Wall clock time and date at job start Tue Mar 31 2020 17:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 114.00126 * 2 1 4 4 H 1.09000 * 110.88587 * 333.87788 * 3 2 1 5 5 C 1.55131 * 110.94045 * 97.95518 * 3 2 1 6 6 N 1.47429 * 104.71901 * 155.29100 * 5 3 2 7 7 C 1.34782 * 125.64270 * 155.81967 * 6 5 3 8 8 O 1.21284 * 119.99262 * 179.68574 * 7 6 5 9 9 C 1.50692 * 120.00254 * 359.69138 * 7 6 5 10 10 C 1.50703 * 109.47323 * 180.02562 * 9 7 6 11 11 C 1.37635 * 120.12526 * 265.27643 * 10 9 7 12 12 C 1.38615 * 120.24935 * 180.29867 * 11 10 9 13 13 C 1.38655 * 120.49901 * 359.71366 * 12 11 10 14 14 C 1.37605 * 120.24925 * 359.97438 * 13 12 11 15 15 C 1.40695 * 120.12816 * 84.99033 * 10 9 7 16 16 C 1.41394 * 120.24798 * 359.97438 * 15 10 9 17 17 H 1.08004 * 119.99622 * 334.39051 * 16 15 10 18 18 C 1.39949 * 120.00116 * 154.65941 * 16 15 10 19 19 N 1.30816 * 120.00108 * 344.35503 * 18 16 15 20 20 Si 1.86802 * 119.99592 * 164.35173 * 18 16 15 21 21 H 1.48499 * 109.47403 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.46800 * 120.00246 * 20 18 16 23 23 H 1.48506 * 109.46673 * 239.99951 * 20 18 16 24 24 C 1.47016 * 108.70555 * 335.54905 * 6 5 3 25 25 C 1.52995 * 109.88459 * 241.71729 * 24 6 5 26 26 C 1.52998 * 109.88074 * 120.70761 * 24 6 5 27 27 O 1.42903 * 109.47252 * 61.45658 * 26 24 6 28 28 C 1.54326 * 107.27241 * 1.29355 * 24 6 5 29 29 H 1.08996 * 109.47274 * 300.00430 * 1 2 3 30 30 H 1.09003 * 109.47141 * 60.00409 * 1 2 3 31 31 H 1.08998 * 109.47253 * 179.97438 * 1 2 3 32 32 H 1.08993 * 110.49762 * 36.44780 * 5 3 2 33 33 H 1.08993 * 110.34284 * 274.05110 * 5 3 2 34 34 H 1.08997 * 109.47516 * 59.99857 * 9 7 6 35 35 H 1.09007 * 109.46730 * 299.99804 * 9 7 6 36 36 H 1.08001 * 119.87993 * 0.04033 * 11 10 9 37 37 H 1.07998 * 119.75331 * 179.74214 * 12 11 10 38 38 H 1.07994 * 119.87750 * 179.97438 * 13 12 11 39 39 H 1.07996 * 120.12678 * 180.02562 * 14 13 12 40 40 H 0.97000 * 120.00074 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.47276 * 58.54915 * 25 24 6 42 42 H 1.09004 * 109.47045 * 178.54659 * 25 24 6 43 43 H 1.09002 * 109.47199 * 298.54746 * 25 24 6 44 44 H 1.09003 * 109.47669 * 181.45630 * 26 24 6 45 45 H 1.08999 * 109.47112 * 301.45552 * 26 24 6 46 46 H 0.96703 * 113.99927 * 180.02562 * 27 26 24 47 47 H 1.08999 * 110.72503 * 140.55539 * 28 24 6 48 48 H 1.08999 * 110.71693 * 263.83062 * 28 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3330 2.0323 -0.4484 5 6 2.4189 1.7303 1.4349 6 7 3.4904 2.7241 1.2404 7 6 3.8367 3.6875 2.1170 8 8 4.7421 4.4502 1.8534 9 6 3.0990 3.8170 3.4246 10 6 3.6757 4.9629 4.2155 11 6 4.6494 4.7295 5.1599 12 6 5.1773 5.7807 5.8932 13 6 4.7364 7.0780 5.6809 14 6 3.7684 7.3356 4.7374 15 6 3.2252 6.2760 3.9872 16 6 2.2301 6.5287 3.0150 17 1 2.1033 5.8514 2.1834 18 6 1.4132 7.6595 3.1273 19 7 1.3493 8.3103 4.2603 20 14 0.4143 8.2395 1.6592 21 1 0.6614 7.3383 0.5051 22 1 -1.0300 8.2186 2.0040 23 1 0.8179 9.6232 1.3015 24 6 4.1229 2.4860 -0.0652 25 6 5.5999 2.1368 0.1280 26 6 3.9938 3.7338 -0.9412 27 8 4.6676 4.8273 -0.3148 28 6 3.3824 1.3032 -0.7243 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 2.7933 0.8733 1.9947 33 1 1.5723 2.1817 1.9520 34 1 3.2033 2.8933 3.9938 35 1 2.0434 4.0060 3.2290 36 1 5.0005 3.7230 5.3332 37 1 5.9380 5.5879 6.6351 38 1 5.1543 7.8895 6.2582 39 1 3.4268 8.3469 4.5735 40 1 0.7828 9.0939 4.3382 41 1 5.6845 1.2520 0.7590 42 1 6.0558 1.9365 -0.8416 43 1 6.1117 2.9730 0.6043 44 1 4.4418 3.5414 -1.9161 45 1 2.9399 3.9811 -1.0681 46 1 4.6264 5.6535 -0.8156 47 1 3.2547 1.4754 -1.7930 48 1 3.9122 0.3679 -0.5438 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870528431.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:59 Heat of formation + Delta-G solvation = -119.750386 kcal Electronic energy + Delta-G solvation = -30479.464631 eV Core-core repulsion = 26498.669952 eV Total energy + Delta-G solvation = -3980.794679 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.50580 -39.76591 -38.78757 -37.85749 -36.63313 -35.48854 -33.74334 -32.63545 -31.44001 -31.29903 -28.45571 -27.61939 -27.27551 -26.82923 -26.10165 -23.30717 -22.79732 -22.31387 -21.00025 -19.27293 -18.99843 -18.33727 -17.79855 -17.64160 -17.23629 -16.65739 -16.28339 -16.25326 -15.81197 -15.76053 -15.47129 -15.42322 -14.80141 -14.72257 -14.38496 -14.23139 -14.09088 -13.58462 -13.50505 -13.38102 -13.33377 -13.01353 -12.93769 -12.86017 -12.73871 -12.58106 -12.47522 -12.45714 -12.14858 -12.10814 -11.86665 -11.56715 -11.31757 -11.17999 -11.02563 -10.75667 -10.65561 -10.26905 -9.41725 -9.20509 -9.13592 -8.56990 -6.26503 0.99902 1.14597 1.34130 1.47923 1.51977 2.02414 2.11446 2.19816 2.77851 2.83184 3.34138 3.46154 3.62957 3.80751 3.98881 4.07077 4.16470 4.22502 4.35567 4.40374 4.45362 4.47237 4.51328 4.58745 4.60332 4.63817 4.69383 4.71784 4.75310 4.79016 4.82236 4.88993 4.93153 4.94054 5.05472 5.10700 5.21541 5.37968 5.39719 5.57042 5.69477 5.79699 6.06305 6.19507 6.20548 6.23237 6.44374 6.72821 6.78314 7.01078 7.02289 7.13732 7.66080 8.39027 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010690 B = 0.004601 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.650671 B = 6084.115576 C = 6952.548341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.385 6.385 3 C 0.082 3.918 4 H 0.086 0.914 5 C 0.076 3.924 6 N -0.619 5.619 7 C 0.525 3.475 8 O -0.512 6.512 9 C -0.063 4.063 10 C -0.184 4.184 11 C -0.093 4.093 12 C -0.242 4.242 13 C -0.118 4.118 14 C -0.193 4.193 15 C 0.099 3.901 16 C -0.472 4.472 17 H 0.068 0.932 18 C 0.034 3.966 19 N -0.829 5.829 20 Si 0.973 3.027 21 H -0.261 1.261 22 H -0.262 1.262 23 H -0.269 1.269 24 C 0.159 3.841 25 C -0.144 4.144 26 C 0.065 3.935 27 O -0.553 6.553 28 C -0.106 4.106 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.285 0.715 41 H 0.056 0.944 42 H 0.081 0.919 43 H 0.040 0.960 44 H 0.073 0.927 45 H 0.037 0.963 46 H 0.369 0.631 47 H 0.109 0.891 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.177 -14.885 -12.491 19.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.303 6.303 3 C 0.023 3.977 4 H 0.104 0.896 5 C -0.047 4.047 6 N -0.357 5.357 7 C 0.313 3.687 8 O -0.385 6.385 9 C -0.102 4.102 10 C -0.185 4.185 11 C -0.112 4.112 12 C -0.261 4.261 13 C -0.136 4.136 14 C -0.212 4.212 15 C 0.097 3.903 16 C -0.502 4.502 17 H 0.086 0.914 18 C -0.180 4.180 19 N -0.455 5.455 20 Si 0.795 3.205 21 H -0.185 1.185 22 H -0.187 1.187 23 H -0.194 1.194 24 C 0.075 3.925 25 C -0.202 4.202 26 C -0.014 4.014 27 O -0.357 6.357 28 C -0.144 4.144 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.121 0.879 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.104 0.896 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.100 0.900 43 H 0.059 0.941 44 H 0.091 0.909 45 H 0.055 0.945 46 H 0.216 0.784 47 H 0.128 0.872 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.550 -14.832 -11.993 19.244 hybrid contribution -0.705 1.451 -0.487 1.685 sum -3.256 -13.381 -12.480 18.585 Atomic orbital electron populations 1.23044 0.79356 1.04149 1.00920 1.87881 1.21453 1.26189 1.94755 1.23212 0.95215 0.85465 0.93759 0.89637 1.22864 0.90635 0.92177 0.99025 1.48527 1.36401 1.32387 1.18420 1.20571 0.84039 0.78978 0.85065 1.90725 1.30652 1.41262 1.75858 1.20212 0.99884 0.97566 0.92573 1.19521 1.03788 0.93518 1.01714 1.20680 0.96189 0.97892 0.96388 1.20677 1.06383 0.93082 1.06007 1.20939 0.97657 0.96610 0.98439 1.21342 0.99668 0.98993 1.01207 1.17695 0.90784 0.90717 0.91125 1.19572 1.14587 1.07824 1.08184 0.91402 1.26687 0.97427 0.95227 0.98654 1.69889 1.33200 1.16612 1.25829 0.85298 0.78007 0.78689 0.78545 1.18493 1.18688 1.19420 1.21158 0.94199 0.93871 0.83304 1.21966 0.94890 1.00794 1.02514 1.22685 0.95711 0.87651 0.95367 1.87126 1.77453 1.20946 1.50212 1.22731 0.93743 0.97080 1.00813 0.93574 0.92861 0.87910 0.90204 0.90473 0.88686 0.89615 0.87226 0.86878 0.87726 0.88241 0.90464 0.92531 0.90006 0.94096 0.90896 0.94482 0.78423 0.87228 0.88159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.85 113.37 1.23 1.50 16 2 O -0.38 -6.98 10.51 -148.98 -1.57 -8.54 16 3 C 0.08 1.57 3.56 32.07 0.11 1.68 16 4 H 0.09 1.54 7.83 -2.39 -0.02 1.52 16 5 C 0.08 1.84 6.44 86.93 0.56 2.40 16 6 N -0.62 -19.44 2.82 -764.85 -2.16 -21.59 16 7 C 0.52 21.66 6.97 87.65 0.61 22.27 16 8 O -0.51 -25.36 11.72 20.61 0.24 -25.12 16 9 C -0.06 -2.61 4.18 29.10 0.12 -2.49 16 10 C -0.18 -9.26 4.43 -19.41 -0.09 -9.35 16 11 C -0.09 -4.44 9.66 22.22 0.21 -4.23 16 12 C -0.24 -11.54 10.05 22.46 0.23 -11.31 16 13 C -0.12 -6.02 10.02 22.22 0.22 -5.80 16 14 C -0.19 -10.93 8.69 22.73 0.20 -10.73 16 15 C 0.10 5.58 5.58 -21.29 -0.12 5.46 16 16 C -0.47 -25.92 8.16 23.46 0.19 -25.73 16 17 H 0.07 3.69 6.66 -2.91 -0.02 3.67 16 18 C 0.03 1.75 5.18 85.26 0.44 2.19 16 19 N -0.83 -44.54 10.87 21.83 0.24 -44.30 16 20 Si 0.97 39.30 29.59 68.60 2.03 41.33 16 21 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 22 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 23 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 24 C 0.16 4.14 0.79 3.95 0.00 4.15 16 25 C -0.14 -3.90 8.27 71.98 0.60 -3.30 16 26 C 0.06 1.72 5.96 71.98 0.43 2.15 16 27 O -0.55 -19.90 9.24 -125.32 -1.16 -21.06 16 28 C -0.11 -1.89 5.76 31.78 0.18 -1.71 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 0.58 8.12 -2.39 -0.02 0.56 16 31 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.08 1.86 7.48 -2.39 -0.02 1.84 16 34 H 0.09 3.36 8.06 -2.39 -0.02 3.35 16 35 H 0.09 3.59 6.77 -2.38 -0.02 3.58 16 36 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 37 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 38 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 39 H 0.10 5.88 6.12 -2.91 -0.02 5.86 16 40 H 0.28 13.85 8.30 -92.71 -0.77 13.08 16 41 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 43 H 0.04 1.48 6.45 -2.39 -0.02 1.46 16 44 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.37 10.91 9.12 -74.06 -0.68 10.24 16 47 H 0.11 1.43 7.83 -2.39 -0.02 1.41 16 48 H 0.10 1.67 7.86 -2.39 -0.02 1.65 16 Total: -1.00 -73.04 382.34 3.05 -69.98 By element: Atomic # 1 Polarization: 41.86 SS G_CDS: 0.29 Total: 42.15 kcal Atomic # 6 Polarization: -37.98 SS G_CDS: 5.14 Total: -32.84 kcal Atomic # 7 Polarization: -63.97 SS G_CDS: -1.92 Total: -65.89 kcal Atomic # 8 Polarization: -52.24 SS G_CDS: -2.48 Total: -54.72 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -73.04 3.05 -69.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870528431.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.767 kcal (2) G-P(sol) polarization free energy of solvation -73.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds