Wall clock time and date at job start Tue Mar 31 2020 18:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46968 * 2 1 4 4 C 1.53004 * 109.46991 * 119.99463 * 2 1 3 5 5 C 1.53000 * 109.47127 * 179.13364 * 4 2 1 6 6 C 1.53002 * 109.47044 * 299.12977 * 4 2 1 7 7 C 1.50696 * 109.47242 * 185.78059 * 6 4 2 8 8 C 1.38239 * 119.99934 * 83.36047 * 7 6 4 9 9 C 1.38231 * 120.00149 * 179.97438 * 8 7 6 10 10 C 1.38237 * 119.99835 * 359.97438 * 9 8 7 11 11 C 1.38232 * 119.99899 * 0.27642 * 10 9 8 12 12 C 1.38232 * 120.00171 * 359.53538 * 11 10 9 13 13 C 1.50701 * 109.47098 * 59.12846 * 4 2 1 14 14 O 1.20819 * 120.00050 * 247.25769 * 13 4 2 15 15 O 1.34225 * 119.99382 * 67.26595 * 13 4 2 16 16 C 1.45207 * 116.99736 * 179.97438 * 15 13 4 17 17 C 1.50700 * 109.46980 * 179.97438 * 16 15 13 18 18 O 1.21283 * 120.00370 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99773 * 179.97438 * 17 16 15 20 20 C 1.37095 * 120.00126 * 180.02562 * 19 17 16 21 21 H 1.07996 * 119.99972 * 0.02562 * 20 19 17 22 22 C 1.38954 * 120.00058 * 180.02562 * 20 19 17 23 23 N 1.31410 * 120.00006 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99748 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47351 * 59.99983 * 24 22 20 26 26 H 1.48502 * 109.47046 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47266 * 299.99942 * 24 22 20 28 28 H 1.08993 * 109.47742 * 300.00259 * 1 2 3 29 29 H 1.09003 * 109.47328 * 60.01083 * 1 2 3 30 30 H 1.09003 * 109.46662 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47529 * 239.99258 * 2 1 3 32 32 H 1.08995 * 109.47013 * 174.60420 * 3 2 1 33 33 H 1.09007 * 109.46433 * 294.60145 * 3 2 1 34 34 H 1.08995 * 109.46926 * 54.59886 * 3 2 1 35 35 H 1.08998 * 109.47047 * 180.02562 * 5 4 2 36 36 H 1.08997 * 109.46681 * 299.99841 * 5 4 2 37 37 H 1.09001 * 109.47199 * 59.99949 * 5 4 2 38 38 H 1.09005 * 109.46741 * 65.78422 * 6 4 2 39 39 H 1.08996 * 109.47737 * 305.78463 * 6 4 2 40 40 H 1.08002 * 119.99793 * 0.02562 * 8 7 6 41 41 H 1.07997 * 120.00096 * 180.02562 * 9 8 7 42 42 H 1.08007 * 119.99930 * 180.02562 * 10 9 8 43 43 H 1.08008 * 119.99293 * 179.72173 * 11 10 9 44 44 H 1.07999 * 119.99782 * 180.23397 * 12 11 10 45 45 H 1.08993 * 109.47233 * 300.00152 * 16 15 13 46 46 H 1.09006 * 109.46709 * 59.99846 * 16 15 13 47 47 H 0.97000 * 119.99784 * 0.02562 * 19 17 16 48 48 H 0.96992 * 119.99840 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5698 -0.7401 1.2385 6 6 1.5479 0.0128 2.4984 7 6 2.1646 -0.6115 3.7235 8 6 3.4332 -0.2373 4.1258 9 6 3.9987 -0.8095 5.2498 10 6 3.2955 -1.7555 5.9720 11 6 2.0291 -2.1335 5.5668 12 6 1.4620 -1.5584 4.4450 13 6 1.5200 -2.1356 1.2603 14 8 0.7231 -2.4798 2.1006 15 8 1.9426 -3.0130 0.3366 16 6 1.4000 -4.3580 0.4081 17 6 1.9843 -5.1949 -0.7006 18 8 2.7800 -4.7062 -1.4745 19 7 1.6234 -6.4869 -0.8314 20 6 2.1552 -7.2485 -1.8397 21 1 2.8637 -6.8133 -2.5288 22 6 1.7827 -8.5803 -1.9749 23 7 0.9202 -9.1097 -1.1366 24 14 2.5080 -9.6181 -3.3483 25 1 3.9847 -9.6718 -3.2011 26 1 1.9534 -10.9938 -3.2749 27 1 2.1629 -9.0141 -4.6602 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1256 1.4441 0.0966 33 1 1.7576 1.9276 -0.9345 34 1 1.5998 1.9835 0.8376 35 1 3.9331 -1.2542 2.1283 36 1 3.9203 -1.2629 0.3487 37 1 3.9458 0.2830 1.2306 38 1 0.4622 -0.0623 2.5598 39 1 1.8368 1.0622 2.4408 40 1 3.9820 0.5027 3.5622 41 1 4.9896 -0.5169 5.5643 42 1 3.7373 -2.2023 6.8505 43 1 1.4816 -2.8759 6.1286 44 1 0.4711 -1.8510 4.1306 45 1 1.6537 -4.8014 1.3709 46 1 0.3160 -4.3186 0.3006 47 1 0.9873 -6.8778 -0.2122 48 1 0.6605 -10.0395 -1.2308 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869719589.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:07 Heat of formation + Delta-G solvation = -128.798085 kcal Electronic energy + Delta-G solvation = -29453.894015 eV Core-core repulsion = 25472.706999 eV Total energy + Delta-G solvation = -3981.187016 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.23328 -40.47959 -39.83267 -38.42068 -37.33127 -36.05372 -33.66706 -33.44311 -31.82428 -31.28494 -29.99750 -28.51425 -27.53094 -26.67233 -25.10475 -23.34751 -22.78839 -22.16861 -21.46119 -20.13352 -20.08135 -18.30383 -18.13775 -17.79360 -17.54375 -17.00932 -16.51922 -16.40038 -15.94961 -15.86505 -15.68800 -15.34739 -15.21954 -14.80135 -14.42557 -14.21120 -13.98031 -13.77155 -13.67778 -13.65257 -13.57545 -13.27971 -13.13450 -12.94474 -12.92295 -12.55273 -12.51178 -12.32270 -12.14254 -12.11044 -12.03238 -11.82801 -11.65927 -11.58952 -11.50553 -11.39806 -11.10291 -10.53188 -10.14486 -9.70545 -9.51190 -8.54303 -6.05400 0.48412 0.58149 1.18617 1.35946 1.37534 1.45653 1.56039 1.84341 2.28402 2.90430 3.01144 3.10805 3.53687 3.56503 3.69954 3.91911 4.04867 4.08104 4.10108 4.16591 4.18586 4.21142 4.25343 4.31357 4.37570 4.57440 4.60668 4.69546 4.78129 4.83581 4.84553 4.90534 4.93144 5.01500 5.07146 5.17683 5.21303 5.25601 5.27032 5.33926 5.39625 5.45803 5.54813 5.63719 5.70723 5.82233 5.86554 6.20246 6.43756 6.72013 7.00216 7.36731 7.90195 8.62636 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013702 B = 0.002963 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.025853 B = 9448.956183 C =10566.696583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.085 4.085 3 C -0.144 4.144 4 C -0.030 4.030 5 C -0.149 4.149 6 C -0.059 4.059 7 C -0.100 4.100 8 C -0.115 4.115 9 C -0.135 4.135 10 C -0.132 4.132 11 C -0.145 4.145 12 C -0.113 4.113 13 C 0.461 3.539 14 O -0.519 6.519 15 O -0.343 6.343 16 C 0.072 3.928 17 C 0.437 3.563 18 O -0.615 6.615 19 N -0.558 5.558 20 C -0.340 4.340 21 H 0.085 0.915 22 C -0.008 4.008 23 N -0.916 5.916 24 Si 0.999 3.001 25 H -0.269 1.269 26 H -0.269 1.269 27 H -0.269 1.269 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.024 0.976 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.121 0.879 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.135 0.865 43 H 0.122 0.878 44 H 0.117 0.883 45 H 0.097 0.903 46 H 0.100 0.900 47 H 0.399 0.601 48 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.535 21.481 11.360 24.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.104 4.104 3 C -0.201 4.201 4 C -0.031 4.031 5 C -0.206 4.206 6 C -0.095 4.095 7 C -0.100 4.100 8 C -0.133 4.133 9 C -0.152 4.152 10 C -0.150 4.150 11 C -0.164 4.164 12 C -0.131 4.131 13 C 0.305 3.695 14 O -0.407 6.407 15 O -0.258 6.258 16 C -0.005 4.005 17 C 0.224 3.776 18 O -0.502 6.502 19 N -0.195 5.195 20 C -0.469 4.469 21 H 0.103 0.897 22 C -0.209 4.209 23 N -0.556 5.556 24 Si 0.821 3.179 25 H -0.194 1.194 26 H -0.193 1.193 27 H -0.194 1.194 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.043 0.957 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.127 0.873 38 H 0.096 0.904 39 H 0.139 0.861 40 H 0.165 0.835 41 H 0.161 0.839 42 H 0.153 0.847 43 H 0.140 0.860 44 H 0.135 0.865 45 H 0.115 0.885 46 H 0.118 0.882 47 H 0.233 0.767 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.724 21.464 11.107 24.229 hybrid contribution -0.501 -1.705 -0.161 1.785 sum 1.223 19.759 10.947 22.621 Atomic orbital electron populations 1.21972 0.94811 1.00683 1.03595 1.21185 0.96168 0.98351 0.94712 1.21957 1.02205 0.92539 1.03401 1.20677 0.98365 0.85422 0.98648 1.22125 0.91158 1.04839 1.02432 1.20720 1.00902 0.99974 0.87946 1.19986 0.95342 0.97764 0.96892 1.21380 0.94493 1.00569 0.96820 1.21451 1.00792 0.97282 0.95710 1.21428 0.94715 0.98162 1.00687 1.21387 0.96723 1.00665 0.97576 1.21378 1.00779 0.96178 0.94793 1.24566 0.78530 0.89101 0.77294 1.90574 1.33263 1.79810 1.37084 1.86568 1.65238 1.21060 1.52955 1.22420 0.99149 0.80407 0.98537 1.20069 0.86182 0.83257 0.88141 1.90513 1.39121 1.72760 1.47784 1.41742 1.40459 1.08310 1.28994 1.19704 1.25200 0.93140 1.08871 0.89722 1.26147 0.96483 0.97577 1.00695 1.69669 1.32379 1.15707 1.37811 0.84910 0.78505 0.76939 0.77533 1.19432 1.19294 1.19385 0.90556 0.90759 0.95715 0.91634 0.90852 0.91377 0.90410 0.92313 0.92868 0.87340 0.90374 0.86091 0.83549 0.83928 0.84725 0.85955 0.86527 0.88512 0.88159 0.76704 0.90922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 8.60 71.98 0.62 -2.46 16 2 C -0.09 -1.71 2.27 -10.79 -0.02 -1.73 16 3 C -0.14 -1.76 8.47 71.98 0.61 -1.15 16 4 C -0.03 -0.68 0.31 -52.93 -0.02 -0.70 16 5 C -0.15 -3.13 6.89 71.98 0.50 -2.64 16 6 C -0.06 -1.09 3.49 29.85 0.10 -0.99 16 7 C -0.10 -2.18 4.23 -19.87 -0.08 -2.27 16 8 C -0.11 -2.10 7.49 22.27 0.17 -1.93 16 9 C -0.13 -2.46 10.05 22.27 0.22 -2.23 16 10 C -0.13 -2.69 10.05 22.27 0.22 -2.47 16 11 C -0.15 -3.47 10.05 22.27 0.22 -3.24 16 12 C -0.11 -2.92 8.13 22.27 0.18 -2.74 16 13 C 0.46 14.76 4.95 71.24 0.35 15.11 16 14 O -0.52 -17.56 12.28 21.99 0.27 -17.29 16 15 O -0.34 -13.37 9.43 -45.02 -0.42 -13.79 16 16 C 0.07 2.91 5.94 71.24 0.42 3.33 16 17 C 0.44 22.13 7.86 87.66 0.69 22.82 16 18 O -0.62 -35.81 16.08 15.76 0.25 -35.56 16 19 N -0.56 -29.45 5.29 -306.99 -1.62 -31.07 16 20 C -0.34 -19.44 9.68 84.04 0.81 -18.63 16 21 H 0.08 5.10 7.16 -2.91 -0.02 5.08 16 22 C -0.01 -0.44 5.50 84.93 0.47 0.03 16 23 N -0.92 -49.34 13.05 21.66 0.28 -49.05 16 24 Si 1.00 42.44 29.55 68.60 2.03 44.47 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 26 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 27 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 28 H 0.08 1.27 6.58 -2.39 -0.02 1.26 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.02 0.63 7.19 -2.39 -0.02 0.61 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.07 0.77 6.18 -2.39 -0.01 0.75 16 33 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.08 0.69 6.59 -2.39 -0.02 0.67 16 35 H 0.06 1.34 5.83 -2.39 -0.01 1.33 16 36 H 0.05 1.37 7.99 -2.39 -0.02 1.35 16 37 H 0.11 1.44 6.23 -2.39 -0.01 1.43 16 38 H 0.08 1.58 6.34 -2.38 -0.02 1.56 16 39 H 0.12 1.44 6.22 -2.39 -0.01 1.43 16 40 H 0.15 1.83 7.54 -2.91 -0.02 1.81 16 41 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 42 H 0.13 2.15 8.06 -2.91 -0.02 2.12 16 43 H 0.12 2.63 8.06 -2.91 -0.02 2.61 16 44 H 0.12 3.32 6.54 -2.91 -0.02 3.30 16 45 H 0.10 3.61 8.13 -2.39 -0.02 3.59 16 46 H 0.10 3.67 8.13 -2.38 -0.02 3.65 16 47 H 0.40 19.95 7.90 -92.71 -0.73 19.22 16 48 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -71.24 382.42 6.50 -64.74 By element: Atomic # 1 Polarization: 39.20 SS G_CDS: 0.25 Total: 39.45 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: 5.47 Total: -1.90 kcal Atomic # 7 Polarization: -78.78 SS G_CDS: -1.34 Total: -80.12 kcal Atomic # 8 Polarization: -66.74 SS G_CDS: 0.10 Total: -66.64 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -71.24 6.50 -64.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869719589.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.056 kcal (2) G-P(sol) polarization free energy of solvation -71.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds