Wall clock time and date at job start Tue Mar 31 2020 18:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34222 * 117.00278 * 2 1 4 4 O 1.20827 * 120.00159 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00175 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47256 * 180.02562 * 5 3 2 7 7 N 1.46500 * 109.47268 * 180.02562 * 6 5 3 8 8 C 1.36864 * 119.99694 * 269.99776 * 7 6 5 9 9 H 1.07999 * 119.99912 * 139.32588 * 8 7 6 10 10 C 1.39054 * 120.00425 * 319.32043 * 8 7 6 11 11 N 1.31360 * 119.99993 * 161.49848 * 10 8 7 12 12 Si 1.86798 * 119.99659 * 341.49920 * 10 8 7 13 13 H 1.48497 * 109.47076 * 95.26472 * 12 10 8 14 14 H 1.48503 * 109.46811 * 215.26165 * 12 10 8 15 15 H 1.48496 * 109.47422 * 335.26554 * 12 10 8 16 16 C 1.34777 * 119.99829 * 89.99994 * 7 6 5 17 17 O 1.21591 * 120.00255 * 3.69811 * 16 7 6 18 18 C 1.47728 * 119.99690 * 183.70420 * 16 7 6 19 19 C 1.39644 * 120.14965 * 147.77898 * 18 16 7 20 20 C 1.37942 * 119.84677 * 180.02562 * 19 18 16 21 21 C 1.38381 * 120.14999 * 359.97438 * 20 19 18 22 22 C 1.50694 * 119.84697 * 179.97438 * 21 20 19 23 23 C 1.52994 * 109.47694 * 89.99445 * 22 21 20 24 24 C 1.53002 * 109.47335 * 295.00359 * 23 22 21 25 25 C 1.52998 * 109.47484 * 174.99938 * 23 22 21 26 26 C 1.38381 * 120.30269 * 0.25419 * 21 20 19 27 27 C 1.37938 * 120.15097 * 359.48958 * 26 21 20 28 28 H 1.08995 * 109.47377 * 300.00130 * 1 2 3 29 29 H 1.09005 * 109.46743 * 60.00297 * 1 2 3 30 30 H 1.09002 * 109.47083 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46940 * 60.00170 * 5 3 2 32 32 H 1.09001 * 109.47093 * 299.99563 * 5 3 2 33 33 H 1.09003 * 109.47371 * 59.99372 * 6 5 3 34 34 H 1.09001 * 109.47001 * 300.00310 * 6 5 3 35 35 H 0.96999 * 119.99970 * 180.02562 * 11 10 8 36 36 H 1.07995 * 120.07798 * 359.97438 * 19 18 16 37 37 H 1.07999 * 119.92504 * 179.97438 * 20 19 18 38 38 H 1.09002 * 109.46822 * 329.99063 * 22 21 20 39 39 H 1.09004 * 109.47104 * 210.00158 * 22 21 20 40 40 H 1.09002 * 109.46836 * 54.99938 * 23 22 21 41 41 H 1.08995 * 109.47429 * 179.97438 * 24 23 22 42 42 H 1.09002 * 109.46814 * 299.99592 * 24 23 22 43 43 H 1.08999 * 109.47026 * 59.99056 * 24 23 22 44 44 H 1.08995 * 109.47085 * 180.02562 * 25 23 22 45 45 H 1.08999 * 109.47087 * 300.00274 * 25 23 22 46 46 H 1.09002 * 109.47085 * 60.00152 * 25 23 22 47 47 H 1.08000 * 119.91941 * 179.74939 * 26 21 20 48 48 H 1.08001 * 120.07381 * 180.26028 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 6 4.0002 2.7420 0.0011 7 7 5.4632 2.8186 0.0011 8 6 6.1466 2.8540 1.1863 9 1 7.0616 2.2915 1.2991 10 6 5.6629 3.6143 2.2454 11 7 6.0840 3.3810 3.4676 12 14 4.4144 4.9675 1.9300 13 1 3.0448 4.4395 2.1546 14 1 4.6667 6.0996 2.8573 15 1 4.5392 5.4391 0.5274 16 6 6.1361 2.8543 -1.1662 17 8 5.5272 2.8908 -2.2181 18 6 7.6133 2.8489 -1.1676 19 6 8.3115 2.2363 -2.2103 20 6 9.6909 2.2345 -2.2050 21 6 10.3828 2.8384 -1.1699 22 6 11.8897 2.8319 -1.1707 23 6 12.4048 4.0740 -1.9004 24 6 11.9989 4.0049 -3.3740 25 6 13.9299 4.1326 -1.7937 26 6 9.6972 3.4432 -0.1311 27 6 8.3179 3.4570 -0.1264 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.9564 0.7805 -0.8892 32 1 3.9557 0.7809 0.8909 33 1 3.6101 3.2360 0.8910 34 1 3.6108 3.2363 -0.8889 35 1 5.7463 3.9111 4.2064 36 1 7.7728 1.7642 -3.0185 37 1 10.2322 1.7607 -3.0106 38 1 12.2489 1.9369 -1.6788 39 1 12.2536 2.8370 -0.1432 40 1 11.9743 4.9667 -1.4466 41 1 12.3655 4.8900 -3.8938 42 1 12.4295 3.1122 -3.8279 43 1 10.9124 3.9631 -3.4500 44 1 14.2968 5.0178 -2.3132 45 1 14.2190 4.1819 -0.7439 46 1 14.3604 3.2400 -2.2475 47 1 10.2434 3.9092 0.6757 48 1 7.7841 3.9330 0.6828 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871339466.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:42 Heat of formation + Delta-G solvation = -100.252793 kcal Electronic energy + Delta-G solvation = -28815.241425 eV Core-core repulsion = 24835.292225 eV Total energy + Delta-G solvation = -3979.949199 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.27263 -39.61820 -38.29025 -36.39292 -35.84379 -35.21944 -32.46964 -31.59190 -30.69647 -30.19791 -27.72375 -27.16719 -26.58163 -25.11545 -24.11851 -21.97513 -21.65736 -20.53776 -19.90049 -19.25613 -17.81878 -17.29301 -16.57150 -16.40122 -16.10728 -15.59616 -15.19136 -14.81582 -14.65000 -14.30203 -14.18672 -13.97485 -13.72606 -13.40117 -13.15164 -12.97922 -12.80049 -12.69337 -12.49199 -12.36257 -12.18869 -12.09387 -11.90944 -11.79594 -11.67452 -11.38327 -11.17291 -10.93033 -10.80464 -10.68139 -10.65957 -10.53118 -10.43934 -10.26174 -10.08856 -9.95744 -9.33309 -8.74581 -8.34390 -8.05970 -7.91867 -6.59828 -4.23838 1.59219 2.02290 2.47896 2.87819 3.05559 3.19420 3.28145 3.64266 4.03878 4.23634 4.45098 4.80030 4.87204 4.90793 4.99103 5.10463 5.15015 5.21349 5.32244 5.44100 5.48406 5.48828 5.53066 5.58105 5.61682 5.66657 5.68927 5.80283 5.81975 5.90438 5.95705 6.00091 6.06108 6.09544 6.24890 6.26131 6.32758 6.38472 6.44823 6.53474 6.60793 6.68014 6.95852 7.12969 7.18661 7.22249 7.57492 7.91364 7.98766 8.11997 8.78765 9.17090 9.50297 10.47473 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015752 B = 0.003091 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.138244 B = 9055.903723 C =10127.973499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.467 3.533 4 O -0.511 6.511 5 C -0.122 4.122 6 C 0.114 3.886 7 N -0.458 5.458 8 C -0.353 4.353 9 H 0.115 0.885 10 C 0.071 3.929 11 N -0.852 5.852 12 Si 0.866 3.134 13 H -0.268 1.268 14 H -0.285 1.285 15 H -0.258 1.258 16 C 0.524 3.476 17 O -0.590 6.590 18 C -0.107 4.107 19 C -0.077 4.077 20 C -0.139 4.139 21 C -0.073 4.073 22 C -0.075 4.075 23 C -0.092 4.092 24 C -0.150 4.150 25 C -0.146 4.146 26 C -0.138 4.138 27 C -0.061 4.061 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.278 0.722 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.049 0.951 42 H 0.051 0.949 43 H 0.064 0.936 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.053 0.947 47 H 0.118 0.882 48 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.588 -3.396 -5.943 8.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.311 3.689 4 O -0.398 6.398 5 C -0.161 4.161 6 C -0.010 4.010 7 N -0.177 5.177 8 C -0.480 4.480 9 H 0.133 0.867 10 C -0.138 4.138 11 N -0.485 5.485 12 Si 0.693 3.307 13 H -0.194 1.194 14 H -0.212 1.212 15 H -0.182 1.182 16 C 0.315 3.685 17 O -0.476 6.476 18 C -0.110 4.110 19 C -0.096 4.096 20 C -0.157 4.157 21 C -0.074 4.074 22 C -0.112 4.112 23 C -0.110 4.110 24 C -0.208 4.208 25 C -0.204 4.204 26 C -0.156 4.156 27 C -0.080 4.080 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.134 0.866 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.139 0.861 37 H 0.133 0.867 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.136 0.864 48 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.036 -3.032 -6.215 8.555 hybrid contribution -0.934 0.639 0.222 1.153 sum 4.102 -2.393 -5.993 7.647 Atomic orbital electron populations 1.23207 0.77057 1.03267 1.02403 1.86534 1.22961 1.33970 1.84407 1.23998 0.92299 0.81039 0.71608 1.90648 1.67379 1.36335 1.45486 1.21794 0.86159 1.01692 1.06469 1.21424 0.83115 0.93274 1.03140 1.43536 1.03702 1.64504 1.05973 1.19211 1.10811 1.30149 0.87801 0.86743 1.25338 0.97013 0.96794 0.94688 1.69698 1.42497 1.37718 0.98631 0.87052 0.81526 0.82340 0.79763 1.19437 1.21152 1.18202 1.18384 0.87265 0.79364 0.83532 1.90644 1.69951 1.55210 1.31752 1.19838 0.93304 1.01698 0.96179 1.21117 0.93697 0.97618 0.97150 1.20752 0.93665 1.02480 0.98837 1.19907 0.94978 0.97724 0.94768 1.20662 0.91596 0.98022 1.00916 1.21081 0.95276 0.98334 0.96348 1.21921 1.02370 1.01065 0.95410 1.21849 0.95490 1.01480 1.01549 1.21030 0.94483 1.01641 0.98463 1.22420 0.93506 0.94935 0.97097 0.92062 0.92096 0.88390 0.87541 0.86584 0.90595 0.90005 0.91172 0.86108 0.86674 0.91397 0.91165 0.91007 0.93202 0.92990 0.91716 0.92878 0.92748 0.92838 0.86428 0.81706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 101.05 1.07 1.47 16 2 O -0.36 -5.64 10.56 -39.24 -0.41 -6.06 16 3 C 0.47 8.54 7.96 36.01 0.29 8.83 16 4 O -0.51 -10.57 15.73 -18.75 -0.29 -10.87 16 5 C -0.12 -2.30 6.14 -27.88 -0.17 -2.47 16 6 C 0.11 2.52 3.49 -4.04 -0.01 2.51 16 7 N -0.46 -10.62 2.13 -115.92 -0.25 -10.86 16 8 C -0.35 -8.50 6.58 -15.00 -0.10 -8.60 16 9 H 0.12 2.88 6.38 -52.49 -0.34 2.55 16 10 C 0.07 1.75 5.32 -17.45 -0.09 1.66 16 11 N -0.85 -21.95 13.95 55.50 0.77 -21.18 16 12 Si 0.87 20.14 24.92 -169.99 -4.24 15.91 16 13 H -0.27 -6.28 6.73 56.52 0.38 -5.90 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.26 -6.19 7.11 56.52 0.40 -5.79 16 16 C 0.52 12.14 7.41 -12.38 -0.09 12.05 16 17 O -0.59 -14.71 16.32 5.29 0.09 -14.62 16 18 C -0.11 -2.21 5.52 -104.97 -0.58 -2.79 16 19 C -0.08 -1.37 9.60 -39.17 -0.38 -1.75 16 20 C -0.14 -2.11 7.93 -39.64 -0.31 -2.42 16 21 C -0.07 -1.08 4.72 -104.52 -0.49 -1.57 16 22 C -0.07 -0.86 4.83 -27.89 -0.13 -0.99 16 23 C -0.09 -0.97 2.91 -90.62 -0.26 -1.23 16 24 C -0.15 -1.58 8.75 37.16 0.33 -1.25 16 25 C -0.15 -1.28 9.19 37.16 0.34 -0.93 16 26 C -0.14 -2.30 9.68 -39.64 -0.38 -2.68 16 27 C -0.06 -1.21 7.75 -39.17 -0.30 -1.51 16 28 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 29 H 0.06 0.70 8.13 -51.93 -0.42 0.27 16 30 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.11 1.89 8.14 -51.93 -0.42 1.47 16 32 H 0.12 2.11 8.14 -51.93 -0.42 1.69 16 33 H 0.08 1.77 3.35 -51.93 -0.17 1.59 16 34 H 0.08 1.88 7.33 -51.93 -0.38 1.50 16 35 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 36 H 0.12 2.10 7.96 -52.49 -0.42 1.68 16 37 H 0.12 1.45 8.03 -52.49 -0.42 1.03 16 38 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 39 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.78 6.26 -51.93 -0.33 0.46 16 44 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 48 H 0.17 3.57 5.40 -52.49 -0.28 3.29 16 LS Contribution 389.70 15.07 5.87 5.87 Total: -1.00 -28.95 389.70 -7.16 -36.11 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -7.41 Total: 7.38 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -1.30 Total: -1.69 kcal Atomic # 7 Polarization: -32.57 SS G_CDS: 0.53 Total: -32.04 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -0.62 Total: -31.55 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.24 Total: 15.91 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -28.95 -7.16 -36.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871339466.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.141 kcal (2) G-P(sol) polarization free energy of solvation -28.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds