Wall clock time and date at job start Tue Mar 31 2020 17:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 114.00126 * 2 1 4 4 H 1.09000 * 110.88587 * 333.87788 * 3 2 1 5 5 C 1.55131 * 110.94045 * 97.95518 * 3 2 1 6 6 N 1.47429 * 104.71901 * 155.29100 * 5 3 2 7 7 C 1.34782 * 125.64270 * 155.81967 * 6 5 3 8 8 O 1.21284 * 119.99262 * 179.68574 * 7 6 5 9 9 C 1.50692 * 120.00254 * 359.69138 * 7 6 5 10 10 C 1.50703 * 109.47323 * 180.02562 * 9 7 6 11 11 C 1.37635 * 120.12526 * 265.27643 * 10 9 7 12 12 C 1.38615 * 120.24935 * 180.29867 * 11 10 9 13 13 C 1.38655 * 120.49901 * 359.71366 * 12 11 10 14 14 C 1.37605 * 120.24925 * 359.97438 * 13 12 11 15 15 C 1.40695 * 120.12816 * 84.99033 * 10 9 7 16 16 C 1.41394 * 120.24798 * 359.97438 * 15 10 9 17 17 H 1.08004 * 119.99622 * 334.39051 * 16 15 10 18 18 C 1.39949 * 120.00116 * 154.65941 * 16 15 10 19 19 N 1.30816 * 120.00108 * 344.35503 * 18 16 15 20 20 Si 1.86802 * 119.99592 * 164.35173 * 18 16 15 21 21 H 1.48499 * 109.47403 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.46800 * 120.00246 * 20 18 16 23 23 H 1.48506 * 109.46673 * 239.99951 * 20 18 16 24 24 C 1.47016 * 108.70555 * 335.54905 * 6 5 3 25 25 C 1.52995 * 109.88459 * 241.71729 * 24 6 5 26 26 C 1.52998 * 109.88074 * 120.70761 * 24 6 5 27 27 O 1.42903 * 109.47252 * 61.45658 * 26 24 6 28 28 C 1.54326 * 107.27241 * 1.29355 * 24 6 5 29 29 H 1.08996 * 109.47274 * 300.00430 * 1 2 3 30 30 H 1.09003 * 109.47141 * 60.00409 * 1 2 3 31 31 H 1.08998 * 109.47253 * 179.97438 * 1 2 3 32 32 H 1.08993 * 110.49762 * 36.44780 * 5 3 2 33 33 H 1.08993 * 110.34284 * 274.05110 * 5 3 2 34 34 H 1.08997 * 109.47516 * 59.99857 * 9 7 6 35 35 H 1.09007 * 109.46730 * 299.99804 * 9 7 6 36 36 H 1.08001 * 119.87993 * 0.04033 * 11 10 9 37 37 H 1.07998 * 119.75331 * 179.74214 * 12 11 10 38 38 H 1.07994 * 119.87750 * 179.97438 * 13 12 11 39 39 H 1.07996 * 120.12678 * 180.02562 * 14 13 12 40 40 H 0.97000 * 120.00074 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.47276 * 58.54915 * 25 24 6 42 42 H 1.09004 * 109.47045 * 178.54659 * 25 24 6 43 43 H 1.09002 * 109.47199 * 298.54746 * 25 24 6 44 44 H 1.09003 * 109.47669 * 181.45630 * 26 24 6 45 45 H 1.08999 * 109.47112 * 301.45552 * 26 24 6 46 46 H 0.96703 * 113.99927 * 180.02562 * 27 26 24 47 47 H 1.08999 * 110.72503 * 140.55539 * 28 24 6 48 48 H 1.08999 * 110.71693 * 263.83062 * 28 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3330 2.0323 -0.4484 5 6 2.4189 1.7303 1.4349 6 7 3.4904 2.7241 1.2404 7 6 3.8367 3.6875 2.1170 8 8 4.7421 4.4502 1.8534 9 6 3.0990 3.8170 3.4246 10 6 3.6757 4.9629 4.2155 11 6 4.6494 4.7295 5.1599 12 6 5.1773 5.7807 5.8932 13 6 4.7364 7.0780 5.6809 14 6 3.7684 7.3356 4.7374 15 6 3.2252 6.2760 3.9872 16 6 2.2301 6.5287 3.0150 17 1 2.1033 5.8514 2.1834 18 6 1.4132 7.6595 3.1273 19 7 1.3493 8.3103 4.2603 20 14 0.4143 8.2395 1.6592 21 1 0.6614 7.3383 0.5051 22 1 -1.0300 8.2186 2.0040 23 1 0.8179 9.6232 1.3015 24 6 4.1229 2.4860 -0.0652 25 6 5.5999 2.1368 0.1280 26 6 3.9938 3.7338 -0.9412 27 8 4.6676 4.8273 -0.3148 28 6 3.3824 1.3032 -0.7243 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 2.7933 0.8733 1.9947 33 1 1.5723 2.1817 1.9520 34 1 3.2033 2.8933 3.9938 35 1 2.0434 4.0060 3.2290 36 1 5.0005 3.7230 5.3332 37 1 5.9380 5.5879 6.6351 38 1 5.1543 7.8895 6.2582 39 1 3.4268 8.3469 4.5735 40 1 0.7828 9.0939 4.3382 41 1 5.6845 1.2520 0.7590 42 1 6.0558 1.9365 -0.8416 43 1 6.1117 2.9730 0.6043 44 1 4.4418 3.5414 -1.9161 45 1 2.9399 3.9811 -1.0681 46 1 4.6264 5.6535 -0.8156 47 1 3.2547 1.4754 -1.7930 48 1 3.9122 0.3679 -0.5438 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870528431.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:00 Heat of formation + Delta-G solvation = -99.681318 kcal Electronic energy + Delta-G solvation = -30478.594371 eV Core-core repulsion = 26498.669952 eV Total energy + Delta-G solvation = -3979.924418 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.31611 -38.26781 -37.47896 -36.45257 -35.44493 -33.55697 -32.26812 -31.08066 -30.42014 -29.35583 -26.83710 -26.63233 -26.32091 -25.12718 -24.86721 -22.11249 -21.11534 -20.81564 -19.35435 -17.94424 -17.27312 -17.06067 -16.72486 -16.42698 -15.51020 -15.41097 -15.07788 -14.89847 -14.71871 -14.45959 -14.02402 -13.78770 -13.43806 -13.26795 -13.16908 -12.79686 -12.56957 -12.34957 -12.28431 -12.08918 -11.93297 -11.62911 -11.61272 -11.51191 -11.28317 -11.09858 -10.97536 -10.91657 -10.72104 -10.63083 -10.56953 -10.32594 -9.85946 -9.55386 -9.41119 -9.27039 -9.11173 -8.71604 -8.12210 -7.22251 -7.20440 -6.66653 -4.26584 2.81258 2.99633 3.07710 3.12160 3.26130 3.31890 3.60218 3.74091 3.96411 4.32779 4.38669 4.65935 4.73118 4.82348 5.05983 5.12052 5.16804 5.20283 5.39308 5.44531 5.50409 5.53458 5.59340 5.64365 5.73846 5.76486 5.81142 5.88100 5.95688 6.07701 6.17156 6.19267 6.37563 6.52341 6.55952 6.59925 6.83089 6.91627 6.97029 7.15526 7.38798 7.51177 7.72960 8.00039 8.10259 8.11000 8.19560 8.21800 8.39831 8.73469 8.99873 9.10155 9.15763 10.26900 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010690 B = 0.004601 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.650671 B = 6084.115576 C = 6952.548341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.376 6.376 3 C 0.073 3.927 4 H 0.079 0.921 5 C 0.084 3.916 6 N -0.621 5.621 7 C 0.525 3.475 8 O -0.467 6.467 9 C -0.066 4.066 10 C -0.176 4.176 11 C -0.082 4.082 12 C -0.239 4.239 13 C -0.109 4.109 14 C -0.160 4.160 15 C 0.129 3.871 16 C -0.450 4.450 17 H 0.074 0.926 18 C 0.075 3.925 19 N -0.798 5.798 20 Si 0.902 3.098 21 H -0.263 1.263 22 H -0.276 1.276 23 H -0.273 1.273 24 C 0.169 3.831 25 C -0.150 4.150 26 C 0.070 3.930 27 O -0.519 6.519 28 C -0.118 4.118 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.118 0.882 40 H 0.277 0.723 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.083 0.917 44 H 0.041 0.959 45 H 0.037 0.963 46 H 0.361 0.639 47 H 0.083 0.917 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.240 -12.740 -10.721 16.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.294 6.294 3 C 0.015 3.985 4 H 0.097 0.903 5 C -0.040 4.040 6 N -0.362 5.362 7 C 0.313 3.687 8 O -0.336 6.336 9 C -0.105 4.105 10 C -0.178 4.178 11 C -0.100 4.100 12 C -0.258 4.258 13 C -0.127 4.127 14 C -0.179 4.179 15 C 0.127 3.873 16 C -0.480 4.480 17 H 0.092 0.908 18 C -0.141 4.141 19 N -0.424 5.424 20 Si 0.727 3.273 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.198 1.198 24 C 0.083 3.917 25 C -0.208 4.208 26 C -0.009 4.009 27 O -0.322 6.322 28 C -0.156 4.156 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.136 0.864 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.101 0.899 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.207 0.793 47 H 0.101 0.899 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.589 -12.638 -10.215 16.328 hybrid contribution -1.025 0.880 -1.090 1.736 sum -2.613 -11.759 -11.305 16.520 Atomic orbital electron populations 1.22841 0.80756 1.02823 1.00371 1.87892 1.19923 1.26746 1.94833 1.23348 0.94769 0.84947 0.95478 0.90287 1.22633 0.91547 0.92823 0.97010 1.48678 1.36046 1.33238 1.18229 1.20824 0.84609 0.78490 0.84728 1.90738 1.28742 1.39255 1.74849 1.20250 1.00404 0.97945 0.91932 1.19079 1.04088 0.93052 1.01608 1.20287 0.96509 0.96453 0.96781 1.20295 1.06191 0.93577 1.05741 1.20669 0.98104 0.95190 0.98745 1.21333 0.97834 0.99549 0.99175 1.17320 0.89948 0.89591 0.90437 1.19489 1.13749 1.06645 1.08106 0.90800 1.25873 0.96575 0.95655 0.96021 1.69827 1.32408 1.16137 1.24046 0.86369 0.79147 0.79407 0.82374 1.18723 1.20182 1.19798 1.20829 0.94067 0.92473 0.84282 1.22053 0.94802 1.02539 1.01448 1.22472 0.95724 0.88602 0.94149 1.87141 1.76779 1.19612 1.48645 1.22758 0.94593 0.98482 0.99752 0.93560 0.93949 0.89532 0.90962 0.90402 0.91202 0.89236 0.89906 0.89784 0.89705 0.86391 0.91170 0.92920 0.92610 0.89851 0.94073 0.94453 0.79338 0.89862 0.89022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.85 101.05 1.10 1.32 16 2 O -0.38 -4.00 10.51 -35.23 -0.37 -4.37 16 3 C 0.07 0.80 3.56 -24.46 -0.09 0.72 16 4 H 0.08 0.83 7.83 -51.93 -0.41 0.42 16 5 C 0.08 1.09 6.44 -2.41 -0.02 1.07 16 6 N -0.62 -10.03 2.82 -155.68 -0.44 -10.47 16 7 C 0.52 10.73 6.97 -10.99 -0.08 10.65 16 8 O -0.47 -11.22 11.72 -19.19 -0.22 -11.44 16 9 C -0.07 -1.36 4.18 -29.04 -0.12 -1.48 16 10 C -0.18 -4.37 4.43 -103.91 -0.46 -4.83 16 11 C -0.08 -1.96 9.66 -39.66 -0.38 -2.34 16 12 C -0.24 -5.73 10.05 -39.29 -0.39 -6.12 16 13 C -0.11 -2.72 10.02 -39.66 -0.40 -3.12 16 14 C -0.16 -4.35 8.69 -38.87 -0.34 -4.68 16 15 C 0.13 3.51 5.58 -106.83 -0.60 2.92 16 16 C -0.45 -11.95 8.16 -37.74 -0.31 -12.25 16 17 H 0.07 1.94 6.66 -52.48 -0.35 1.59 16 18 C 0.08 1.91 5.18 -17.34 -0.09 1.82 16 19 N -0.80 -20.82 10.87 55.55 0.60 -20.22 16 20 Si 0.90 18.95 29.59 -169.99 -5.03 13.92 16 21 H -0.26 -5.49 7.11 56.52 0.40 -5.08 16 22 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 C 0.17 2.35 0.79 -130.85 -0.10 2.24 16 25 C -0.15 -2.13 8.27 37.16 0.31 -1.82 16 26 C 0.07 0.99 5.96 37.16 0.22 1.21 16 27 O -0.52 -9.19 9.24 -59.97 -0.55 -9.75 16 28 C -0.12 -1.25 5.76 -24.89 -0.14 -1.40 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.04 0.30 8.12 -51.93 -0.42 -0.13 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.08 0.99 7.48 -51.93 -0.39 0.60 16 34 H 0.07 1.26 8.06 -51.93 -0.42 0.85 16 35 H 0.09 1.84 6.77 -51.93 -0.35 1.49 16 36 H 0.08 1.77 8.06 -52.49 -0.42 1.34 16 37 H 0.08 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.08 1.90 8.06 -52.49 -0.42 1.48 16 39 H 0.12 3.30 6.12 -52.49 -0.32 2.98 16 40 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.08 1.49 6.45 -51.93 -0.33 1.16 16 44 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.36 5.16 9.12 45.56 0.42 5.58 16 47 H 0.08 0.73 7.83 -51.93 -0.41 0.33 16 48 H 0.09 0.94 7.86 -51.93 -0.41 0.53 16 LS Contribution 382.34 15.07 5.76 5.76 Total: -1.00 -32.35 382.34 -8.89 -41.24 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -6.75 Total: 11.42 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -1.89 Total: -16.09 kcal Atomic # 7 Polarization: -30.85 SS G_CDS: 0.16 Total: -30.69 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -1.15 Total: -25.56 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.35 -8.89 -41.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870528431.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.438 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds