Wall clock time and date at job start Tue Mar 31 2020 18:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47327 * 2 1 4 4 C 1.38234 * 120.00195 * 269.72793 * 3 2 1 5 5 C 1.38235 * 120.00135 * 179.76524 * 4 3 2 6 6 C 1.38237 * 119.99648 * 0.48416 * 5 4 3 7 7 C 1.50700 * 119.99831 * 179.76913 * 6 5 4 8 8 C 1.53001 * 109.46991 * 270.02112 * 7 6 5 9 9 C 1.50700 * 109.46991 * 179.97438 * 8 7 6 10 10 O 1.21291 * 120.00331 * 0.02562 * 9 8 7 11 11 N 1.34785 * 119.99902 * 180.02562 * 9 8 7 12 12 C 1.37097 * 119.99905 * 359.97438 * 11 9 8 13 13 H 1.07997 * 120.00464 * 8.08034 * 12 11 9 14 14 C 1.38955 * 119.99833 * 188.08332 * 12 11 9 15 15 N 1.31412 * 119.99931 * 26.12343 * 14 12 11 16 16 Si 1.86801 * 119.99810 * 206.12626 * 14 12 11 17 17 H 1.48497 * 109.47300 * 84.98742 * 16 14 12 18 18 H 1.48502 * 109.46886 * 204.98952 * 16 14 12 19 19 H 1.48502 * 109.47181 * 324.98484 * 16 14 12 20 20 C 1.46500 * 119.99965 * 180.02562 * 11 9 8 21 21 C 1.52990 * 109.47361 * 83.24494 * 20 11 9 22 22 C 1.50696 * 109.47415 * 179.97438 * 21 20 11 23 23 O 1.20833 * 120.00078 * 0.02562 * 22 21 20 24 24 O 1.34232 * 120.00575 * 179.97438 * 22 21 20 25 25 C 1.45201 * 117.00240 * 179.97438 * 24 22 21 26 26 C 1.38231 * 120.00225 * 359.79318 * 6 5 4 27 27 C 1.38239 * 119.99626 * 89.99923 * 3 2 1 28 28 H 1.08998 * 109.47128 * 59.99959 * 1 2 3 29 29 H 1.08997 * 109.46899 * 300.00119 * 1 2 3 30 30 H 1.09005 * 109.47524 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47106 * 120.00825 * 2 1 3 32 32 H 1.09004 * 109.47151 * 239.99657 * 2 1 3 33 33 H 1.08004 * 119.99889 * 0.02562 * 4 3 2 34 34 H 1.07998 * 120.00082 * 180.25099 * 5 4 3 35 35 H 1.08998 * 109.47120 * 30.02038 * 7 6 5 36 36 H 1.09002 * 109.47186 * 150.02568 * 7 6 5 37 37 H 1.09001 * 109.47471 * 300.00311 * 8 7 6 38 38 H 1.08999 * 109.47229 * 60.00453 * 8 7 6 39 39 H 0.97000 * 119.99473 * 180.02562 * 15 14 12 40 40 H 1.09003 * 109.46844 * 203.24525 * 20 11 9 41 41 H 1.09002 * 109.47019 * 323.24369 * 20 11 9 42 42 H 1.09003 * 109.47166 * 299.99833 * 21 20 11 43 43 H 1.09002 * 109.47156 * 59.99958 * 21 20 11 44 44 H 1.08999 * 109.47253 * 300.00375 * 25 24 22 45 45 H 1.09007 * 109.46990 * 60.00382 * 25 24 22 46 46 H 1.09001 * 109.47098 * 179.97438 * 25 24 22 47 47 H 1.08000 * 120.00179 * 179.97438 * 26 6 5 48 48 H 1.07991 * 120.00268 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0705 -1.1971 5 6 2.7244 3.3754 -1.1971 6 6 2.9543 4.0272 0.0001 7 6 3.4566 5.4480 0.0001 8 6 4.9866 5.4480 0.0001 9 6 5.4889 6.8688 -0.0005 10 8 4.7008 7.7908 -0.0004 11 7 6.8141 7.1151 -0.0011 12 6 7.7050 6.0731 -0.0007 13 1 7.3521 5.0608 -0.1313 14 6 9.0621 6.3194 0.1679 15 7 9.4598 7.3917 0.8150 16 14 10.3210 5.1261 -0.5254 17 1 10.5832 5.4551 -1.9495 18 1 11.5840 5.2342 0.2483 19 1 9.7968 3.7402 -0.4258 20 6 7.3024 8.4963 -0.0011 21 6 7.3132 9.0335 1.4313 22 6 7.8161 10.4541 1.4314 23 8 8.1329 10.9829 0.3921 24 8 7.9111 11.1325 2.5858 25 6 8.4040 12.4962 2.5103 26 6 2.7240 3.3755 1.1972 27 6 2.2628 2.0723 1.1972 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5140 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 2.0919 1.5601 -2.1324 34 1 2.9047 3.8844 -2.1324 35 1 3.0933 5.9618 -0.8898 36 1 3.0933 5.9618 0.8902 37 1 5.3500 4.9341 0.8900 38 1 5.3500 4.9343 -0.8899 39 1 10.4072 7.5638 0.9323 40 1 8.3136 8.5242 -0.4072 41 1 6.6469 9.1134 -0.6157 42 1 6.3020 9.0057 1.8374 43 1 7.9687 8.4164 2.0459 44 1 9.4083 12.4967 2.0868 45 1 7.7423 13.0872 1.8770 46 1 8.4308 12.9287 3.5105 47 1 2.9041 3.8846 2.1325 48 1 2.0831 1.5631 2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871339702.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:59 Heat of formation + Delta-G solvation = -110.135671 kcal Electronic energy + Delta-G solvation = -28098.055298 eV Core-core repulsion = 24117.677544 eV Total energy + Delta-G solvation = -3980.377753 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -39.82585 -39.48952 -38.56607 -36.01034 -35.28849 -34.72044 -32.22393 -31.67822 -30.78925 -30.73077 -28.52991 -27.32848 -25.06517 -24.91424 -23.24946 -22.59224 -21.94217 -20.32347 -19.93558 -19.09697 -17.24154 -16.68807 -16.23657 -15.96810 -15.85910 -15.65037 -15.64032 -14.94771 -14.43484 -14.32176 -14.24413 -13.76708 -13.72002 -13.39774 -13.26784 -13.05119 -12.94492 -12.69420 -12.35375 -12.16009 -11.95054 -11.75382 -11.72529 -11.45168 -11.38464 -11.25938 -11.19958 -10.97687 -10.80722 -10.66176 -10.47783 -10.44196 -10.34608 -10.32362 -9.90517 -9.76046 -9.04727 -8.78189 -8.56987 -8.24188 -7.94525 -6.53305 -3.94761 1.47375 1.54336 2.96052 3.07644 3.19975 3.20249 3.30848 3.85354 3.86399 4.03348 4.67082 4.75508 4.79939 4.93732 5.10477 5.12295 5.20955 5.25073 5.38065 5.42460 5.44354 5.53096 5.56020 5.61500 5.74034 5.76231 5.81659 5.83814 5.88926 5.98775 6.03120 6.14959 6.18269 6.30391 6.32656 6.44222 6.50323 6.58237 6.65188 6.69779 6.71794 6.92997 6.94056 7.16012 7.16860 7.26403 7.43927 7.62841 8.30982 8.44534 8.98451 9.43487 9.84432 10.49371 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013459 B = 0.002625 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.946158 B =10664.449876 C =12106.728044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.097 4.097 4 C -0.117 4.117 5 C -0.115 4.115 6 C -0.073 4.073 7 C -0.065 4.065 8 C -0.111 4.111 9 C 0.453 3.547 10 O -0.609 6.609 11 N -0.441 5.441 12 C -0.340 4.340 13 H 0.104 0.896 14 C 0.041 3.959 15 N -0.859 5.859 16 Si 0.916 3.084 17 H -0.276 1.276 18 H -0.284 1.284 19 H -0.270 1.270 20 C 0.152 3.848 21 C -0.109 4.109 22 C 0.476 3.524 23 O -0.520 6.520 24 O -0.367 6.367 25 C 0.036 3.964 26 C -0.114 4.114 27 C -0.117 4.117 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.272 0.728 40 H 0.106 0.894 41 H 0.048 0.952 42 H 0.082 0.918 43 H 0.135 0.865 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.093 0.907 47 H 0.122 0.878 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.701 -7.532 1.839 11.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.097 4.097 4 C -0.135 4.135 5 C -0.133 4.133 6 C -0.073 4.073 7 C -0.102 4.102 8 C -0.151 4.151 9 C 0.242 3.758 10 O -0.497 6.497 11 N -0.159 5.159 12 C -0.467 4.467 13 H 0.122 0.878 14 C -0.165 4.165 15 N -0.497 5.497 16 Si 0.742 3.258 17 H -0.202 1.202 18 H -0.210 1.210 19 H -0.194 1.194 20 C 0.028 3.972 21 C -0.148 4.148 22 C 0.320 3.680 23 O -0.408 6.408 24 O -0.284 6.284 25 C -0.058 4.058 26 C -0.132 4.132 27 C -0.135 4.135 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.124 0.876 41 H 0.067 0.933 42 H 0.101 0.899 43 H 0.153 0.847 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.111 0.889 47 H 0.140 0.860 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.761 -6.805 1.590 11.207 hybrid contribution 1.047 -0.358 -0.269 1.139 sum -7.714 -7.164 1.322 10.610 Atomic orbital electron populations 1.21747 0.95000 1.01373 1.02209 1.20504 0.95960 0.93003 1.02557 1.19808 1.00430 0.96101 0.93348 1.20958 1.00399 0.94936 0.97248 1.21082 0.99636 0.94690 0.97882 1.20101 0.97544 0.96677 0.92973 1.20370 0.95145 0.90892 1.03829 1.21339 0.94100 0.96111 1.03574 1.20151 0.82404 0.90615 0.82598 1.90536 1.55393 1.46380 1.57342 1.43816 1.04219 1.05771 1.62074 1.19692 0.87475 0.88871 1.50658 0.87831 1.25148 0.98165 0.97554 0.95583 1.69990 1.16881 1.27982 1.34825 0.86118 0.79719 0.80488 0.79430 1.20196 1.21016 1.19448 1.20970 1.01371 0.81742 0.93084 1.21839 1.02181 0.87473 1.03293 1.24227 0.73749 0.89259 0.80771 1.90579 1.46675 1.70226 1.33316 1.86554 1.77846 1.27340 1.36710 1.23111 0.99410 0.80576 1.02738 1.21086 0.99523 0.94709 0.97900 1.20963 1.00352 0.94955 0.97253 0.92620 0.92601 0.92672 0.91280 0.91296 0.86546 0.86086 0.90744 0.90700 0.89919 0.90222 0.91772 0.87645 0.93329 0.89931 0.84710 0.92333 0.92480 0.88877 0.86040 0.86521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.89 37.16 0.37 -0.79 16 2 C -0.08 -0.74 6.06 -27.88 -0.17 -0.91 16 3 C -0.10 -1.12 5.13 -104.62 -0.54 -1.65 16 4 C -0.12 -1.41 9.70 -39.58 -0.38 -1.79 16 5 C -0.11 -1.54 9.70 -39.58 -0.38 -1.93 16 6 C -0.07 -1.06 5.13 -104.63 -0.54 -1.60 16 7 C -0.06 -1.07 4.63 -27.88 -0.13 -1.20 16 8 C -0.11 -2.09 4.07 -27.88 -0.11 -2.20 16 9 C 0.45 10.45 7.58 -10.98 -0.08 10.37 16 10 O -0.61 -15.39 15.68 5.55 0.09 -15.30 16 11 N -0.44 -10.68 2.64 -114.81 -0.30 -10.99 16 12 C -0.34 -8.15 9.25 -14.93 -0.14 -8.29 16 13 H 0.10 2.35 6.47 -52.49 -0.34 2.01 16 14 C 0.04 0.97 4.88 -17.47 -0.09 0.88 16 15 N -0.86 -20.95 8.72 55.50 0.48 -20.46 16 16 Si 0.92 18.81 29.63 -169.99 -5.04 13.77 16 17 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 18 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 20 C 0.15 3.71 3.81 -4.05 -0.02 3.69 16 21 C -0.11 -2.45 5.61 -27.89 -0.16 -2.61 16 22 C 0.48 10.17 7.96 36.00 0.29 10.46 16 23 O -0.52 -12.07 15.73 -18.76 -0.30 -12.36 16 24 O -0.37 -6.82 10.57 -39.26 -0.41 -7.23 16 25 C 0.04 0.50 10.56 101.05 1.07 1.57 16 26 C -0.11 -1.54 9.70 -39.58 -0.38 -1.92 16 27 C -0.12 -1.41 9.70 -39.58 -0.38 -1.79 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 32 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 33 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 34 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 35 H 0.07 1.27 8.04 -51.93 -0.42 0.85 16 36 H 0.07 1.27 8.04 -51.93 -0.42 0.86 16 37 H 0.08 1.52 8.02 -51.93 -0.42 1.11 16 38 H 0.08 1.45 7.79 -51.93 -0.40 1.04 16 39 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 40 H 0.11 2.74 5.77 -51.93 -0.30 2.44 16 41 H 0.05 1.23 7.59 -51.93 -0.39 0.83 16 42 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 43 H 0.14 3.17 6.41 -51.93 -0.33 2.83 16 44 H 0.06 0.82 8.13 -51.93 -0.42 0.39 16 45 H 0.06 0.78 8.13 -51.93 -0.42 0.35 16 46 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 48 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 399.48 15.07 6.02 6.02 Total: -1.00 -28.57 399.48 -8.88 -37.45 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -7.65 Total: 8.80 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -1.78 Total: 0.30 kcal Atomic # 7 Polarization: -31.63 SS G_CDS: 0.18 Total: -31.45 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -0.62 Total: -34.89 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.04 Total: 13.77 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -28.57 -8.88 -37.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871339702.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.683 kcal (2) G-P(sol) polarization free energy of solvation -28.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds