Wall clock time and date at job start Tue Mar 31 2020 17:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99709 * 2 1 4 4 H 1.08999 * 110.88781 * 26.11588 * 3 2 1 5 5 C 1.54910 * 110.99930 * 262.19571 * 3 2 1 6 6 N 1.47738 * 104.89879 * 278.87871 * 5 3 2 7 7 C 1.34780 * 125.81959 * 155.99247 * 6 5 3 8 8 O 1.21283 * 120.00322 * 180.02562 * 7 6 5 9 9 C 1.50699 * 119.99726 * 0.02562 * 7 6 5 10 10 C 1.50700 * 109.47299 * 180.02562 * 9 7 6 11 11 C 1.37642 * 120.12576 * 264.99968 * 10 9 7 12 12 C 1.38610 * 120.24754 * 179.97438 * 11 10 9 13 13 C 1.38655 * 120.50394 * 0.02677 * 12 11 10 14 14 C 1.37597 * 120.24854 * 0.02562 * 13 12 11 15 15 C 1.40701 * 120.13232 * 84.71977 * 10 9 7 16 16 C 1.41401 * 120.23749 * 359.97438 * 15 10 9 17 17 H 1.07997 * 120.00251 * 329.70556 * 16 15 10 18 18 C 1.39948 * 119.99192 * 149.70364 * 16 15 10 19 19 N 1.30825 * 119.99696 * 162.01777 * 18 16 15 20 20 Si 1.86793 * 120.00493 * 342.01318 * 18 16 15 21 21 H 1.48497 * 109.47373 * 95.40200 * 20 18 16 22 22 H 1.48502 * 109.47553 * 215.40519 * 20 18 16 23 23 H 1.48508 * 109.47120 * 335.40456 * 20 18 16 24 24 C 1.47016 * 108.53656 * 335.99451 * 6 5 3 25 25 C 1.52999 * 109.88636 * 120.42185 * 24 6 5 26 26 C 1.53005 * 109.88618 * 241.43777 * 24 6 5 27 27 O 1.42903 * 109.46673 * 303.27782 * 26 24 6 28 28 C 1.54326 * 107.40041 * 0.93024 * 24 6 5 29 29 H 1.09008 * 109.47048 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47460 * 299.99925 * 1 2 3 31 31 H 1.08999 * 109.47266 * 60.00510 * 1 2 3 32 32 H 1.09001 * 110.37289 * 37.77303 * 5 3 2 33 33 H 1.09000 * 110.36706 * 159.99163 * 5 3 2 34 34 H 1.09001 * 109.47196 * 299.99574 * 9 7 6 35 35 H 1.08995 * 109.47716 * 59.99931 * 9 7 6 36 36 H 1.08002 * 119.87782 * 359.97438 * 11 10 9 37 37 H 1.08002 * 119.74802 * 180.02562 * 12 11 10 38 38 H 1.08000 * 119.87627 * 180.02562 * 13 12 11 39 39 H 1.08000 * 120.12745 * 179.97438 * 14 13 12 40 40 H 0.96998 * 119.99976 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.47055 * 181.71814 * 25 24 6 42 42 H 1.09001 * 109.46888 * 61.72015 * 25 24 6 43 43 H 1.08997 * 109.47220 * 301.72304 * 25 24 6 44 44 H 1.08997 * 109.46805 * 63.27521 * 26 24 6 45 45 H 1.08993 * 109.47406 * 183.28014 * 26 24 6 46 46 H 0.96701 * 113.99856 * 179.97438 * 27 26 24 47 47 H 1.08999 * 110.72470 * 140.63859 * 28 24 6 48 48 H 1.09010 * 110.72247 * 263.72950 * 28 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3329 2.0324 0.4483 5 6 2.4153 1.7328 -1.4328 6 7 3.7176 1.0769 -1.6709 7 6 4.2395 0.7738 -2.8760 8 8 5.3223 0.2324 -2.9491 9 6 3.4776 1.1077 -4.1326 10 6 4.2734 0.6679 -5.3344 11 6 5.0915 1.5624 -5.9863 12 6 5.8250 1.1604 -7.0916 13 6 5.7435 -0.1444 -7.5537 14 6 4.9313 -1.0553 -6.9183 15 6 4.1874 -0.6602 -5.7909 16 6 3.3551 -1.5896 -5.1252 17 1 3.1764 -1.4915 -4.0647 18 6 2.7630 -2.6363 -5.8409 19 7 2.2950 -3.6801 -5.2060 20 14 2.6406 -2.5432 -7.7025 21 1 3.7896 -3.2610 -8.3106 22 1 1.3717 -3.1734 -8.1474 23 1 2.6633 -1.1210 -8.1296 24 6 4.3506 0.8092 -0.3712 25 6 4.5948 -0.6926 -0.2108 26 6 5.6771 1.5654 -0.2728 27 8 6.5206 1.1912 -1.3639 28 6 3.3823 1.3034 0.7242 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.6773 1.3848 -2.1556 33 1 2.5200 2.8162 -1.4903 34 1 2.5180 0.5909 -4.1238 35 1 3.3104 2.1837 -4.1811 36 1 5.1624 2.5813 -5.6353 37 1 6.4647 1.8688 -7.5968 38 1 6.3197 -0.4468 -8.4157 39 1 4.8690 -2.0710 -7.2802 40 1 1.8842 -4.4054 -5.7020 41 1 5.0360 -0.8865 0.7669 42 1 5.2747 -1.0355 -0.9907 43 1 3.6478 -1.2257 -0.2943 44 1 5.4875 2.6380 -0.3114 45 1 6.1681 1.3167 0.6679 46 1 7.3806 1.6333 -1.3658 47 1 3.3716 0.6146 1.5689 48 1 3.6503 2.3081 1.0513 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870528428.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:44 Heat of formation + Delta-G solvation = -121.142983 kcal Electronic energy + Delta-G solvation = -30729.729987 eV Core-core repulsion = 26748.874921 eV Total energy + Delta-G solvation = -3980.855066 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.46031 -39.91487 -38.78041 -37.79634 -36.50555 -35.47708 -33.76418 -32.67477 -32.12445 -31.43271 -28.54027 -27.68069 -27.24714 -26.69425 -26.06671 -23.42458 -23.07258 -22.17642 -20.99537 -19.27796 -19.15942 -18.30400 -17.78962 -17.64896 -17.44094 -16.68940 -16.34549 -16.19667 -15.88275 -15.78163 -15.53415 -15.46415 -14.87223 -14.74729 -14.54248 -14.31592 -13.86673 -13.74288 -13.65419 -13.58604 -13.23690 -13.11073 -13.08568 -12.74373 -12.66032 -12.61276 -12.48326 -12.37250 -12.34308 -11.98410 -11.79892 -11.53045 -11.49156 -11.34862 -10.96547 -10.72442 -10.61464 -10.27856 -9.38428 -9.29486 -9.25197 -8.85268 -6.43271 0.81615 0.91967 1.24978 1.38585 1.47874 2.10619 2.14284 2.25850 2.65582 2.84636 3.31752 3.50658 3.59944 3.75758 4.05623 4.14308 4.18665 4.24986 4.30448 4.39125 4.44391 4.46723 4.48330 4.54799 4.56466 4.61377 4.65589 4.68690 4.71943 4.77204 4.79985 4.90606 4.92297 4.94981 4.98220 5.02974 5.11694 5.17764 5.38510 5.40800 5.68187 5.79590 5.88882 5.97371 6.07231 6.31690 6.36432 6.47986 6.80600 6.85943 6.92924 7.08386 7.72005 8.23446 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012000 B = 0.004844 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.812200 B = 5779.459916 C = 7109.141562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.075 3.925 4 H 0.127 0.873 5 C 0.070 3.930 6 N -0.615 5.615 7 C 0.524 3.476 8 O -0.523 6.523 9 C -0.066 4.066 10 C -0.167 4.167 11 C -0.077 4.077 12 C -0.227 4.227 13 C -0.092 4.092 14 C -0.256 4.256 15 C 0.083 3.917 16 C -0.467 4.467 17 H 0.047 0.953 18 C 0.045 3.955 19 N -0.855 5.855 20 Si 0.967 3.033 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.250 1.250 24 C 0.160 3.840 25 C -0.143 4.143 26 C 0.069 3.931 27 O -0.558 6.558 28 C -0.109 4.109 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.044 0.956 32 H 0.065 0.935 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.122 0.878 39 H 0.089 0.911 40 H 0.290 0.710 41 H 0.074 0.926 42 H 0.027 0.973 43 H 0.038 0.962 44 H 0.060 0.940 45 H 0.065 0.935 46 H 0.370 0.630 47 H 0.098 0.902 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.968 15.619 12.646 20.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C 0.017 3.983 4 H 0.145 0.855 5 C -0.053 4.053 6 N -0.352 5.352 7 C 0.312 3.688 8 O -0.397 6.397 9 C -0.105 4.105 10 C -0.168 4.168 11 C -0.095 4.095 12 C -0.246 4.246 13 C -0.110 4.110 14 C -0.275 4.275 15 C 0.081 3.919 16 C -0.497 4.497 17 H 0.065 0.935 18 C -0.168 4.168 19 N -0.482 5.482 20 Si 0.790 3.210 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.174 1.174 24 C 0.075 3.925 25 C -0.201 4.201 26 C -0.010 4.010 27 O -0.363 6.363 28 C -0.146 4.146 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.124 0.876 34 H 0.095 0.905 35 H 0.125 0.875 36 H 0.141 0.859 37 H 0.147 0.853 38 H 0.140 0.860 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.046 0.954 43 H 0.057 0.943 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.217 0.783 47 H 0.116 0.884 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.891 14.496 12.429 19.312 hybrid contribution 0.153 -0.595 -0.583 0.846 sum -2.739 13.901 11.846 18.468 Atomic orbital electron populations 1.22938 0.79798 1.03069 1.01175 1.88012 1.21173 1.28388 1.94739 1.23459 0.95532 0.85674 0.93663 0.85523 1.23154 0.84938 0.98616 0.98592 1.48575 1.20694 1.61492 1.04424 1.20507 0.85875 0.78376 0.83991 1.90697 1.22215 1.40718 1.86052 1.20246 0.98280 1.01966 0.90047 1.19553 1.04277 0.93237 0.99749 1.20830 0.94941 0.98501 0.95218 1.20853 1.06361 0.96298 1.01063 1.20961 0.97254 0.94002 0.98786 1.21109 1.04934 0.98794 1.02670 1.17709 0.90950 0.92044 0.91217 1.19271 1.26553 1.07888 0.95963 0.93452 1.26832 0.92374 0.92452 1.05160 1.69769 1.31536 1.06038 1.40871 0.85480 0.77343 0.80475 0.77663 1.19300 1.20258 1.17396 1.21156 0.92857 0.94291 0.84174 1.21953 1.00491 0.96599 1.01072 1.22678 0.90615 0.97602 0.90105 1.87204 1.30436 1.70171 1.48485 1.22895 0.91231 1.04509 0.96006 0.90527 0.91149 0.93708 0.91675 0.87589 0.90498 0.87539 0.85878 0.85277 0.85991 0.89303 0.89977 0.90667 0.95386 0.94283 0.92203 0.91671 0.78313 0.88377 0.85477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.84 113.37 1.23 1.74 16 2 O -0.40 -10.66 9.81 -148.98 -1.46 -12.12 16 3 C 0.07 1.41 3.55 31.99 0.11 1.53 16 4 H 0.13 1.29 7.83 -2.39 -0.02 1.27 16 5 C 0.07 1.66 6.44 86.79 0.56 2.21 16 6 N -0.62 -20.67 2.83 -764.46 -2.16 -22.84 16 7 C 0.52 22.91 6.82 87.66 0.60 23.51 16 8 O -0.52 -27.49 11.69 20.59 0.24 -27.25 16 9 C -0.07 -2.78 4.21 29.10 0.12 -2.65 16 10 C -0.17 -8.13 4.43 -19.40 -0.09 -8.22 16 11 C -0.08 -3.30 9.66 22.22 0.21 -3.09 16 12 C -0.23 -9.45 10.05 22.46 0.23 -9.22 16 13 C -0.09 -4.15 10.02 22.22 0.22 -3.93 16 14 C -0.26 -13.44 7.17 22.73 0.16 -13.28 16 15 C 0.08 4.63 5.10 -21.29 -0.11 4.52 16 16 C -0.47 -28.21 8.56 23.46 0.20 -28.01 16 17 H 0.05 3.16 6.99 -2.91 -0.02 3.14 16 18 C 0.05 2.60 5.41 85.26 0.46 3.06 16 19 N -0.86 -50.45 13.93 21.83 0.30 -50.15 16 20 Si 0.97 46.17 24.52 68.60 1.68 47.85 16 21 H -0.27 -12.39 6.71 99.48 0.67 -11.72 16 22 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.25 -12.04 6.85 99.48 0.68 -11.36 16 24 C 0.16 4.58 0.79 3.96 0.00 4.58 16 25 C -0.14 -5.19 8.26 71.98 0.59 -4.60 16 26 C 0.07 1.73 6.02 71.98 0.43 2.16 16 27 O -0.56 -19.22 9.32 -125.35 -1.17 -20.39 16 28 C -0.11 -1.92 5.75 31.78 0.18 -1.74 16 29 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.07 0.89 8.12 -2.39 -0.02 0.88 16 31 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 1.74 7.51 -2.39 -0.02 1.72 16 33 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.08 3.47 6.87 -2.39 -0.02 3.46 16 35 H 0.11 3.56 8.05 -2.39 -0.02 3.55 16 36 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 37 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 38 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 39 H 0.09 4.71 4.74 -2.91 -0.01 4.70 16 40 H 0.29 15.40 8.30 -92.71 -0.77 14.63 16 41 H 0.07 2.20 8.14 -2.39 -0.02 2.19 16 42 H 0.03 1.28 6.44 -2.39 -0.02 1.27 16 43 H 0.04 1.57 7.43 -2.39 -0.02 1.55 16 44 H 0.06 1.21 8.07 -2.39 -0.02 1.19 16 45 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.37 9.43 9.12 -74.06 -0.68 8.75 16 47 H 0.10 1.65 7.83 -2.39 -0.02 1.63 16 48 H 0.13 1.26 7.80 -2.38 -0.02 1.24 16 Total: -1.00 -83.73 375.84 2.79 -80.94 By element: Atomic # 1 Polarization: 35.16 SS G_CDS: 0.23 Total: 35.39 kcal Atomic # 6 Polarization: -36.55 SS G_CDS: 5.13 Total: -31.42 kcal Atomic # 7 Polarization: -71.12 SS G_CDS: -1.86 Total: -72.98 kcal Atomic # 8 Polarization: -57.38 SS G_CDS: -2.39 Total: -59.77 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.68 Total: 47.85 kcal Total: -83.73 2.79 -80.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870528428.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.205 kcal (2) G-P(sol) polarization free energy of solvation -83.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds