2498 10 6 3.2955 -1.7555 5.9720 11 6 2.0291 -2.1335 5.5668 12 6 1.4620 -1.5584 4.4450 13 6 1.5200 -2.1356 1.2603 14 8 0.7231 -2.4798 2.1006 15 8 1.9426 -3.0130 0.3366 16 6 1.4000 -4.3580 0.4081 17 6 1.9843 -5.1949 -0.7006 18 8 2.7800 -4.7062 -1.4745 19 7 1.6234 -6.4869 -0.8314 20 6 2.1552 -7.2485 -1.8397 21 1 2.8637 -6.8133 -2.5288 22 6 1.7827 -8.5803 -1.9749 23 7 0.9202 -9.1097 -1.1366 24 14 2.5080 -9.6181 -3.3483 25 1 3.9847 -9.6718 -3.2011 26 1 1.9534 -10.9938 -3.2749 27 1 2.1629 -9.0141 -4.6602 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1256 1.4441 0.0966 33 1 1.7576 1.9276 -0.9345 34 1 1.5998 1.9835 0.8376 35 1 3.9331 -1.2542 2.1283 36 1 3.9203 -1.2629 0.3487 37 1 3.9458 0.2830 1.2306 38 1 0.4622 -0.0623 2.5598 39 1 1.8368 1.0622 2.4408 40 1 3.9820 0.5027 3.5622 41 1 4.9896 -0.5169 5.5643 42 1 3.7373 -2.2023 6.8505 43 1 1.4816 -2.8759 6.1286 44 1 0.4711 -1.8510 4.1306 45 1 1.6537 -4.8014 1.3709 46 1 0.3160 -4.3186 0.3006 47 1 0.9873 -6.8778 -0.2122 48 1 0.6605 -10.0395 -1.2308 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869719589.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:08 Heat of formation + Delta-G solvation = -112.023737 kcal Electronic energy + Delta-G solvation = -29453.166625 eV Core-core repulsion = 25472.706999 eV Total energy + Delta-G solvation = -3980.459626 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.08018 -39.24900 -38.20643 -37.34042 -35.94690 -33.98108 -32.84638 -31.36905 -30.97930 -30.34251 -28.41769 -27.70377 -26.68087 -24.83626 -23.95741 -22.49187 -21.71327 -21.32408 -19.54588 -18.98042 -18.05074 -17.27571 -16.84165 -16.35044 -16.14461 -15.60826 -15.47980 -14.94439 -14.76576 -14.57867 -14.42231 -14.02358 -13.89857 -13.42807 -13.37682 -13.25733 -12.97608 -12.86747 -12.53875 -12.42670 -12.15125 -12.05807 -11.91202 -11.75032 -11.60837 -11.46658 -11.23810 -11.21918 -11.10259 -10.88140 -10.67852 -10.52985 -10.48350 -10.31745 -10.29057 -9.96809 -9.58106 -8.85697 -8.66584 -8.49022 -8.06724 -6.48624 -3.90602 1.32380 1.43489 2.42987 2.79457 3.16189 3.23192 3.28126 3.75765 3.76291 4.11983 4.40837 4.49037 4.57559 4.83559 4.86920 4.92184 4.99021 5.04180 5.06726 5.16438 5.17751 5.20977 5.39225 5.40441 5.49357 5.50438 5.55222 5.62099 5.70500 5.71684 5.73073 5.75689 5.76044 5.86932 5.94594 6.03498 6.08561 6.09787 6.11313 6.21406 6.28152 6.45006 6.53545 6.67646 6.77257 7.03081 7.48696 7.91468 8.03653 8.50546 9.08468 9.41129 9.91385 10.68652 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013702 B = 0.002963 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.025853 B = 9448.956183 C =10566.696583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.087 4.087 3 C -0.149 4.149 4 C -0.036 4.036 5 C -0.152 4.152 6 C -0.065 4.065 7 C -0.089 4.089 8 C -0.114 4.114 9 C -0.130 4.130 10 C -0.123 4.123 11 C -0.127 4.127 12 C -0.090 4.090 13 C 0.468 3.532 14 O -0.509 6.509 15 O -0.323 6.323 16 C 0.060 3.940 17 C 0.439 3.561 18 O -0.575 6.575 19 N -0.553 5.553 20 C -0.303 4.303 21 H 0.105 0.895 22 C 0.025 3.975 23 N -0.898 5.898 24 Si 0.934 3.066 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.272 1.272 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.135 0.865 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.394 0.606 48 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.691 19.790 10.917 22.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.105 4.105 3 C -0.206 4.206 4 C -0.037 4.037 5 C -0.209 4.209 6 C -0.102 4.102 7 C -0.089 4.089 8 C -0.132 4.132 9 C -0.148 4.148 10 C -0.141 4.141 11 C -0.145 4.145 12 C -0.108 4.108 13 C 0.311 3.689 14 O -0.397 6.397 15 O -0.237 6.237 16 C -0.017 4.017 17 C 0.224 3.776 18 O -0.459 6.459 19 N -0.191 5.191 20 C -0.432 4.432 21 H 0.123 0.877 22 C -0.177 4.177 23 N -0.538 5.538 24 Si 0.761 3.239 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.198 1.198 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.152 0.848 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.228 0.772 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.909 19.772 10.632 22.468 hybrid contribution -0.212 -1.186 -0.087 1.208 sum 0.697 18.586 10.545 21.380 Atomic orbital electron populations 1.21960 0.94742 1.02238 1.02193 1.21181 0.96210 0.96628 0.96502 1.21963 1.01573 0.94976 1.02094 1.20501 0.97984 0.88138 0.97088 1.22117 0.91769 1.02977 1.04020 1.20683 1.01358 0.98666 0.89494 1.19804 0.94673 0.97866 0.96568 1.21062 0.95015 1.00402 0.96746 1.21067 0.99820 0.97931 0.95994 1.21137 0.95121 0.97949 0.99935 1.21201 0.95812 1.00141 0.97385 1.21364 1.00962 0.94786 0.93647 1.23575 0.78805 0.88193 0.78312 1.90572 1.32747 1.79483 1.36927 1.86549 1.64492 1.21307 1.51336 1.22705 0.98754 0.79956 1.00301 1.19338 0.87104 0.83397 0.87763 1.90552 1.37397 1.72003 1.45978 1.41700 1.40380 1.07825 1.29181 1.19674 1.23913 0.91914 1.07684 0.87698 1.25301 0.96622 0.97185 0.98615 1.69605 1.32241 1.15077 1.36925 0.85867 0.79221 0.78252 0.80603 1.19760 1.20871 1.19755 0.92106 0.91997 0.92720 0.89223 0.91839 0.92159 0.92269 0.91434 0.90592 0.91018 0.89698 0.89411 0.86199 0.86403 0.86520 0.86352 0.84771 0.89820 0.89803 0.77210 0.91601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.60 37.16 0.32 -1.29 16 2 C -0.09 -0.92 2.27 -90.62 -0.21 -1.12 16 3 C -0.15 -1.16 8.47 37.16 0.31 -0.84 16 4 C -0.04 -0.43 0.31 -155.66 -0.05 -0.47 16 5 C -0.15 -1.72 6.89 37.16 0.26 -1.46 16 6 C -0.07 -0.67 3.49 -27.88 -0.10 -0.77 16 7 C -0.09 -1.04 4.23 -104.63 -0.44 -1.48 16 8 C -0.11 -1.19 7.49 -39.58 -0.30 -1.49 16 9 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 10 C -0.12 -1.34 10.05 -39.58 -0.40 -1.73 16 11 C -0.13 -1.51 10.05 -39.59 -0.40 -1.91 16 12 C -0.09 -1.15 8.13 -39.59 -0.32 -1.47 16 13 C 0.47 7.39 4.95 36.01 0.18 7.57 16 14 O -0.51 -8.42 12.28 -18.74 -0.23 -8.65 16 15 O -0.32 -6.10 9.43 -45.89 -0.43 -6.53 16 16 C 0.06 1.18 5.94 36.01 0.21 1.40 16 17 C 0.44 10.74 7.86 -10.98 -0.09 10.65 16 18 O -0.58 -16.09 16.08 -14.10 -0.23 -16.32 16 19 N -0.55 -14.17 5.29 -10.96 -0.06 -14.23 16 20 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 21 H 0.11 3.04 7.16 -52.49 -0.38 2.66 16 22 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 23 N -0.90 -24.25 13.05 55.50 0.72 -23.53 16 24 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 28 H 0.06 0.56 6.58 -51.93 -0.34 0.22 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.69 7.19 -51.93 -0.37 0.31 16 31 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.06 0.46 6.18 -51.93 -0.32 0.14 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.39 6.59 -51.93 -0.34 0.05 16 35 H 0.07 0.82 5.83 -51.93 -0.30 0.52 16 36 H 0.08 0.99 7.99 -51.93 -0.41 0.57 16 37 H 0.07 0.61 6.23 -51.93 -0.32 0.28 16 38 H 0.08 0.91 6.34 -51.93 -0.33 0.58 16 39 H 0.09 0.70 6.22 -51.93 -0.32 0.38 16 40 H 0.12 1.00 7.54 -52.49 -0.40 0.61 16 41 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 42 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 43 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 44 H 0.13 1.82 6.54 -52.49 -0.34 1.47 16 45 H 0.08 1.53 8.13 -51.93 -0.42 1.11 16 46 H 0.08 1.50 8.13 -51.93 -0.42 1.07 16 47 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 48 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 382.42 15.07 5.76 5.76 Total: -1.00 -31.99 382.42 -8.16 -40.15 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -7.03 Total: 11.70 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -1.65 Total: -4.17 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.67 Total: -37.75 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -0.89 Total: -31.50 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.99 -8.16 -40.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869719589.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.875 kcal (2) G-P(sol) polarization free energy of solvation -31.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds