Wall clock time and date at job start Tue Mar 31 2020 17:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99709 * 2 1 4 4 H 1.08999 * 110.88781 * 26.11588 * 3 2 1 5 5 C 1.54910 * 110.99930 * 262.19571 * 3 2 1 6 6 N 1.47738 * 104.89879 * 278.87871 * 5 3 2 7 7 C 1.34780 * 125.81959 * 155.99247 * 6 5 3 8 8 O 1.21283 * 120.00322 * 180.02562 * 7 6 5 9 9 C 1.50699 * 119.99726 * 0.02562 * 7 6 5 10 10 C 1.50700 * 109.47299 * 180.02562 * 9 7 6 11 11 C 1.37642 * 120.12576 * 264.99968 * 10 9 7 12 12 C 1.38610 * 120.24754 * 179.97438 * 11 10 9 13 13 C 1.38655 * 120.50394 * 0.02677 * 12 11 10 14 14 C 1.37597 * 120.24854 * 0.02562 * 13 12 11 15 15 C 1.40701 * 120.13232 * 84.71977 * 10 9 7 16 16 C 1.41401 * 120.23749 * 359.97438 * 15 10 9 17 17 H 1.07997 * 120.00251 * 329.70556 * 16 15 10 18 18 C 1.39948 * 119.99192 * 149.70364 * 16 15 10 19 19 N 1.30825 * 119.99696 * 162.01777 * 18 16 15 20 20 Si 1.86793 * 120.00493 * 342.01318 * 18 16 15 21 21 H 1.48497 * 109.47373 * 95.40200 * 20 18 16 22 22 H 1.48502 * 109.47553 * 215.40519 * 20 18 16 23 23 H 1.48508 * 109.47120 * 335.40456 * 20 18 16 24 24 C 1.47016 * 108.53656 * 335.99451 * 6 5 3 25 25 C 1.52999 * 109.88636 * 120.42185 * 24 6 5 26 26 C 1.53005 * 109.88618 * 241.43777 * 24 6 5 27 27 O 1.42903 * 109.46673 * 303.27782 * 26 24 6 28 28 C 1.54326 * 107.40041 * 0.93024 * 24 6 5 29 29 H 1.09008 * 109.47048 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47460 * 299.99925 * 1 2 3 31 31 H 1.08999 * 109.47266 * 60.00510 * 1 2 3 32 32 H 1.09001 * 110.37289 * 37.77303 * 5 3 2 33 33 H 1.09000 * 110.36706 * 159.99163 * 5 3 2 34 34 H 1.09001 * 109.47196 * 299.99574 * 9 7 6 35 35 H 1.08995 * 109.47716 * 59.99931 * 9 7 6 36 36 H 1.08002 * 119.87782 * 359.97438 * 11 10 9 37 37 H 1.08002 * 119.74802 * 180.02562 * 12 11 10 38 38 H 1.08000 * 119.87627 * 180.02562 * 13 12 11 39 39 H 1.08000 * 120.12745 * 179.97438 * 14 13 12 40 40 H 0.96998 * 119.99976 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.47055 * 181.71814 * 25 24 6 42 42 H 1.09001 * 109.46888 * 61.72015 * 25 24 6 43 43 H 1.08997 * 109.47220 * 301.72304 * 25 24 6 44 44 H 1.08997 * 109.46805 * 63.27521 * 26 24 6 45 45 H 1.08993 * 109.47406 * 183.28014 * 26 24 6 46 46 H 0.96701 * 113.99856 * 179.97438 * 27 26 24 47 47 H 1.08999 * 110.72470 * 140.63859 * 28 24 6 48 48 H 1.09010 * 110.72247 * 263.72950 * 28 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3329 2.0324 0.4483 5 6 2.4153 1.7328 -1.4328 6 7 3.7176 1.0769 -1.6709 7 6 4.2395 0.7738 -2.8760 8 8 5.3223 0.2324 -2.9491 9 6 3.4776 1.1077 -4.1326 10 6 4.2734 0.6679 -5.3344 11 6 5.0915 1.5624 -5.9863 12 6 5.8250 1.1604 -7.0916 13 6 5.7435 -0.1444 -7.5537 14 6 4.9313 -1.0553 -6.9183 15 6 4.1874 -0.6602 -5.7909 16 6 3.3551 -1.5896 -5.1252 17 1 3.1764 -1.4915 -4.0647 18 6 2.7630 -2.6363 -5.8409 19 7 2.2950 -3.6801 -5.2060 20 14 2.6406 -2.5432 -7.7025 21 1 3.7896 -3.2610 -8.3106 22 1 1.3717 -3.1734 -8.1474 23 1 2.6633 -1.1210 -8.1296 24 6 4.3506 0.8092 -0.3712 25 6 4.5948 -0.6926 -0.2108 26 6 5.6771 1.5654 -0.2728 27 8 6.5206 1.1912 -1.3639 28 6 3.3823 1.3034 0.7242 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.6773 1.3848 -2.1556 33 1 2.5200 2.8162 -1.4903 34 1 2.5180 0.5909 -4.1238 35 1 3.3104 2.1837 -4.1811 36 1 5.1624 2.5813 -5.6353 37 1 6.4647 1.8688 -7.5968 38 1 6.3197 -0.4468 -8.4157 39 1 4.8690 -2.0710 -7.2802 40 1 1.8842 -4.4054 -5.7020 41 1 5.0360 -0.8865 0.7669 42 1 5.2747 -1.0355 -0.9907 43 1 3.6478 -1.2257 -0.2943 44 1 5.4875 2.6380 -0.3114 45 1 6.1681 1.3167 0.6679 46 1 7.3806 1.6333 -1.3658 47 1 3.3716 0.6146 1.5689 48 1 3.6503 2.3081 1.0513 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870528428.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:45 Heat of formation + Delta-G solvation = -96.474686 kcal Electronic energy + Delta-G solvation = -30728.660289 eV Core-core repulsion = 26748.874921 eV Total energy + Delta-G solvation = -3979.785368 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.24488 -38.28367 -37.43503 -36.44393 -35.33003 -33.45974 -32.22519 -31.13687 -30.36246 -30.17781 -26.83886 -26.63272 -26.16741 -25.10369 -24.68736 -22.08047 -21.32196 -20.86187 -19.37282 -17.86141 -17.23267 -17.17705 -16.72974 -16.33760 -15.58341 -15.39757 -15.09386 -14.86708 -14.61029 -14.28599 -14.14345 -13.73976 -13.46661 -13.35235 -13.07781 -12.67175 -12.61154 -12.33831 -12.02137 -11.97507 -11.95967 -11.84949 -11.64104 -11.40760 -11.40025 -11.23231 -10.87918 -10.75382 -10.68798 -10.57555 -10.41345 -10.13745 -9.72685 -9.60471 -9.57800 -9.41202 -9.00725 -8.65446 -7.97447 -7.46277 -7.35836 -6.80904 -4.33486 2.68988 2.84259 3.20605 3.27881 3.40762 3.53986 3.61595 3.72441 4.08880 4.29975 4.46262 4.63960 4.72547 4.97685 5.11638 5.20326 5.31276 5.34927 5.43534 5.47197 5.51553 5.53209 5.62478 5.66725 5.70714 5.78950 5.85903 5.97862 5.99516 6.08602 6.13977 6.23057 6.31199 6.42842 6.48076 6.70826 6.82150 6.85396 7.05566 7.08289 7.17951 7.33990 7.56915 7.79966 7.87843 8.04948 8.05163 8.25011 8.29871 8.51444 8.83175 8.96185 9.25473 10.21398 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012000 B = 0.004844 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.812200 B = 5779.459916 C = 7109.141562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.365 6.365 3 C 0.075 3.925 4 H 0.081 0.919 5 C 0.081 3.919 6 N -0.615 5.615 7 C 0.529 3.471 8 O -0.472 6.472 9 C -0.068 4.068 10 C -0.161 4.161 11 C -0.068 4.068 12 C -0.243 4.243 13 C -0.081 4.081 14 C -0.234 4.234 15 C 0.110 3.890 16 C -0.441 4.441 17 H 0.090 0.910 18 C 0.084 3.916 19 N -0.810 5.810 20 Si 0.908 3.092 21 H -0.272 1.272 22 H -0.294 1.294 23 H -0.244 1.244 24 C 0.173 3.827 25 C -0.152 4.152 26 C 0.070 3.930 27 O -0.520 6.520 28 C -0.121 4.121 29 H 0.087 0.913 30 H 0.038 0.962 31 H 0.043 0.957 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.282 0.718 41 H 0.048 0.952 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.035 0.965 45 H 0.042 0.958 46 H 0.357 0.643 47 H 0.091 0.909 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.079 11.706 12.203 17.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C 0.016 3.984 4 H 0.099 0.901 5 C -0.043 4.043 6 N -0.354 5.354 7 C 0.318 3.682 8 O -0.341 6.341 9 C -0.108 4.108 10 C -0.163 4.163 11 C -0.087 4.087 12 C -0.262 4.262 13 C -0.100 4.100 14 C -0.253 4.253 15 C 0.107 3.893 16 C -0.469 4.469 17 H 0.108 0.892 18 C -0.134 4.134 19 N -0.435 5.435 20 Si 0.735 3.265 21 H -0.198 1.198 22 H -0.221 1.221 23 H -0.168 1.168 24 C 0.087 3.913 25 C -0.209 4.209 26 C -0.009 4.009 27 O -0.322 6.322 28 C -0.159 4.159 29 H 0.105 0.895 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.053 0.947 45 H 0.060 0.940 46 H 0.202 0.798 47 H 0.109 0.891 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.967 10.555 11.947 16.215 hybrid contribution 0.080 0.475 -0.507 0.699 sum -2.887 11.029 11.440 16.151 Atomic orbital electron populations 1.22823 0.81101 1.03092 0.99619 1.88041 1.19440 1.26257 1.94624 1.23229 0.94527 0.85718 0.94949 0.90084 1.22759 0.87304 0.96938 0.97320 1.48631 1.19302 1.62616 1.04810 1.20567 0.86396 0.78667 0.82602 1.90724 1.20022 1.38388 1.84977 1.20264 0.99671 1.00129 0.90763 1.19098 1.04281 0.93809 0.99062 1.20392 0.95755 0.97130 0.95402 1.20295 1.07680 0.96191 1.02037 1.20567 0.97683 0.93814 0.97909 1.20971 1.03847 0.98325 1.02159 1.17481 0.90568 0.90968 0.90300 1.19433 1.24094 1.05737 0.97673 0.89201 1.26148 0.92899 0.93036 1.01281 1.69727 1.29458 1.05053 1.39232 0.86370 0.76612 0.80936 0.82538 1.19835 1.22126 1.16764 1.20793 0.90636 0.96091 0.83765 1.22064 1.03183 0.94111 1.01592 1.22535 0.91747 0.96590 0.90065 1.87218 1.29125 1.69144 1.46741 1.22841 0.93071 1.02301 0.97723 0.89473 0.94321 0.93842 0.90125 0.91294 0.88853 0.91196 0.89333 0.89197 0.89175 0.88473 0.90771 0.93315 0.90152 0.91643 0.94718 0.94038 0.79847 0.89086 0.89583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.84 101.05 1.10 1.40 16 2 O -0.37 -4.91 9.81 -35.23 -0.35 -5.25 16 3 C 0.07 0.81 3.55 -24.58 -0.09 0.73 16 4 H 0.08 0.63 7.83 -51.93 -0.41 0.22 16 5 C 0.08 1.04 6.44 -2.36 -0.02 1.02 16 6 N -0.61 -10.38 2.83 -155.56 -0.44 -10.82 16 7 C 0.53 11.21 6.82 -10.98 -0.07 11.14 16 8 O -0.47 -11.78 11.69 -19.16 -0.22 -12.01 16 9 C -0.07 -1.42 4.21 -29.04 -0.12 -1.54 16 10 C -0.16 -3.90 4.43 -103.91 -0.46 -4.36 16 11 C -0.07 -1.55 9.66 -39.66 -0.38 -1.93 16 12 C -0.24 -5.46 10.05 -39.29 -0.39 -5.85 16 13 C -0.08 -1.92 10.02 -39.66 -0.40 -2.32 16 14 C -0.23 -6.09 7.17 -38.87 -0.28 -6.36 16 15 C 0.11 2.94 5.10 -106.82 -0.54 2.40 16 16 C -0.44 -12.40 8.56 -37.74 -0.32 -12.73 16 17 H 0.09 2.71 6.99 -52.49 -0.37 2.34 16 18 C 0.08 2.30 5.41 -17.34 -0.09 2.21 16 19 N -0.81 -22.45 13.93 55.55 0.77 -21.67 16 20 Si 0.91 21.66 24.52 -169.99 -4.17 17.49 16 21 H -0.27 -6.40 6.71 56.52 0.38 -6.02 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.24 -5.93 6.85 56.52 0.39 -5.54 16 24 C 0.17 2.55 0.79 -130.84 -0.10 2.45 16 25 C -0.15 -2.61 8.26 37.16 0.31 -2.31 16 26 C 0.07 0.96 6.02 37.16 0.22 1.18 16 27 O -0.52 -8.91 9.32 -59.95 -0.56 -9.47 16 28 C -0.12 -1.29 5.75 -24.90 -0.14 -1.43 16 29 H 0.09 0.87 8.14 -51.92 -0.42 0.45 16 30 H 0.04 0.30 8.12 -51.93 -0.42 -0.12 16 31 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 1.08 7.51 -51.93 -0.39 0.69 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.09 1.98 6.87 -51.93 -0.36 1.62 16 35 H 0.07 1.22 8.05 -51.93 -0.42 0.80 16 36 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 38 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 39 H 0.10 2.53 4.74 -52.49 -0.25 2.28 16 40 H 0.28 7.10 8.30 -40.82 -0.34 6.76 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 1.72 6.44 -51.93 -0.33 1.39 16 43 H 0.06 1.22 7.43 -51.93 -0.39 0.84 16 44 H 0.03 0.42 8.07 -51.93 -0.42 0.00 16 45 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.36 4.56 9.12 45.56 0.42 4.97 16 47 H 0.09 0.92 7.83 -51.93 -0.41 0.51 16 48 H 0.09 0.69 7.80 -51.92 -0.40 0.28 16 LS Contribution 375.84 15.07 5.66 5.66 Total: -1.00 -34.65 375.84 -7.79 -42.45 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -6.70 Total: 9.92 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -1.80 Total: -16.31 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: 0.33 Total: -32.49 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -1.13 Total: -26.73 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.17 Total: 17.49 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.65 -7.79 -42.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870528428.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.029 kcal (2) G-P(sol) polarization free energy of solvation -34.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds