Wall clock time and date at job start Tue Mar 31 2020 18:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50707 * 109.47156 * 2 1 4 4 C 1.38230 * 120.00008 * 269.72321 * 3 2 1 5 5 C 1.38233 * 120.00021 * 179.76342 * 4 3 2 6 6 C 1.38234 * 119.99827 * 0.51290 * 5 4 3 7 7 C 1.50701 * 119.99840 * 179.71877 * 6 5 4 8 8 H 1.09003 * 109.46663 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.46846 * 60.02443 * 7 6 5 10 10 C 1.50690 * 109.47527 * 300.02305 * 7 6 5 11 11 O 1.21298 * 119.99979 * 24.29669 * 10 7 6 12 12 N 1.34783 * 120.00185 * 204.29835 * 10 7 6 13 13 C 1.37101 * 119.99978 * 174.46815 * 12 10 7 14 14 H 1.08000 * 119.99923 * 151.85235 * 13 12 10 15 15 C 1.38955 * 119.99901 * 331.84372 * 13 12 10 16 16 N 1.31412 * 119.99662 * 110.58959 * 15 13 12 17 17 Si 1.86792 * 120.00158 * 290.59095 * 15 13 12 18 18 H 1.48503 * 109.47322 * 89.99901 * 17 15 13 19 19 H 1.48502 * 109.47036 * 209.99784 * 17 15 13 20 20 H 1.48501 * 109.47313 * 330.00075 * 17 15 13 21 21 C 1.46498 * 119.99612 * 354.46091 * 12 10 7 22 22 C 1.53009 * 109.46747 * 91.83034 * 21 12 10 23 23 C 1.50701 * 109.46935 * 179.97438 * 22 21 12 24 24 O 1.20825 * 119.99989 * 359.97438 * 23 22 21 25 25 O 1.34223 * 119.99978 * 179.97438 * 23 22 21 26 26 C 1.45195 * 117.00172 * 179.97438 * 25 23 22 27 27 C 1.38232 * 120.00213 * 359.74509 * 6 5 4 28 28 C 1.38234 * 119.99981 * 89.99955 * 3 2 1 29 29 H 1.08992 * 109.47068 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47336 * 300.00449 * 1 2 3 31 31 H 1.09004 * 109.46931 * 59.99642 * 1 2 3 32 32 H 1.09001 * 109.47178 * 119.99627 * 2 1 3 33 33 H 1.09001 * 109.47167 * 240.00312 * 2 1 3 34 34 H 1.08003 * 119.99985 * 0.02562 * 4 3 2 35 35 H 1.08002 * 120.00238 * 180.23037 * 5 4 3 36 36 H 1.08999 * 109.47157 * 55.36646 * 9 7 6 37 37 H 1.09002 * 109.46947 * 175.36084 * 9 7 6 38 38 H 1.08996 * 109.47376 * 295.36130 * 9 7 6 39 39 H 0.96995 * 120.00050 * 184.94592 * 16 15 13 40 40 H 1.09001 * 109.46950 * 211.82078 * 21 12 10 41 41 H 1.08997 * 109.47409 * 331.82891 * 21 12 10 42 42 H 1.08995 * 109.46961 * 299.99421 * 22 21 12 43 43 H 1.08999 * 109.46765 * 59.99773 * 22 21 12 44 44 H 1.08999 * 109.46833 * 60.00622 * 26 25 23 45 45 H 1.09003 * 109.47349 * 180.02562 * 26 25 23 46 46 H 1.09000 * 109.47807 * 300.00682 * 26 25 23 47 47 H 1.07999 * 120.00574 * 179.97438 * 27 6 5 48 48 H 1.08007 * 119.99870 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3755 -1.1971 6 6 2.9547 4.0271 0.0000 7 6 3.4580 5.4476 0.0000 8 1 3.5794 5.7900 1.0277 9 6 2.4507 6.3455 -0.7213 10 6 4.7855 5.5102 -0.7104 11 8 5.0751 4.6645 -1.5302 12 7 5.6510 6.5060 -0.4348 13 6 6.9023 6.5012 -0.9950 14 1 7.4187 7.4333 -1.1711 15 6 7.5063 5.2972 -1.3360 16 7 7.6787 4.9836 -2.6004 17 14 8.0730 4.1244 0.0029 18 1 6.9699 3.1895 0.3416 19 1 9.2459 3.3519 -0.4797 20 1 8.4536 4.8992 1.2112 21 6 5.2545 7.5935 0.4632 22 6 5.6591 7.2441 1.8968 23 6 5.2518 8.3631 2.8205 24 8 4.6955 9.3399 2.3775 25 8 5.5071 8.2745 4.1353 26 6 5.0872 9.3897 4.9649 27 6 2.7239 3.3757 1.1972 28 6 2.2627 2.0725 1.1971 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 2.0920 1.5601 -2.1324 35 1 2.9050 3.8844 -2.1324 36 1 1.4702 6.2372 -0.2576 37 1 2.7736 7.3841 -0.6499 38 1 2.3908 6.0549 -1.7701 39 1 8.0341 4.1135 -2.8402 40 1 5.7517 8.5148 0.1597 41 1 4.1743 7.7301 0.4135 42 1 5.1620 6.3229 2.2004 43 1 6.7394 7.1075 1.9464 44 1 4.0076 9.5163 4.8841 45 1 5.3533 9.1907 6.0030 46 1 5.5857 10.2995 4.6304 47 1 2.9043 3.8846 2.1325 48 1 2.0831 1.5632 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871341520.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:09 Heat of formation + Delta-G solvation = -85.775348 kcal Electronic energy + Delta-G solvation = -29590.515388 eV Core-core repulsion = 25611.193978 eV Total energy + Delta-G solvation = -3979.321410 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.33973 -39.60975 -38.26964 -36.44363 -34.96568 -34.34588 -32.84829 -31.89698 -30.55759 -30.47291 -28.28473 -27.62946 -25.29662 -24.50960 -23.60112 -22.36176 -22.07708 -20.64791 -20.22612 -19.00299 -17.59620 -16.93585 -16.47318 -16.31591 -15.92135 -15.52944 -15.11608 -14.82797 -14.60926 -14.16855 -13.83209 -13.67120 -13.53642 -13.45499 -13.23546 -13.14565 -12.87644 -12.64663 -12.49044 -12.35330 -12.25191 -12.12258 -11.80926 -11.54097 -11.32112 -11.27567 -11.13674 -11.01493 -10.79128 -10.76371 -10.56120 -10.55126 -10.36832 -10.30835 -10.27393 -9.99989 -8.73138 -8.47057 -8.12041 -8.05606 -7.50772 -6.72116 -3.49225 1.73591 1.86995 2.38270 2.83062 3.29378 3.44466 3.49807 3.98496 4.17549 4.38037 4.55078 4.87745 4.92641 4.97809 5.06314 5.07323 5.13559 5.22367 5.32461 5.36084 5.37381 5.42570 5.45511 5.56931 5.59450 5.63847 5.74710 5.82397 5.83033 5.84664 5.85847 5.98557 6.12909 6.15965 6.19441 6.22328 6.31333 6.42574 6.46814 6.50760 6.55430 6.63689 6.84603 6.98562 7.16638 7.44249 7.51739 7.89409 8.11230 8.85421 9.20936 9.53306 10.17870 10.34600 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009232 B = 0.004457 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.348717 B = 6280.206983 C = 7915.818252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.094 4.094 4 C -0.125 4.125 5 C -0.069 4.069 6 C -0.059 4.059 7 C -0.072 4.072 8 H 0.078 0.922 9 C -0.134 4.134 10 C 0.441 3.559 11 O -0.543 6.543 12 N -0.428 5.428 13 C -0.477 4.477 14 H 0.092 0.908 15 C 0.198 3.802 16 N -0.713 5.713 17 Si 0.780 3.220 18 H -0.267 1.267 19 H -0.286 1.286 20 H -0.266 1.266 21 C 0.116 3.884 22 C -0.136 4.136 23 C 0.466 3.534 24 O -0.511 6.511 25 O -0.363 6.363 26 C 0.035 3.965 27 C -0.118 4.118 28 C -0.127 4.127 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.115 0.885 35 H 0.128 0.872 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.276 0.724 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.099 0.901 43 H 0.116 0.884 44 H 0.060 0.940 45 H 0.097 0.903 46 H 0.061 0.939 47 H 0.115 0.885 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.725 -1.384 10.165 14.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 C -0.094 4.094 4 C -0.143 4.143 5 C -0.087 4.087 6 C -0.060 4.060 7 C -0.094 4.094 8 H 0.097 0.903 9 C -0.192 4.192 10 C 0.230 3.770 11 O -0.424 6.424 12 N -0.148 5.148 13 C -0.594 4.594 14 H 0.110 0.890 15 C -0.030 4.030 16 N -0.333 5.333 17 Si 0.599 3.401 18 H -0.192 1.192 19 H -0.212 1.212 20 H -0.190 1.190 21 C -0.009 4.009 22 C -0.175 4.175 23 C 0.309 3.691 24 O -0.399 6.399 25 O -0.280 6.280 26 C -0.059 4.059 27 C -0.136 4.136 28 C -0.145 4.145 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.133 0.867 35 H 0.146 0.854 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.117 0.883 43 H 0.134 0.866 44 H 0.079 0.921 45 H 0.115 0.885 46 H 0.080 0.920 47 H 0.133 0.867 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.625 -1.512 9.361 14.241 hybrid contribution 0.533 -0.542 1.158 1.385 sum -10.093 -2.053 10.519 14.722 Atomic orbital electron populations 1.21734 0.95107 1.01179 1.02138 1.20490 0.95836 0.93211 1.02408 1.19765 1.00390 0.95849 0.93397 1.20970 1.01047 0.95189 0.97073 1.21060 0.95048 0.94143 0.98409 1.19493 0.98086 0.95160 0.93225 1.20282 0.95823 0.92805 1.00459 0.90339 1.21748 0.97507 0.98959 1.00961 1.19714 0.84776 0.85956 0.86534 1.90591 1.76741 1.39533 1.35567 1.43383 1.12158 1.20856 1.38390 1.17938 0.95170 0.93587 1.52659 0.89020 1.24877 0.90073 0.94714 0.93342 1.70593 1.23371 1.19796 1.19587 0.88329 0.79530 0.83351 0.88871 1.19188 1.21170 1.19036 1.21506 0.99970 0.93282 0.86173 1.22160 1.05786 0.95290 0.94245 1.24131 0.75183 0.88294 0.81455 1.90638 1.39408 1.33063 1.76754 1.86560 1.75177 1.45809 1.20460 1.23205 1.00517 0.88365 0.93852 1.20962 1.00400 0.94971 0.97247 1.20798 1.01791 0.94882 0.97061 0.92824 0.92704 0.92596 0.91492 0.91342 0.86696 0.85392 0.92581 0.91838 0.91882 0.91310 0.90317 0.90890 0.88295 0.86586 0.92087 0.88489 0.92037 0.86713 0.86843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.89 37.16 0.37 -1.06 16 2 C -0.08 -0.95 6.07 -27.88 -0.17 -1.12 16 3 C -0.09 -1.40 5.13 -104.62 -0.54 -1.94 16 4 C -0.12 -2.04 9.70 -39.59 -0.38 -2.43 16 5 C -0.07 -1.28 7.93 -39.58 -0.31 -1.59 16 6 C -0.06 -1.09 4.64 -104.63 -0.49 -1.58 16 7 C -0.07 -1.33 2.06 -92.93 -0.19 -1.52 16 8 H 0.08 1.31 5.67 -51.93 -0.29 1.02 16 9 C -0.13 -2.15 8.71 37.16 0.32 -1.83 16 10 C 0.44 10.37 6.23 -10.99 -0.07 10.30 16 11 O -0.54 -14.85 12.21 5.54 0.07 -14.79 16 12 N -0.43 -10.03 2.55 -114.81 -0.29 -10.32 16 13 C -0.48 -12.79 9.32 -14.93 -0.14 -12.93 16 14 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 15 C 0.20 5.44 3.16 -17.47 -0.06 5.39 16 16 N -0.71 -20.16 13.66 55.50 0.76 -19.40 16 17 Si 0.78 19.80 28.86 -169.99 -4.91 14.89 16 18 H -0.27 -7.21 7.11 56.52 0.40 -6.80 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 C 0.12 2.18 4.26 -4.04 -0.02 2.16 16 22 C -0.14 -2.25 5.98 -27.88 -0.17 -2.42 16 23 C 0.47 7.26 7.96 36.01 0.29 7.54 16 24 O -0.51 -8.83 15.73 -18.75 -0.29 -9.12 16 25 O -0.36 -5.02 10.56 -39.24 -0.41 -5.44 16 26 C 0.03 0.35 10.56 101.05 1.07 1.42 16 27 C -0.12 -1.93 9.67 -39.58 -0.38 -2.31 16 28 C -0.13 -1.91 9.70 -39.58 -0.38 -2.29 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 33 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 34 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 35 H 0.13 2.54 6.96 -52.49 -0.37 2.18 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.98 6.32 -51.93 -0.33 0.65 16 38 H 0.06 1.06 7.56 -51.93 -0.39 0.67 16 39 H 0.28 7.32 8.32 -40.82 -0.34 6.98 16 40 H 0.08 1.51 8.01 -51.93 -0.42 1.10 16 41 H 0.07 1.26 4.82 -51.93 -0.25 1.01 16 42 H 0.10 1.55 7.00 -51.93 -0.36 1.18 16 43 H 0.12 2.01 8.14 -51.93 -0.42 1.59 16 44 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 45 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 47 H 0.11 1.64 7.95 -52.49 -0.42 1.22 16 48 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 393.94 15.07 5.94 5.94 Total: -1.00 -32.42 393.94 -7.85 -40.27 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -7.45 Total: 4.16 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -1.25 Total: -6.19 kcal Atomic # 7 Polarization: -30.19 SS G_CDS: 0.47 Total: -29.72 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.64 Total: -29.34 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.91 Total: 14.89 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.42 -7.85 -40.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871341520.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.507 kcal (2) G-P(sol) polarization free energy of solvation -32.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds