Wall clock time and date at job start Tue Mar 31 2020 18:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47001 * 2 1 4 4 O 1.42894 * 109.49852 * 64.93396 * 3 2 1 5 5 C 1.53046 * 109.49486 * 185.00194 * 3 2 1 6 6 C 1.53035 * 109.53489 * 181.31764 * 5 3 2 7 7 C 1.53197 * 109.31063 * 298.62804 * 6 5 3 8 8 N 1.46924 * 108.77292 * 54.64201 * 7 6 5 9 9 C 1.34776 * 120.63190 * 126.41632 * 8 7 6 10 10 O 1.21283 * 120.00136 * 180.02562 * 9 8 7 11 11 C 1.50699 * 119.99766 * 359.97438 * 9 8 7 12 12 C 1.50699 * 109.46918 * 180.02562 * 11 9 8 13 13 C 1.38323 * 119.97032 * 89.99992 * 12 11 9 14 14 C 1.38278 * 120.14323 * 180.02562 * 13 12 11 15 15 C 1.38124 * 120.06845 * 0.02562 * 14 13 12 16 16 C 1.38851 * 119.92784 * 359.97438 * 15 14 13 17 17 O 1.35753 * 120.06762 * 179.97438 * 16 15 14 18 18 C 1.34834 * 117.00048 * 354.46874 * 17 16 15 19 19 H 1.07995 * 119.99838 * 5.05502 * 18 17 16 20 20 C 1.38657 * 120.00010 * 185.05700 * 18 17 16 21 21 N 1.31560 * 119.99962 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99815 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47604 * 59.99511 * 22 20 18 24 24 H 1.48497 * 109.47248 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46981 * 299.99418 * 22 20 18 26 26 C 1.38084 * 119.96574 * 269.72974 * 12 11 9 27 27 C 1.46922 * 118.73833 * 306.38642 * 8 7 6 28 28 H 1.09003 * 109.47424 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46714 * 60.00146 * 1 2 3 30 30 H 1.09000 * 109.46946 * 300.00551 * 1 2 3 31 31 H 1.09004 * 109.46714 * 119.99854 * 2 1 3 32 32 H 1.08996 * 109.47184 * 239.99909 * 2 1 3 33 33 H 0.96698 * 114.00309 * 299.99601 * 4 3 2 34 34 H 1.09004 * 109.45542 * 301.33089 * 5 3 2 35 35 H 1.08997 * 109.45855 * 61.30777 * 5 3 2 36 36 H 1.08996 * 109.50386 * 58.58216 * 6 5 3 37 37 H 1.09001 * 109.49944 * 178.65105 * 6 5 3 38 38 H 1.09001 * 109.58539 * 174.42861 * 7 6 5 39 39 H 1.08997 * 109.58713 * 294.70466 * 7 6 5 40 40 H 1.08996 * 109.47686 * 300.00405 * 11 9 8 41 41 H 1.09004 * 109.46941 * 60.00855 * 11 9 8 42 42 H 1.08004 * 119.92624 * 0.02562 * 13 12 11 43 43 H 1.08005 * 119.96570 * 180.02562 * 14 13 12 44 44 H 1.07999 * 120.03347 * 180.02562 * 15 14 13 45 45 H 0.96993 * 119.99786 * 180.02562 * 21 20 18 46 46 H 1.08003 * 120.03292 * 359.97438 * 26 12 11 47 47 H 1.08998 * 109.58716 * 293.82452 * 27 8 7 48 48 H 1.09000 * 109.59031 * 173.39864 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.6609 2.0824 1.2201 5 6 3.5653 1.4450 -0.1258 6 6 4.0791 2.8862 -0.0929 7 6 3.4949 3.6595 -1.2793 8 7 2.0309 3.5401 -1.2468 9 6 1.2514 4.6392 -1.2736 10 8 0.0441 4.5274 -1.2458 11 6 1.8802 6.0074 -1.3368 12 6 0.7987 7.0567 -1.3553 13 6 0.3257 7.5827 -0.1667 14 6 -0.6668 8.5453 -0.1795 15 6 -1.1896 8.9844 -1.3803 16 6 -0.7170 8.4584 -2.5752 17 8 -1.2291 8.8874 -3.7570 18 6 -2.2720 9.7400 -3.6986 19 1 -2.6102 10.1149 -2.7440 20 6 -2.9103 10.1354 -4.8644 21 7 -2.4980 9.6791 -6.0273 22 14 -4.3546 11.3171 -4.7836 23 1 -3.9161 12.5935 -4.1640 24 1 -4.8562 11.5804 -6.1562 25 1 -5.4398 10.7174 -3.9662 26 6 0.2849 7.4963 -2.5593 27 6 1.4327 2.1995 -1.1853 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 0.7056 2.1179 1.3654 34 1 3.9989 0.8859 0.7034 35 1 3.8527 0.9786 -1.0681 36 1 3.7708 3.3612 0.8384 37 1 5.1671 2.8861 -0.1584 38 1 3.7776 4.7097 -1.2057 39 1 3.8772 3.2427 -2.2110 40 1 2.5153 6.1561 -0.4636 41 1 2.4819 6.0892 -2.2420 42 1 0.7326 7.2407 0.7736 43 1 -1.0337 8.9543 0.7503 44 1 -1.9645 9.7365 -1.3897 45 1 -2.9442 9.9559 -6.8428 46 1 0.6579 7.0888 -3.4873 47 1 1.6448 1.6620 -2.1095 48 1 0.3546 2.2863 -1.0498 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870680707.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:26 Heat of formation + Delta-G solvation = -119.503260 kcal Electronic energy + Delta-G solvation = -28908.449524 eV Core-core repulsion = 24927.665561 eV Total energy + Delta-G solvation = -3980.783962 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.59389 -40.72911 -39.57404 -38.14136 -36.70760 -34.35388 -34.03501 -33.45164 -33.23348 -30.96107 -30.22448 -28.61641 -27.31982 -26.17897 -25.22941 -23.29195 -22.80102 -22.37723 -21.17042 -20.26194 -19.39043 -18.72437 -18.23580 -17.80639 -16.89039 -16.65972 -16.61852 -16.27334 -16.10491 -15.79449 -15.48154 -15.46046 -15.17562 -14.82927 -14.64877 -14.37793 -14.31403 -13.99355 -13.91536 -13.60118 -13.56285 -13.33453 -12.98089 -12.93193 -12.81736 -12.50634 -12.45219 -12.36699 -12.23029 -12.13606 -11.95358 -11.89324 -11.88874 -11.28646 -11.21189 -11.06240 -10.82003 -10.71152 -9.64121 -9.52945 -8.98319 -8.47238 -6.15883 0.51354 0.75129 1.33333 1.44904 1.50150 1.65469 2.02056 2.17801 2.83086 3.14287 3.30157 3.43641 3.55662 3.72540 3.81466 3.86360 3.97200 4.09017 4.11396 4.19434 4.27723 4.30820 4.38573 4.43362 4.50441 4.57524 4.58668 4.64208 4.69834 4.72720 4.82245 4.87976 4.91482 5.03321 5.06261 5.08358 5.12303 5.18313 5.20854 5.29810 5.32445 5.48540 5.59170 5.64452 5.72039 5.74982 6.02403 6.21464 6.40522 6.72190 6.97151 7.21930 7.78602 8.76275 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019987 B = 0.002419 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.590605 B =11573.621950 C =11879.313913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.141 4.141 3 C 0.122 3.878 4 O -0.566 6.566 5 C -0.106 4.106 6 C -0.127 4.127 7 C 0.095 3.905 8 N -0.604 5.604 9 C 0.515 3.485 10 O -0.581 6.581 11 C -0.089 4.089 12 C -0.024 4.024 13 C -0.181 4.181 14 C -0.072 4.072 15 C -0.247 4.247 16 C 0.113 3.887 17 O -0.234 6.234 18 C -0.415 4.415 19 H 0.100 0.900 20 C -0.024 4.024 21 N -0.922 5.922 22 Si 1.020 2.980 23 H -0.255 1.255 24 H -0.270 1.270 25 H -0.260 1.260 26 C -0.192 4.192 27 C 0.080 3.920 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.378 0.622 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.059 0.941 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.137 0.863 41 H 0.120 0.880 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.119 0.881 45 H 0.273 0.727 46 H 0.105 0.895 47 H 0.083 0.917 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.384 -18.379 14.405 27.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.179 4.179 3 C 0.081 3.919 4 O -0.373 6.373 5 C -0.144 4.144 6 C -0.165 4.165 7 C -0.026 4.026 8 N -0.337 5.337 9 C 0.304 3.696 10 O -0.461 6.461 11 C -0.128 4.128 12 C -0.025 4.025 13 C -0.199 4.199 14 C -0.090 4.090 15 C -0.266 4.266 16 C 0.063 3.937 17 O -0.141 6.141 18 C -0.491 4.491 19 H 0.117 0.883 20 C -0.221 4.221 21 N -0.561 5.561 22 Si 0.838 3.162 23 H -0.179 1.179 24 H -0.194 1.194 25 H -0.184 1.184 26 C -0.211 4.211 27 C -0.042 4.042 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.226 0.774 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.105 0.895 40 H 0.155 0.845 41 H 0.138 0.862 42 H 0.161 0.839 43 H 0.163 0.837 44 H 0.137 0.863 45 H 0.082 0.918 46 H 0.124 0.876 47 H 0.102 0.898 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 15.433 -18.413 14.023 27.818 hybrid contribution -1.727 0.496 -0.559 1.882 sum 13.706 -17.916 13.464 26.270 Atomic orbital electron populations 1.21886 0.95889 1.02682 1.01616 1.22128 0.96205 0.95538 1.04012 1.21666 0.96265 0.90953 0.83005 1.86488 1.28879 1.81529 1.40377 1.21588 0.91227 0.97866 1.03683 1.21820 1.01502 0.95190 0.98012 1.22127 0.77277 1.03304 0.99925 1.48049 1.07916 1.05077 1.72654 1.20890 0.86645 0.86976 0.75053 1.90721 1.16634 1.87348 1.51380 1.20709 0.96731 0.88218 1.07183 1.19177 0.96292 0.95239 0.91770 1.20932 1.00809 1.00615 0.97582 1.21122 0.95223 0.95889 0.96794 1.21294 1.06168 1.06333 0.92805 1.19851 0.93779 0.93522 0.86519 1.83934 1.45429 1.58031 1.26684 1.21794 1.08421 1.23063 0.95870 0.88261 1.26619 1.01811 1.00259 0.93423 1.70185 1.42439 1.44854 0.98607 0.84642 0.75828 0.77318 0.78366 1.17886 1.19415 1.18418 1.20188 1.01254 1.01089 0.98617 1.22432 0.99057 0.83015 0.99745 0.91271 0.93251 0.92800 0.90285 0.89517 0.77382 0.90458 0.88781 0.92229 0.88129 0.88011 0.89465 0.84529 0.86234 0.83922 0.83676 0.86333 0.91833 0.87647 0.89845 0.90911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.22 71.98 0.66 -1.51 16 2 C -0.14 -1.62 5.23 30.60 0.16 -1.46 16 3 C 0.12 1.81 0.75 -10.71 -0.01 1.80 16 4 O -0.57 -10.73 12.17 -148.98 -1.81 -12.54 16 5 C -0.11 -1.15 4.92 30.62 0.15 -1.00 16 6 C -0.13 -1.39 5.94 30.67 0.18 -1.20 16 7 C 0.10 1.22 6.34 86.36 0.55 1.77 16 8 N -0.60 -12.84 2.91 -818.91 -2.39 -15.22 16 9 C 0.51 15.24 7.69 87.66 0.67 15.92 16 10 O -0.58 -23.54 15.45 -3.04 -0.05 -23.59 16 11 C -0.09 -2.29 4.18 29.10 0.12 -2.17 16 12 C -0.02 -0.89 4.37 -19.88 -0.09 -0.97 16 13 C -0.18 -6.27 9.70 22.30 0.22 -6.05 16 14 C -0.07 -2.73 10.04 22.25 0.22 -2.51 16 15 C -0.25 -11.66 9.17 22.39 0.21 -11.46 16 16 C 0.11 6.10 6.65 22.58 0.15 6.25 16 17 O -0.23 -14.91 9.76 -22.82 -0.22 -15.14 16 18 C -0.42 -25.44 9.49 67.92 0.64 -24.79 16 19 H 0.10 5.60 5.20 -2.91 -0.02 5.58 16 20 C -0.02 -1.42 5.49 84.83 0.47 -0.96 16 21 N -0.92 -58.64 13.67 21.61 0.30 -58.35 16 22 Si 1.02 44.54 29.55 68.60 2.03 46.57 16 23 H -0.25 -10.35 7.11 99.48 0.71 -9.65 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 25 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 26 C -0.19 -8.95 9.65 22.39 0.22 -8.74 16 27 C 0.08 1.58 4.67 86.36 0.40 1.98 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.05 0.79 6.48 -2.38 -0.02 0.77 16 30 H 0.05 0.74 6.89 -2.39 -0.02 0.72 16 31 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.38 6.59 7.53 -74.06 -0.56 6.03 16 34 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.06 0.91 7.61 -2.39 -0.02 0.89 16 37 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.10 1.05 5.93 -2.39 -0.01 1.03 16 39 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.14 2.46 7.63 -2.39 -0.02 2.44 16 41 H 0.12 2.58 7.88 -2.38 -0.02 2.56 16 42 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 43 H 0.15 4.33 8.06 -2.91 -0.02 4.30 16 44 H 0.12 5.63 5.64 -2.91 -0.02 5.61 16 45 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 46 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 47 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 48 H 0.07 1.83 5.57 -2.39 -0.01 1.82 16 Total: -1.00 -84.64 382.32 3.21 -81.44 By element: Atomic # 1 Polarization: 31.52 SS G_CDS: 0.42 Total: 31.94 kcal Atomic # 6 Polarization: -40.04 SS G_CDS: 4.93 Total: -35.11 kcal Atomic # 7 Polarization: -71.48 SS G_CDS: -2.09 Total: -73.57 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -2.08 Total: -51.27 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -84.64 3.21 -81.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870680707.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.065 kcal (2) G-P(sol) polarization free energy of solvation -84.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds