Wall clock time and date at job start Tue Mar 31 2020 18:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47327 * 2 1 4 4 C 1.38234 * 120.00195 * 269.72793 * 3 2 1 5 5 C 1.38235 * 120.00135 * 179.76524 * 4 3 2 6 6 C 1.38237 * 119.99648 * 0.48416 * 5 4 3 7 7 C 1.50700 * 119.99831 * 179.76913 * 6 5 4 8 8 C 1.53001 * 109.46991 * 270.02112 * 7 6 5 9 9 C 1.50700 * 109.46991 * 179.97438 * 8 7 6 10 10 O 1.21291 * 120.00331 * 0.02562 * 9 8 7 11 11 N 1.34785 * 119.99902 * 180.02562 * 9 8 7 12 12 C 1.37097 * 119.99905 * 359.97438 * 11 9 8 13 13 H 1.07997 * 120.00464 * 8.08034 * 12 11 9 14 14 C 1.38955 * 119.99833 * 188.08332 * 12 11 9 15 15 N 1.31412 * 119.99931 * 26.12343 * 14 12 11 16 16 Si 1.86801 * 119.99810 * 206.12626 * 14 12 11 17 17 H 1.48497 * 109.47300 * 84.98742 * 16 14 12 18 18 H 1.48502 * 109.46886 * 204.98952 * 16 14 12 19 19 H 1.48502 * 109.47181 * 324.98484 * 16 14 12 20 20 C 1.46500 * 119.99965 * 180.02562 * 11 9 8 21 21 C 1.52990 * 109.47361 * 83.24494 * 20 11 9 22 22 C 1.50696 * 109.47415 * 179.97438 * 21 20 11 23 23 O 1.20833 * 120.00078 * 0.02562 * 22 21 20 24 24 O 1.34232 * 120.00575 * 179.97438 * 22 21 20 25 25 C 1.45201 * 117.00240 * 179.97438 * 24 22 21 26 26 C 1.38231 * 120.00225 * 359.79318 * 6 5 4 27 27 C 1.38239 * 119.99626 * 89.99923 * 3 2 1 28 28 H 1.08998 * 109.47128 * 59.99959 * 1 2 3 29 29 H 1.08997 * 109.46899 * 300.00119 * 1 2 3 30 30 H 1.09005 * 109.47524 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47106 * 120.00825 * 2 1 3 32 32 H 1.09004 * 109.47151 * 239.99657 * 2 1 3 33 33 H 1.08004 * 119.99889 * 0.02562 * 4 3 2 34 34 H 1.07998 * 120.00082 * 180.25099 * 5 4 3 35 35 H 1.08998 * 109.47120 * 30.02038 * 7 6 5 36 36 H 1.09002 * 109.47186 * 150.02568 * 7 6 5 37 37 H 1.09001 * 109.47471 * 300.00311 * 8 7 6 38 38 H 1.08999 * 109.47229 * 60.00453 * 8 7 6 39 39 H 0.97000 * 119.99473 * 180.02562 * 15 14 12 40 40 H 1.09003 * 109.46844 * 203.24525 * 20 11 9 41 41 H 1.09002 * 109.47019 * 323.24369 * 20 11 9 42 42 H 1.09003 * 109.47166 * 299.99833 * 21 20 11 43 43 H 1.09002 * 109.47156 * 59.99958 * 21 20 11 44 44 H 1.08999 * 109.47253 * 300.00375 * 25 24 22 45 45 H 1.09007 * 109.46990 * 60.00382 * 25 24 22 46 46 H 1.09001 * 109.47098 * 179.97438 * 25 24 22 47 47 H 1.08000 * 120.00179 * 179.97438 * 26 6 5 48 48 H 1.07991 * 120.00268 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0705 -1.1971 5 6 2.7244 3.3754 -1.1971 6 6 2.9543 4.0272 0.0001 7 6 3.4566 5.4480 0.0001 8 6 4.9866 5.4480 0.0001 9 6 5.4889 6.8688 -0.0005 10 8 4.7008 7.7908 -0.0004 11 7 6.8141 7.1151 -0.0011 12 6 7.7050 6.0731 -0.0007 13 1 7.3521 5.0608 -0.1313 14 6 9.0621 6.3194 0.1679 15 7 9.4598 7.3917 0.8150 16 14 10.3210 5.1261 -0.5254 17 1 10.5832 5.4551 -1.9495 18 1 11.5840 5.2342 0.2483 19 1 9.7968 3.7402 -0.4258 20 6 7.3024 8.4963 -0.0011 21 6 7.3132 9.0335 1.4313 22 6 7.8161 10.4541 1.4314 23 8 8.1329 10.9829 0.3921 24 8 7.9111 11.1325 2.5858 25 6 8.4040 12.4962 2.5103 26 6 2.7240 3.3755 1.1972 27 6 2.2628 2.0723 1.1972 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5140 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 2.0919 1.5601 -2.1324 34 1 2.9047 3.8844 -2.1324 35 1 3.0933 5.9618 -0.8898 36 1 3.0933 5.9618 0.8902 37 1 5.3500 4.9341 0.8900 38 1 5.3500 4.9343 -0.8899 39 1 10.4072 7.5638 0.9323 40 1 8.3136 8.5242 -0.4072 41 1 6.6469 9.1134 -0.6157 42 1 6.3020 9.0057 1.8374 43 1 7.9687 8.4164 2.0459 44 1 9.4083 12.4967 2.0868 45 1 7.7423 13.0872 1.8770 46 1 8.4308 12.9287 3.5105 47 1 2.9041 3.8846 2.1325 48 1 2.0831 1.5631 2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871339702.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:58 Heat of formation + Delta-G solvation = -121.885284 kcal Electronic energy + Delta-G solvation = -28098.564799 eV Core-core repulsion = 24117.677544 eV Total energy + Delta-G solvation = -3980.887255 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.49771 -40.70329 -40.14147 -37.64300 -36.97805 -35.89661 -33.57402 -33.44545 -32.38775 -31.74993 -29.67900 -28.63439 -26.85136 -26.25401 -24.59777 -23.55594 -23.13223 -21.72460 -21.23335 -20.91448 -18.99293 -18.36706 -17.93140 -17.47926 -17.41274 -16.83314 -16.73508 -16.18573 -16.07902 -15.86589 -15.77869 -15.02098 -14.74229 -14.62021 -14.43048 -14.29245 -14.16589 -13.93858 -13.81729 -13.72770 -13.42472 -13.23069 -13.07340 -12.94383 -12.71807 -12.56838 -12.43319 -12.20602 -12.16358 -12.09469 -11.86459 -11.78925 -11.73115 -11.58682 -11.55613 -11.51563 -10.92009 -10.36360 -9.84205 -9.75296 -9.32148 -8.36341 -5.83671 0.47845 0.57115 1.23626 1.42345 1.52078 1.60237 1.75476 2.07279 2.30609 2.83364 3.02546 3.12489 3.86924 3.94796 4.00039 4.05562 4.21471 4.21889 4.24372 4.31162 4.32266 4.36962 4.42292 4.48383 4.56559 4.58393 4.65226 4.67407 4.71539 4.74041 4.77381 4.88342 5.06051 5.11792 5.13052 5.20043 5.20912 5.28840 5.31123 5.32349 5.38104 5.43551 5.57325 5.60181 5.76477 5.78846 5.84120 6.20055 6.43344 6.77963 7.12181 7.57604 7.98814 8.66343 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013459 B = 0.002625 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.946158 B =10664.449876 C =12106.728044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.095 4.095 4 C -0.122 4.122 5 C -0.125 4.125 6 C -0.092 4.092 7 C -0.052 4.052 8 C -0.098 4.098 9 C 0.442 3.558 10 O -0.637 6.637 11 N -0.451 5.451 12 C -0.359 4.359 13 H 0.115 0.885 14 C 0.004 3.996 15 N -0.878 5.878 16 Si 0.980 3.020 17 H -0.281 1.281 18 H -0.285 1.285 19 H -0.258 1.258 20 C 0.159 3.841 21 C -0.098 4.098 22 C 0.481 3.519 23 O -0.543 6.543 24 O -0.368 6.368 25 C 0.027 3.973 26 C -0.125 4.125 27 C -0.122 4.122 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.138 0.862 34 H 0.125 0.875 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.272 0.728 40 H 0.088 0.912 41 H 0.029 0.971 42 H 0.080 0.920 43 H 0.126 0.874 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.137 0.863 47 H 0.124 0.876 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.850 -9.586 2.272 13.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 C -0.095 4.095 4 C -0.139 4.139 5 C -0.143 4.143 6 C -0.092 4.092 7 C -0.090 4.090 8 C -0.138 4.138 9 C 0.233 3.767 10 O -0.527 6.527 11 N -0.168 5.168 12 C -0.485 4.485 13 H 0.133 0.867 14 C -0.199 4.199 15 N -0.516 5.516 16 Si 0.805 3.195 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.182 1.182 20 C 0.035 3.965 21 C -0.136 4.136 22 C 0.326 3.674 23 O -0.433 6.433 24 O -0.285 6.285 25 C -0.066 4.066 26 C -0.143 4.143 27 C -0.139 4.139 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.156 0.844 34 H 0.143 0.857 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.048 0.952 42 H 0.098 0.902 43 H 0.144 0.856 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.155 0.845 47 H 0.142 0.858 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.915 -8.863 2.047 12.737 hybrid contribution 1.078 0.344 -0.353 1.185 sum -7.837 -8.520 1.694 11.699 Atomic orbital electron populations 1.21733 0.94229 1.02367 1.01825 1.20570 0.96513 0.91245 1.03601 1.20196 0.99026 0.97361 0.92907 1.21233 0.99766 0.94383 0.98551 1.21223 0.99939 0.95537 0.97627 1.19931 0.99559 0.95619 0.94102 1.20175 0.93493 0.92544 1.02758 1.21270 0.95571 0.93006 1.03970 1.20914 0.81856 0.92192 0.81757 1.90505 1.55947 1.47727 1.58475 1.44028 1.04896 1.05724 1.62185 1.20019 0.87837 0.89251 1.51390 0.86696 1.25918 0.99517 0.99163 0.95306 1.70075 1.17077 1.29295 1.35157 0.85128 0.77275 0.79096 0.78019 1.20720 1.21054 1.18182 1.20761 0.99676 0.82190 0.93906 1.21571 1.01842 0.88494 1.01731 1.23887 0.73300 0.89003 0.81208 1.90564 1.47768 1.70699 1.34265 1.86513 1.77550 1.29531 1.34875 1.23551 0.99272 0.78089 1.05687 1.21222 0.99867 0.95564 0.97638 1.21236 0.99746 0.94401 0.98562 0.93019 0.93009 0.91026 0.90281 0.90273 0.84429 0.85737 0.91800 0.91782 0.89469 0.89484 0.91811 0.89371 0.95248 0.90151 0.85634 0.92280 0.92065 0.84545 0.85767 0.84439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.89 71.98 0.71 -1.18 16 2 C -0.08 -1.21 6.06 29.85 0.18 -1.03 16 3 C -0.09 -1.97 5.13 -19.87 -0.10 -2.07 16 4 C -0.12 -2.68 9.70 22.27 0.22 -2.47 16 5 C -0.13 -3.27 9.70 22.27 0.22 -3.05 16 6 C -0.09 -2.66 5.13 -19.87 -0.10 -2.76 16 7 C -0.05 -1.75 4.63 29.85 0.14 -1.62 16 8 C -0.10 -3.74 4.07 29.85 0.12 -3.62 16 9 C 0.44 20.98 7.58 87.66 0.66 21.65 16 10 O -0.64 -33.37 15.68 -3.06 -0.05 -33.42 16 11 N -0.45 -22.43 2.64 -635.54 -1.68 -24.10 16 12 C -0.36 -17.28 9.25 84.04 0.78 -16.50 16 13 H 0.12 5.16 6.47 -2.91 -0.02 5.14 16 14 C 0.00 0.20 4.88 84.93 0.41 0.61 16 15 N -0.88 -43.32 8.72 21.66 0.19 -43.13 16 16 Si 0.98 38.18 29.63 68.60 2.03 40.21 16 17 H -0.28 -11.14 7.11 99.48 0.71 -10.44 16 18 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 19 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 20 C 0.16 8.04 3.81 86.38 0.33 8.37 16 21 C -0.10 -4.52 5.61 29.84 0.17 -4.35 16 22 C 0.48 20.89 7.96 71.23 0.57 21.46 16 23 O -0.54 -25.68 15.73 21.94 0.35 -25.34 16 24 O -0.37 -13.44 10.57 -51.44 -0.54 -13.98 16 25 C 0.03 0.71 10.56 113.37 1.20 1.91 16 26 C -0.12 -3.27 9.70 22.27 0.22 -3.06 16 27 C -0.12 -2.70 9.70 22.27 0.22 -2.48 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 32 H 0.08 1.03 8.08 -2.38 -0.02 1.01 16 33 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 34 H 0.12 3.05 8.06 -2.91 -0.02 3.03 16 35 H 0.06 2.25 8.04 -2.39 -0.02 2.23 16 36 H 0.06 2.26 8.04 -2.39 -0.02 2.24 16 37 H 0.09 3.22 8.02 -2.39 -0.02 3.20 16 38 H 0.09 3.16 7.79 -2.39 -0.02 3.14 16 39 H 0.27 12.89 8.31 -92.71 -0.77 12.12 16 40 H 0.09 4.76 5.77 -2.39 -0.01 4.74 16 41 H 0.03 1.56 7.59 -2.39 -0.02 1.54 16 42 H 0.08 3.70 8.14 -2.39 -0.02 3.68 16 43 H 0.13 6.07 6.41 -2.39 -0.02 6.05 16 44 H 0.06 1.57 8.13 -2.39 -0.02 1.55 16 45 H 0.06 1.58 8.13 -2.38 -0.02 1.56 16 46 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 47 H 0.12 3.07 8.06 -2.91 -0.02 3.05 16 48 H 0.14 2.40 8.06 -2.92 -0.02 2.38 16 Total: -1.00 -62.13 399.48 7.17 -54.96 By element: Atomic # 1 Polarization: 34.03 SS G_CDS: 0.94 Total: 34.97 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 5.93 Total: 9.82 kcal Atomic # 7 Polarization: -65.74 SS G_CDS: -1.49 Total: -67.23 kcal Atomic # 8 Polarization: -72.49 SS G_CDS: -0.25 Total: -72.73 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.21 kcal Total: -62.13 7.17 -54.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871339702.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.923 kcal (2) G-P(sol) polarization free energy of solvation -62.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds