Wall clock time and date at job start Tue Mar 31 2020 18:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46915 * 2 1 4 4 O 1.42894 * 109.49526 * 299.99908 * 3 2 1 5 5 C 1.53038 * 109.49734 * 179.97438 * 3 2 1 6 6 C 1.53035 * 109.53912 * 178.68569 * 5 3 2 7 7 C 1.53192 * 109.31421 * 61.36211 * 6 5 3 8 8 N 1.46925 * 108.77719 * 305.36672 * 7 6 5 9 9 C 1.34780 * 120.62984 * 233.61239 * 8 7 6 10 10 O 1.21284 * 119.99279 * 179.97438 * 9 8 7 11 11 C 1.50697 * 120.00369 * 359.97438 * 9 8 7 12 12 C 1.50693 * 109.47195 * 180.02562 * 11 9 8 13 13 C 1.38304 * 119.92819 * 269.72216 * 12 11 9 14 14 C 1.38100 * 120.07128 * 179.72646 * 13 12 11 15 15 C 1.38884 * 119.92524 * 0.57198 * 14 13 12 16 16 O 1.35752 * 120.06822 * 179.68449 * 15 14 13 17 17 C 1.34828 * 117.00299 * 174.48900 * 16 15 14 18 18 H 1.08004 * 119.99742 * 5.05541 * 17 16 15 19 19 C 1.38646 * 120.00254 * 185.05768 * 17 16 15 20 20 N 1.31560 * 120.00160 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99904 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47346 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47185 * 120.00089 * 21 19 17 24 24 H 1.48505 * 109.47291 * 239.99735 * 21 19 17 25 25 C 1.38874 * 119.86399 * 359.70282 * 15 14 13 26 26 C 1.38103 * 119.93482 * 0.02562 * 25 15 14 27 27 C 1.46933 * 118.76326 * 53.58631 * 8 7 6 28 28 H 1.08993 * 109.47731 * 300.00062 * 1 2 3 29 29 H 1.09006 * 109.47011 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47000 * 60.00663 * 1 2 3 31 31 H 1.09005 * 109.46649 * 119.99655 * 2 1 3 32 32 H 1.08993 * 109.47014 * 239.99730 * 2 1 3 33 33 H 0.96698 * 114.00480 * 60.00380 * 4 3 2 34 34 H 1.09011 * 109.45507 * 298.70274 * 5 3 2 35 35 H 1.09001 * 109.46327 * 58.67182 * 5 3 2 36 36 H 1.08997 * 109.49985 * 181.31554 * 6 5 3 37 37 H 1.09004 * 109.49807 * 301.37937 * 6 5 3 38 38 H 1.08991 * 109.58750 * 65.15748 * 7 6 5 39 39 H 1.09003 * 109.58827 * 185.43676 * 7 6 5 40 40 H 1.09006 * 109.46890 * 300.00629 * 11 9 8 41 41 H 1.09003 * 109.47150 * 59.99698 * 11 9 8 42 42 H 1.07998 * 119.96541 * 359.97438 * 13 12 11 43 43 H 1.07998 * 120.03818 * 180.27567 * 14 13 12 44 44 H 0.96999 * 120.00220 * 179.97438 * 20 19 17 45 45 H 1.08001 * 120.03714 * 180.02562 * 25 15 14 46 46 H 1.07997 * 119.97283 * 179.97438 * 26 25 15 47 47 H 1.08999 * 109.61301 * 186.64156 * 27 8 7 48 48 H 1.09000 * 109.56207 * 66.21629 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5639 2.1166 -1.1666 5 6 3.5704 1.4433 0.0006 6 6 4.0815 2.8854 -0.0324 7 6 3.5971 3.6235 1.2195 8 7 2.1352 3.5032 1.3034 9 6 1.3617 4.6003 1.4249 10 8 0.1561 4.4877 1.4928 11 6 1.9950 5.9668 1.4764 12 6 0.9200 7.0138 1.6140 13 6 0.3567 7.5771 0.4835 14 6 -0.6327 8.5328 0.6061 15 6 -1.0535 8.9366 1.8665 16 8 -2.0214 9.8804 1.9905 17 6 -2.4635 10.1439 3.2367 18 1 -1.9929 9.6733 4.0873 19 6 -3.5222 11.0188 3.4261 20 7 -4.0952 11.5923 2.3900 21 14 -4.1352 11.3832 5.1527 22 1 -3.3288 10.6169 6.1363 23 1 -4.0030 12.8364 5.4285 24 1 -5.5616 10.9857 5.2658 25 6 -0.4819 8.3731 2.9999 26 6 0.5031 7.4138 2.8706 27 6 1.5318 2.1645 1.2519 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 -0.8901 31 1 1.8933 -0.5138 0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 0.6000 2.1551 -1.2328 34 1 3.9333 0.9499 0.9024 35 1 3.9342 0.9090 -0.8770 36 1 5.1712 2.8847 -0.0555 37 1 3.6991 3.3866 -0.9216 38 1 4.0517 3.1788 2.1047 39 1 3.8762 4.6752 1.1546 40 1 2.6684 6.0232 2.3317 41 1 2.5575 6.1414 0.5592 42 1 0.6880 7.2665 -0.4963 43 1 -1.0754 8.9691 -0.2771 44 1 -4.8361 12.2042 2.5225 45 1 -0.8074 8.6848 3.9814 46 1 0.9483 6.9756 3.7515 47 1 0.4464 2.2539 1.2069 48 1 1.8175 1.6009 2.1401 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870682659.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:31 Heat of formation + Delta-G solvation = -95.634135 kcal Electronic energy + Delta-G solvation = -28758.172153 eV Core-core repulsion = 24778.423234 eV Total energy + Delta-G solvation = -3979.748919 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.64616 -39.13009 -38.39171 -36.44500 -35.84554 -33.29007 -32.54472 -32.41198 -31.39669 -30.08567 -29.44431 -27.03027 -25.53603 -24.78497 -24.53156 -21.90358 -21.86142 -20.97664 -20.29533 -19.08035 -17.91786 -17.21216 -17.09415 -16.86530 -15.91289 -15.71473 -15.10363 -14.86891 -14.67747 -14.51353 -14.30503 -13.98962 -13.89386 -13.63968 -13.49462 -13.38876 -13.13137 -12.96082 -12.68474 -12.63532 -12.46077 -12.25201 -11.86249 -11.75702 -11.46177 -11.41701 -11.37109 -11.31829 -11.21422 -10.79261 -10.69363 -10.60914 -10.53549 -10.37681 -10.29538 -9.58813 -9.26076 -8.77015 -8.64156 -8.08036 -7.09434 -6.39505 -3.97895 2.31403 2.32361 2.79222 2.97656 3.16059 3.17732 3.22951 3.92547 4.01464 4.19753 4.36051 4.46584 4.56602 4.67228 4.75377 4.81788 4.89797 5.04082 5.10260 5.14390 5.18730 5.28826 5.32159 5.35257 5.39358 5.39738 5.45317 5.48904 5.56550 5.61855 5.69867 5.74641 5.76306 5.79519 5.90185 5.92299 6.03737 6.28289 6.40506 6.48783 6.77253 6.98297 7.12022 7.30645 7.36570 7.42630 7.44136 7.51467 7.90870 8.06148 8.33856 9.06464 9.77753 10.78872 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021789 B = 0.002289 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.726932 B =12227.320081 C =12581.808271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.147 4.147 3 C 0.120 3.880 4 O -0.551 6.551 5 C -0.104 4.104 6 C -0.133 4.133 7 C 0.107 3.893 8 N -0.614 5.614 9 C 0.515 3.485 10 O -0.523 6.523 11 C -0.078 4.078 12 C -0.169 4.169 13 C -0.059 4.059 14 C -0.191 4.191 15 C 0.156 3.844 16 O -0.179 6.179 17 C -0.390 4.390 18 H 0.092 0.908 19 C 0.038 3.962 20 N -0.864 5.864 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.232 4.232 26 C -0.057 4.057 27 C 0.086 3.914 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.376 0.624 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.116 0.884 44 H 0.269 0.731 45 H 0.126 0.874 46 H 0.103 0.897 47 H 0.097 0.903 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.358 -21.922 -3.130 28.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.185 4.185 3 C 0.078 3.922 4 O -0.358 6.358 5 C -0.141 4.141 6 C -0.171 4.171 7 C -0.016 4.016 8 N -0.349 5.349 9 C 0.304 3.696 10 O -0.397 6.397 11 C -0.118 4.118 12 C -0.170 4.170 13 C -0.077 4.077 14 C -0.210 4.210 15 C 0.103 3.897 16 O -0.083 6.083 17 C -0.466 4.466 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.499 5.499 21 Si 0.765 3.235 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.251 4.251 26 C -0.075 4.075 27 C -0.037 4.037 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.225 0.775 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.126 0.874 43 H 0.134 0.866 44 H 0.079 0.921 45 H 0.144 0.856 46 H 0.121 0.879 47 H 0.115 0.885 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 17.009 -21.577 -3.390 27.684 hybrid contribution -0.844 -0.087 1.047 1.348 sum 16.165 -21.664 -2.343 27.132 Atomic orbital electron populations 1.21874 0.95299 1.02430 1.02393 1.22164 0.96804 0.96540 1.03035 1.21560 0.94744 0.90444 0.85446 1.86512 1.26946 1.79311 1.42994 1.21496 0.92489 0.97578 1.02584 1.21854 1.00404 0.95791 0.99081 1.21740 0.80033 1.01973 0.97882 1.48035 1.06732 1.05827 1.74349 1.21027 0.87269 0.85983 0.75300 1.90720 1.14380 1.86388 1.48255 1.20428 0.97729 0.90137 1.03485 1.18651 1.02822 1.01814 0.93691 1.20400 0.95227 0.95310 0.96810 1.20154 1.02486 1.03034 0.95346 1.19376 0.88961 0.88081 0.93300 1.83977 1.45911 1.47047 1.31352 1.21371 1.15826 1.27464 0.81932 0.89067 1.25281 0.95560 0.96104 0.99649 1.70052 1.22397 1.27754 1.29724 0.85653 0.78901 0.78507 0.80390 1.19129 1.20185 1.20177 1.21098 1.02037 1.02989 0.99015 1.20498 0.95803 0.95642 0.95592 1.22269 1.00523 0.83515 0.97439 0.92000 0.92131 0.92348 0.90960 0.90888 0.77514 0.90699 0.91042 0.90800 0.90303 0.91638 0.89309 0.89189 0.89010 0.87414 0.86568 0.92145 0.85621 0.87919 0.88476 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 9.26 37.16 0.34 -0.75 16 2 C -0.15 -0.95 5.21 -26.73 -0.14 -1.09 16 3 C 0.12 0.97 0.75 -90.50 -0.07 0.90 16 4 O -0.55 -5.58 12.13 -35.23 -0.43 -6.01 16 5 C -0.10 -0.71 4.92 -26.69 -0.13 -0.84 16 6 C -0.13 -0.94 5.94 -26.61 -0.16 -1.09 16 7 C 0.11 0.82 6.34 -3.71 -0.02 0.79 16 8 N -0.61 -6.73 2.92 -172.77 -0.50 -7.24 16 9 C 0.52 7.55 7.69 -10.99 -0.08 7.47 16 10 O -0.52 -10.05 15.45 5.55 0.09 -9.97 16 11 C -0.08 -1.04 4.18 -29.04 -0.12 -1.16 16 12 C -0.17 -3.05 4.38 -104.58 -0.46 -3.50 16 13 C -0.06 -1.13 9.69 -39.61 -0.38 -1.52 16 14 C -0.19 -4.29 9.99 -39.39 -0.39 -4.68 16 15 C 0.16 3.97 6.65 -39.11 -0.26 3.71 16 16 O -0.18 -5.30 9.76 0.05 0.00 -5.30 16 17 C -0.39 -11.24 9.49 30.88 0.29 -10.94 16 18 H 0.09 2.45 5.20 -52.48 -0.27 2.18 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -25.95 13.67 55.48 0.76 -25.19 16 21 Si 0.94 21.08 29.55 -169.99 -5.02 16.06 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 23 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 C -0.23 -5.33 9.17 -39.40 -0.36 -5.69 16 26 C -0.06 -1.12 9.69 -39.61 -0.38 -1.50 16 27 C 0.09 0.84 4.83 -3.71 -0.02 0.82 16 28 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.39 6.78 -51.93 -0.35 0.04 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.38 3.36 7.34 45.56 0.33 3.69 16 34 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.72 7.61 -51.93 -0.40 0.32 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 0.60 5.95 -51.93 -0.31 0.30 16 40 H 0.09 0.99 7.89 -51.93 -0.41 0.58 16 41 H 0.09 1.03 7.64 -51.93 -0.40 0.63 16 42 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 43 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 44 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 46 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 47 H 0.10 1.14 5.62 -51.93 -0.29 0.85 16 48 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 382.31 15.07 5.76 5.76 Total: -1.00 -35.17 382.31 -8.31 -43.47 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -6.52 Total: 6.52 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -2.44 Total: -18.10 kcal Atomic # 7 Polarization: -32.68 SS G_CDS: 0.25 Total: -32.43 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.34 Total: -21.28 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.17 -8.31 -43.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870682659.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.159 kcal (2) G-P(sol) polarization free energy of solvation -35.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds