Wall clock time and date at job start Tue Mar 31 2020 18:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34222 * 117.00278 * 2 1 4 4 O 1.20827 * 120.00159 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00175 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47256 * 180.02562 * 5 3 2 7 7 N 1.46500 * 109.47268 * 180.02562 * 6 5 3 8 8 C 1.36864 * 119.99694 * 269.99776 * 7 6 5 9 9 H 1.07999 * 119.99912 * 139.32588 * 8 7 6 10 10 C 1.39054 * 120.00425 * 319.32043 * 8 7 6 11 11 N 1.31360 * 119.99993 * 161.49848 * 10 8 7 12 12 Si 1.86798 * 119.99659 * 341.49920 * 10 8 7 13 13 H 1.48497 * 109.47076 * 95.26472 * 12 10 8 14 14 H 1.48503 * 109.46811 * 215.26165 * 12 10 8 15 15 H 1.48496 * 109.47422 * 335.26554 * 12 10 8 16 16 C 1.34777 * 119.99829 * 89.99994 * 7 6 5 17 17 O 1.21591 * 120.00255 * 3.69811 * 16 7 6 18 18 C 1.47728 * 119.99690 * 183.70420 * 16 7 6 19 19 C 1.39644 * 120.14965 * 147.77898 * 18 16 7 20 20 C 1.37942 * 119.84677 * 180.02562 * 19 18 16 21 21 C 1.38381 * 120.14999 * 359.97438 * 20 19 18 22 22 C 1.50694 * 119.84697 * 179.97438 * 21 20 19 23 23 C 1.52994 * 109.47694 * 89.99445 * 22 21 20 24 24 C 1.53002 * 109.47335 * 295.00359 * 23 22 21 25 25 C 1.52998 * 109.47484 * 174.99938 * 23 22 21 26 26 C 1.38381 * 120.30269 * 0.25419 * 21 20 19 27 27 C 1.37938 * 120.15097 * 359.48958 * 26 21 20 28 28 H 1.08995 * 109.47377 * 300.00130 * 1 2 3 29 29 H 1.09005 * 109.46743 * 60.00297 * 1 2 3 30 30 H 1.09002 * 109.47083 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46940 * 60.00170 * 5 3 2 32 32 H 1.09001 * 109.47093 * 299.99563 * 5 3 2 33 33 H 1.09003 * 109.47371 * 59.99372 * 6 5 3 34 34 H 1.09001 * 109.47001 * 300.00310 * 6 5 3 35 35 H 0.96999 * 119.99970 * 180.02562 * 11 10 8 36 36 H 1.07995 * 120.07798 * 359.97438 * 19 18 16 37 37 H 1.07999 * 119.92504 * 179.97438 * 20 19 18 38 38 H 1.09002 * 109.46822 * 329.99063 * 22 21 20 39 39 H 1.09004 * 109.47104 * 210.00158 * 22 21 20 40 40 H 1.09002 * 109.46836 * 54.99938 * 23 22 21 41 41 H 1.08995 * 109.47429 * 179.97438 * 24 23 22 42 42 H 1.09002 * 109.46814 * 299.99592 * 24 23 22 43 43 H 1.08999 * 109.47026 * 59.99056 * 24 23 22 44 44 H 1.08995 * 109.47085 * 180.02562 * 25 23 22 45 45 H 1.08999 * 109.47087 * 300.00274 * 25 23 22 46 46 H 1.09002 * 109.47085 * 60.00152 * 25 23 22 47 47 H 1.08000 * 119.91941 * 179.74939 * 26 21 20 48 48 H 1.08001 * 120.07381 * 180.26028 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 6 4.0002 2.7420 0.0011 7 7 5.4632 2.8186 0.0011 8 6 6.1466 2.8540 1.1863 9 1 7.0616 2.2915 1.2991 10 6 5.6629 3.6143 2.2454 11 7 6.0840 3.3810 3.4676 12 14 4.4144 4.9675 1.9300 13 1 3.0448 4.4395 2.1546 14 1 4.6667 6.0996 2.8573 15 1 4.5392 5.4391 0.5274 16 6 6.1361 2.8543 -1.1662 17 8 5.5272 2.8908 -2.2181 18 6 7.6133 2.8489 -1.1676 19 6 8.3115 2.2363 -2.2103 20 6 9.6909 2.2345 -2.2050 21 6 10.3828 2.8384 -1.1699 22 6 11.8897 2.8319 -1.1707 23 6 12.4048 4.0740 -1.9004 24 6 11.9989 4.0049 -3.3740 25 6 13.9299 4.1326 -1.7937 26 6 9.6972 3.4432 -0.1311 27 6 8.3179 3.4570 -0.1264 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.9564 0.7805 -0.8892 32 1 3.9557 0.7809 0.8909 33 1 3.6101 3.2360 0.8910 34 1 3.6108 3.2363 -0.8889 35 1 5.7463 3.9111 4.2064 36 1 7.7728 1.7642 -3.0185 37 1 10.2322 1.7607 -3.0106 38 1 12.2489 1.9369 -1.6788 39 1 12.2536 2.8370 -0.1432 40 1 11.9743 4.9667 -1.4466 41 1 12.3655 4.8900 -3.8938 42 1 12.4295 3.1122 -3.8279 43 1 10.9124 3.9631 -3.4500 44 1 14.2968 5.0178 -2.3132 45 1 14.2190 4.1819 -0.7439 46 1 14.3604 3.2400 -2.2475 47 1 10.2434 3.9092 0.6757 48 1 7.7841 3.9330 0.6828 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871339466.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:41 Heat of formation + Delta-G solvation = -114.313978 kcal Electronic energy + Delta-G solvation = -28815.851164 eV Core-core repulsion = 24835.292225 eV Total energy + Delta-G solvation = -3980.558938 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.74752 -41.17715 -39.71719 -37.78446 -37.07185 -36.86810 -34.30336 -33.15455 -32.04213 -31.60523 -28.87209 -27.97427 -27.74636 -26.93803 -25.60530 -23.35498 -23.02756 -21.97235 -21.08204 -20.71405 -19.52078 -18.76543 -18.23543 -17.83728 -17.59380 -16.99595 -16.61136 -16.30748 -16.15425 -15.73360 -15.41137 -15.13453 -15.06475 -14.85080 -14.56003 -14.45999 -14.26674 -14.16288 -14.04425 -13.67855 -13.52035 -13.21642 -13.06189 -12.97685 -12.93763 -12.72681 -12.69747 -12.40862 -12.11576 -11.92484 -11.86421 -11.79189 -11.70743 -11.60440 -11.54547 -11.42334 -11.18951 -10.59168 -9.89948 -9.63313 -9.43902 -8.55014 -6.17798 0.15458 0.64617 1.02033 1.15661 1.27025 1.36182 1.53545 1.96064 2.11749 2.55107 2.80479 3.10626 3.65462 3.79119 3.87963 3.99415 4.02042 4.14268 4.16911 4.20792 4.26911 4.27964 4.28246 4.36043 4.47524 4.57910 4.64426 4.65553 4.67777 4.77907 4.85146 4.90731 4.92987 5.03891 5.14238 5.14955 5.19445 5.22536 5.28530 5.33634 5.40335 5.50844 5.55907 5.60562 5.74870 5.82056 6.01845 6.15075 6.22613 6.58371 6.87211 7.28845 7.64277 8.55787 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015752 B = 0.003091 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.138244 B = 9055.903723 C =10127.973499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.359 6.359 3 C 0.475 3.525 4 O -0.540 6.540 5 C -0.115 4.115 6 C 0.112 3.888 7 N -0.466 5.466 8 C -0.334 4.334 9 H 0.103 0.897 10 C 0.048 3.952 11 N -0.880 5.880 12 Si 0.902 3.098 13 H -0.271 1.271 14 H -0.277 1.277 15 H -0.275 1.275 16 C 0.519 3.481 17 O -0.614 6.614 18 C -0.140 4.140 19 C -0.081 4.081 20 C -0.128 4.128 21 C -0.057 4.057 22 C -0.072 4.072 23 C -0.091 4.091 24 C -0.151 4.151 25 C -0.142 4.142 26 C -0.141 4.141 27 C -0.076 4.076 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.139 0.861 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.282 0.718 36 H 0.123 0.877 37 H 0.150 0.850 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.045 0.955 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.063 0.937 47 H 0.134 0.866 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.479 -4.632 -6.837 11.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C 0.319 3.681 4 O -0.430 6.430 5 C -0.153 4.153 6 C -0.011 4.011 7 N -0.185 5.185 8 C -0.462 4.462 9 H 0.120 0.880 10 C -0.158 4.158 11 N -0.516 5.516 12 Si 0.730 3.270 13 H -0.198 1.198 14 H -0.203 1.203 15 H -0.200 1.200 16 C 0.311 3.689 17 O -0.501 6.501 18 C -0.143 4.143 19 C -0.100 4.100 20 C -0.145 4.145 21 C -0.057 4.057 22 C -0.110 4.110 23 C -0.109 4.109 24 C -0.208 4.208 25 C -0.200 4.200 26 C -0.159 4.159 27 C -0.094 4.094 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.157 0.843 31 H 0.134 0.866 32 H 0.141 0.859 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.141 0.859 37 H 0.167 0.833 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.152 0.848 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.920 -4.283 -7.097 10.799 hybrid contribution -1.462 0.980 0.392 1.803 sum 5.459 -3.304 -6.705 9.256 Atomic orbital electron populations 1.23621 0.74511 1.06037 1.02569 1.86506 1.25333 1.32048 1.83621 1.23732 0.91947 0.81437 0.70994 1.90637 1.67885 1.37453 1.47048 1.21606 0.87176 0.99302 1.07243 1.21356 0.82569 0.95458 1.01741 1.43621 1.04119 1.64910 1.05847 1.19024 1.10224 1.29170 0.87753 0.87981 1.25571 0.97936 0.97630 0.94671 1.69714 1.43913 1.38858 0.99070 0.86504 0.80453 0.81468 0.78588 1.19763 1.20304 1.20033 1.18898 0.88604 0.78339 0.83020 1.90605 1.70855 1.56301 1.32364 1.19784 0.91809 1.04533 0.98158 1.21243 0.95017 0.97404 0.96318 1.21098 0.92498 1.01410 0.99522 1.20298 0.97018 0.95182 0.93250 1.20753 0.88717 0.99401 1.02091 1.21062 0.96634 0.97151 0.96078 1.21926 1.01146 1.02173 0.95568 1.21808 0.93779 1.02295 1.02080 1.21215 0.93259 1.01742 0.99676 1.22141 0.94891 0.95937 0.96469 0.92068 0.91864 0.84324 0.86563 0.85943 0.91826 0.91430 0.90796 0.85931 0.83252 0.89418 0.90244 0.92341 0.92594 0.91535 0.93606 0.92350 0.92365 0.91788 0.84844 0.84445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.56 113.37 1.20 1.75 16 2 O -0.36 -10.74 10.56 -51.34 -0.54 -11.29 16 3 C 0.47 17.31 7.96 71.24 0.57 17.87 16 4 O -0.54 -22.58 15.73 21.96 0.35 -22.24 16 5 C -0.11 -4.36 6.14 29.85 0.18 -4.17 16 6 C 0.11 5.12 3.49 86.38 0.30 5.42 16 7 N -0.47 -22.34 2.13 -638.93 -1.36 -23.70 16 8 C -0.33 -16.63 6.58 84.10 0.55 -16.07 16 9 H 0.10 5.33 6.38 -2.91 -0.02 5.31 16 10 C 0.05 2.44 5.32 84.96 0.45 2.89 16 11 N -0.88 -46.14 13.95 21.68 0.30 -45.84 16 12 Si 0.90 42.68 24.92 68.60 1.71 44.39 16 13 H -0.27 -12.86 6.73 99.48 0.67 -12.19 16 14 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 15 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 16 C 0.52 24.88 7.41 86.75 0.64 25.53 16 17 O -0.61 -31.54 16.32 -4.00 -0.07 -31.60 16 18 C -0.14 -5.89 5.52 -20.09 -0.11 -6.00 16 19 C -0.08 -2.84 9.60 22.54 0.22 -2.62 16 20 C -0.13 -3.54 7.93 22.23 0.18 -3.37 16 21 C -0.06 -1.54 4.72 -19.80 -0.09 -1.64 16 22 C -0.07 -1.40 4.83 29.84 0.14 -1.26 16 23 C -0.09 -1.63 2.91 -10.80 -0.03 -1.66 16 24 C -0.15 -2.70 8.75 71.98 0.63 -2.07 16 25 C -0.14 -1.98 9.19 71.98 0.66 -1.32 16 26 C -0.14 -4.57 9.68 22.23 0.22 -4.35 16 27 C -0.08 -3.05 7.75 22.54 0.17 -2.88 16 28 H 0.06 1.34 8.13 -2.39 -0.02 1.32 16 29 H 0.06 1.35 8.13 -2.38 -0.02 1.34 16 30 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.12 4.16 8.14 -2.39 -0.02 4.14 16 32 H 0.12 4.48 8.14 -2.39 -0.02 4.46 16 33 H 0.06 3.05 3.35 -2.39 -0.01 3.05 16 34 H 0.07 3.24 7.33 -2.39 -0.02 3.22 16 35 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 36 H 0.12 4.20 7.96 -2.91 -0.02 4.18 16 37 H 0.15 3.15 8.03 -2.91 -0.02 3.12 16 38 H 0.09 1.43 8.08 -2.39 -0.02 1.41 16 39 H 0.08 1.45 8.08 -2.38 -0.02 1.43 16 40 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.04 0.99 6.26 -2.39 -0.01 0.98 16 44 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 46 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.13 3.83 8.06 -2.91 -0.02 3.80 16 48 H 0.14 6.24 5.40 -2.91 -0.02 6.23 16 Total: -1.00 -64.14 389.70 7.19 -56.95 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: 0.92 Total: 27.28 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 5.88 Total: 6.05 kcal Atomic # 7 Polarization: -68.48 SS G_CDS: -1.06 Total: -69.54 kcal Atomic # 8 Polarization: -64.87 SS G_CDS: -0.26 Total: -65.13 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 1.71 Total: 44.39 kcal Total: -64.14 7.19 -56.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871339466.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.363 kcal (2) G-P(sol) polarization free energy of solvation -64.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds