Wall clock time and date at job start Tue Mar 31 2020 18:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46915 * 2 1 4 4 O 1.42894 * 109.49526 * 299.99908 * 3 2 1 5 5 C 1.53038 * 109.49734 * 179.97438 * 3 2 1 6 6 C 1.53035 * 109.53912 * 178.68569 * 5 3 2 7 7 C 1.53192 * 109.31421 * 61.36211 * 6 5 3 8 8 N 1.46925 * 108.77719 * 305.36672 * 7 6 5 9 9 C 1.34780 * 120.62984 * 233.61239 * 8 7 6 10 10 O 1.21284 * 119.99279 * 179.97438 * 9 8 7 11 11 C 1.50697 * 120.00369 * 359.97438 * 9 8 7 12 12 C 1.50693 * 109.47195 * 180.02562 * 11 9 8 13 13 C 1.38304 * 119.92819 * 269.72216 * 12 11 9 14 14 C 1.38100 * 120.07128 * 179.72646 * 13 12 11 15 15 C 1.38884 * 119.92524 * 0.57198 * 14 13 12 16 16 O 1.35752 * 120.06822 * 179.68449 * 15 14 13 17 17 C 1.34828 * 117.00299 * 174.48900 * 16 15 14 18 18 H 1.08004 * 119.99742 * 5.05541 * 17 16 15 19 19 C 1.38646 * 120.00254 * 185.05768 * 17 16 15 20 20 N 1.31560 * 120.00160 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99904 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47346 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47185 * 120.00089 * 21 19 17 24 24 H 1.48505 * 109.47291 * 239.99735 * 21 19 17 25 25 C 1.38874 * 119.86399 * 359.70282 * 15 14 13 26 26 C 1.38103 * 119.93482 * 0.02562 * 25 15 14 27 27 C 1.46933 * 118.76326 * 53.58631 * 8 7 6 28 28 H 1.08993 * 109.47731 * 300.00062 * 1 2 3 29 29 H 1.09006 * 109.47011 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47000 * 60.00663 * 1 2 3 31 31 H 1.09005 * 109.46649 * 119.99655 * 2 1 3 32 32 H 1.08993 * 109.47014 * 239.99730 * 2 1 3 33 33 H 0.96698 * 114.00480 * 60.00380 * 4 3 2 34 34 H 1.09011 * 109.45507 * 298.70274 * 5 3 2 35 35 H 1.09001 * 109.46327 * 58.67182 * 5 3 2 36 36 H 1.08997 * 109.49985 * 181.31554 * 6 5 3 37 37 H 1.09004 * 109.49807 * 301.37937 * 6 5 3 38 38 H 1.08991 * 109.58750 * 65.15748 * 7 6 5 39 39 H 1.09003 * 109.58827 * 185.43676 * 7 6 5 40 40 H 1.09006 * 109.46890 * 300.00629 * 11 9 8 41 41 H 1.09003 * 109.47150 * 59.99698 * 11 9 8 42 42 H 1.07998 * 119.96541 * 359.97438 * 13 12 11 43 43 H 1.07998 * 120.03818 * 180.27567 * 14 13 12 44 44 H 0.96999 * 120.00220 * 179.97438 * 20 19 17 45 45 H 1.08001 * 120.03714 * 180.02562 * 25 15 14 46 46 H 1.07997 * 119.97283 * 179.97438 * 26 25 15 47 47 H 1.08999 * 109.61301 * 186.64156 * 27 8 7 48 48 H 1.09000 * 109.56207 * 66.21629 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5639 2.1166 -1.1666 5 6 3.5704 1.4433 0.0006 6 6 4.0815 2.8854 -0.0324 7 6 3.5971 3.6235 1.2195 8 7 2.1352 3.5032 1.3034 9 6 1.3617 4.6003 1.4249 10 8 0.1561 4.4877 1.4928 11 6 1.9950 5.9668 1.4764 12 6 0.9200 7.0138 1.6140 13 6 0.3567 7.5771 0.4835 14 6 -0.6327 8.5328 0.6061 15 6 -1.0535 8.9366 1.8665 16 8 -2.0214 9.8804 1.9905 17 6 -2.4635 10.1439 3.2367 18 1 -1.9929 9.6733 4.0873 19 6 -3.5222 11.0188 3.4261 20 7 -4.0952 11.5923 2.3900 21 14 -4.1352 11.3832 5.1527 22 1 -3.3288 10.6169 6.1363 23 1 -4.0030 12.8364 5.4285 24 1 -5.5616 10.9857 5.2658 25 6 -0.4819 8.3731 2.9999 26 6 0.5031 7.4138 2.8706 27 6 1.5318 2.1645 1.2519 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 -0.8901 31 1 1.8933 -0.5138 0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 0.6000 2.1551 -1.2328 34 1 3.9333 0.9499 0.9024 35 1 3.9342 0.9090 -0.8770 36 1 5.1712 2.8847 -0.0555 37 1 3.6991 3.3866 -0.9216 38 1 4.0517 3.1788 2.1047 39 1 3.8762 4.6752 1.1546 40 1 2.6684 6.0232 2.3317 41 1 2.5575 6.1414 0.5592 42 1 0.6880 7.2665 -0.4963 43 1 -1.0754 8.9691 -0.2771 44 1 -4.8361 12.2042 2.5225 45 1 -0.8074 8.6848 3.9814 46 1 0.9483 6.9756 3.7515 47 1 0.4464 2.2539 1.2069 48 1 1.8175 1.6009 2.1401 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870682659.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:30 Heat of formation + Delta-G solvation = -119.837132 kcal Electronic energy + Delta-G solvation = -28759.221674 eV Core-core repulsion = 24778.423234 eV Total energy + Delta-G solvation = -3980.798440 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.54264 -40.72419 -39.56023 -38.14411 -36.68486 -34.40747 -33.96019 -33.24926 -32.83762 -31.78587 -30.21094 -28.38175 -27.24496 -25.93814 -25.19164 -23.64112 -22.64211 -22.29120 -21.10001 -20.05944 -19.82265 -18.82679 -18.18794 -17.80473 -16.86427 -16.66309 -16.34650 -16.24328 -15.89500 -15.73167 -15.48798 -15.47471 -15.15018 -14.81229 -14.66410 -14.41639 -14.31318 -14.17021 -13.86570 -13.61576 -13.53596 -13.28455 -12.98999 -12.91365 -12.80104 -12.50520 -12.46152 -12.27852 -12.26782 -12.10447 -11.93153 -11.90524 -11.86145 -11.26434 -11.18136 -11.03792 -10.83567 -10.62919 -9.77074 -9.49075 -8.90078 -8.47683 -6.15851 0.60761 0.66744 1.33536 1.42314 1.52530 1.71881 2.07669 2.17325 2.82868 3.15137 3.30772 3.51664 3.58452 3.75596 3.84402 3.89025 4.01928 4.04441 4.13612 4.17818 4.22450 4.30153 4.42369 4.46617 4.53062 4.59385 4.64013 4.66358 4.71893 4.79341 4.84406 4.89528 4.92268 5.05849 5.06160 5.09712 5.14268 5.18905 5.21698 5.29788 5.33121 5.49718 5.55255 5.63705 5.71022 5.77588 6.02697 6.21369 6.46748 6.71861 6.96909 7.29116 7.78332 8.76130 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021789 B = 0.002289 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.726932 B =12227.320081 C =12581.808271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.141 4.141 3 C 0.120 3.880 4 O -0.568 6.568 5 C -0.106 4.106 6 C -0.130 4.130 7 C 0.098 3.902 8 N -0.606 5.606 9 C 0.511 3.489 10 O -0.583 6.583 11 C -0.076 4.076 12 C -0.144 4.144 13 C -0.058 4.058 14 C -0.205 4.205 15 C 0.113 3.887 16 O -0.234 6.234 17 C -0.413 4.413 18 H 0.100 0.900 19 C -0.025 4.025 20 N -0.922 5.922 21 Si 1.020 2.980 22 H -0.252 1.252 23 H -0.265 1.265 24 H -0.269 1.269 25 C -0.242 4.242 26 C -0.060 4.060 27 C 0.082 3.918 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.377 0.623 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.055 0.945 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.142 0.858 43 H 0.112 0.888 44 H 0.273 0.727 45 H 0.118 0.882 46 H 0.138 0.862 47 H 0.071 0.929 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.083 -24.636 -1.928 32.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.179 4.179 3 C 0.079 3.921 4 O -0.375 6.375 5 C -0.143 4.143 6 C -0.168 4.168 7 C -0.024 4.024 8 N -0.338 5.338 9 C 0.301 3.699 10 O -0.462 6.462 11 C -0.115 4.115 12 C -0.145 4.145 13 C -0.076 4.076 14 C -0.224 4.224 15 C 0.062 3.938 16 O -0.140 6.140 17 C -0.489 4.489 18 H 0.117 0.883 19 C -0.222 4.222 20 N -0.560 5.560 21 Si 0.839 3.161 22 H -0.175 1.175 23 H -0.190 1.190 24 H -0.194 1.194 25 C -0.262 4.262 26 C -0.078 4.078 27 C -0.041 4.041 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.225 0.775 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.118 0.882 37 H 0.074 0.926 38 H 0.109 0.891 39 H 0.121 0.879 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.160 0.840 43 H 0.130 0.870 44 H 0.082 0.918 45 H 0.136 0.864 46 H 0.156 0.844 47 H 0.089 0.911 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 20.836 -24.357 -2.208 32.129 hybrid contribution -1.711 0.454 0.527 1.847 sum 19.126 -23.902 -1.682 30.658 Atomic orbital electron populations 1.21873 0.95909 1.02698 1.01599 1.22122 0.96213 0.95631 1.03933 1.21703 0.95822 0.90756 0.83868 1.86496 1.27157 1.79836 1.44044 1.21583 0.91069 0.97868 1.03792 1.21831 1.01885 0.95400 0.97653 1.22101 0.77609 1.03405 0.99269 1.48090 1.08150 1.05311 1.72284 1.21142 0.86669 0.87144 0.74944 1.90720 1.16807 1.87248 1.51473 1.20543 0.96481 0.87703 1.06818 1.19243 1.01949 1.00758 0.92520 1.20832 0.93842 0.93811 0.99125 1.20420 1.03605 1.04051 0.94367 1.19912 0.89481 0.89062 0.95302 1.83938 1.48417 1.49805 1.31880 1.21863 1.16603 1.28117 0.82362 0.88256 1.26623 0.95331 0.95510 1.04725 1.70197 1.23722 1.29472 1.32651 0.84512 0.78364 0.78823 0.74357 1.17526 1.18994 1.19407 1.21219 1.03068 1.03923 0.97948 1.20910 0.94659 0.94389 0.97808 1.22381 0.99198 0.83353 0.99175 0.93105 0.91284 0.92916 0.89390 0.90538 0.77450 0.88542 0.90822 0.88218 0.92633 0.89135 0.87908 0.85506 0.85849 0.84014 0.87029 0.91830 0.86418 0.84431 0.91075 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.26 71.98 0.67 -1.39 16 2 C -0.14 -1.51 5.21 30.60 0.16 -1.35 16 3 C 0.12 1.66 0.75 -10.72 -0.01 1.65 16 4 O -0.57 -10.83 12.13 -148.98 -1.81 -12.64 16 5 C -0.11 -1.04 4.92 30.62 0.15 -0.89 16 6 C -0.13 -1.28 5.94 30.67 0.18 -1.09 16 7 C 0.10 1.01 6.34 86.36 0.55 1.56 16 8 N -0.61 -11.27 2.92 -818.89 -2.39 -13.66 16 9 C 0.51 13.55 7.69 87.66 0.67 14.22 16 10 O -0.58 -21.93 15.45 -3.04 -0.05 -21.98 16 11 C -0.08 -1.69 4.18 29.10 0.12 -1.57 16 12 C -0.14 -4.82 4.38 -19.84 -0.09 -4.90 16 13 C -0.06 -2.15 9.69 22.25 0.22 -1.94 16 14 C -0.21 -9.53 9.99 22.39 0.22 -9.30 16 15 C 0.11 6.02 6.65 22.58 0.15 6.17 16 16 O -0.23 -14.83 9.76 -22.75 -0.22 -15.05 16 17 C -0.41 -25.21 9.49 67.92 0.64 -24.57 16 18 H 0.10 5.60 5.20 -2.91 -0.02 5.59 16 19 C -0.02 -1.47 5.49 84.83 0.47 -1.00 16 20 N -0.92 -58.51 13.67 21.61 0.30 -58.21 16 21 Si 1.02 44.49 29.55 68.60 2.03 46.52 16 22 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 23 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 25 C -0.24 -11.39 9.17 22.39 0.21 -11.18 16 26 C -0.06 -2.23 9.69 22.25 0.22 -2.02 16 27 C 0.08 1.43 4.83 86.36 0.42 1.85 16 28 H 0.05 0.75 6.56 -2.39 -0.02 0.73 16 29 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.05 0.71 6.78 -2.39 -0.02 0.69 16 31 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.38 6.75 7.34 -74.06 -0.54 6.21 16 34 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 35 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.05 0.84 7.61 -2.39 -0.02 0.82 16 38 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.10 0.80 5.95 -2.39 -0.01 0.78 16 40 H 0.13 1.98 7.89 -2.38 -0.02 1.96 16 41 H 0.12 2.05 7.64 -2.39 -0.02 2.04 16 42 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 43 H 0.11 5.12 8.06 -2.91 -0.02 5.09 16 44 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 45 H 0.12 5.59 5.64 -2.91 -0.02 5.57 16 46 H 0.14 4.16 8.06 -2.91 -0.02 4.13 16 47 H 0.07 1.66 5.62 -2.39 -0.01 1.64 16 48 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -84.18 382.31 3.24 -80.94 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: 0.43 Total: 29.85 kcal Atomic # 6 Polarization: -40.70 SS G_CDS: 4.95 Total: -35.76 kcal Atomic # 7 Polarization: -69.78 SS G_CDS: -2.09 Total: -71.87 kcal Atomic # 8 Polarization: -47.60 SS G_CDS: -2.08 Total: -49.67 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -84.18 3.24 -80.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870682659.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.900 kcal (2) G-P(sol) polarization free energy of solvation -84.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds