Wall clock time and date at job start Tue Mar 31 2020 18:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50707 * 109.47156 * 2 1 4 4 C 1.38230 * 120.00008 * 269.72321 * 3 2 1 5 5 C 1.38233 * 120.00021 * 179.76342 * 4 3 2 6 6 C 1.38234 * 119.99827 * 0.51290 * 5 4 3 7 7 C 1.50701 * 119.99840 * 179.71877 * 6 5 4 8 8 H 1.09003 * 109.46663 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.46846 * 60.02443 * 7 6 5 10 10 C 1.50690 * 109.47527 * 300.02305 * 7 6 5 11 11 O 1.21298 * 119.99979 * 24.29669 * 10 7 6 12 12 N 1.34783 * 120.00185 * 204.29835 * 10 7 6 13 13 C 1.37101 * 119.99978 * 174.46815 * 12 10 7 14 14 H 1.08000 * 119.99923 * 151.85235 * 13 12 10 15 15 C 1.38955 * 119.99901 * 331.84372 * 13 12 10 16 16 N 1.31412 * 119.99662 * 110.58959 * 15 13 12 17 17 Si 1.86792 * 120.00158 * 290.59095 * 15 13 12 18 18 H 1.48503 * 109.47322 * 89.99901 * 17 15 13 19 19 H 1.48502 * 109.47036 * 209.99784 * 17 15 13 20 20 H 1.48501 * 109.47313 * 330.00075 * 17 15 13 21 21 C 1.46498 * 119.99612 * 354.46091 * 12 10 7 22 22 C 1.53009 * 109.46747 * 91.83034 * 21 12 10 23 23 C 1.50701 * 109.46935 * 179.97438 * 22 21 12 24 24 O 1.20825 * 119.99989 * 359.97438 * 23 22 21 25 25 O 1.34223 * 119.99978 * 179.97438 * 23 22 21 26 26 C 1.45195 * 117.00172 * 179.97438 * 25 23 22 27 27 C 1.38232 * 120.00213 * 359.74509 * 6 5 4 28 28 C 1.38234 * 119.99981 * 89.99955 * 3 2 1 29 29 H 1.08992 * 109.47068 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47336 * 300.00449 * 1 2 3 31 31 H 1.09004 * 109.46931 * 59.99642 * 1 2 3 32 32 H 1.09001 * 109.47178 * 119.99627 * 2 1 3 33 33 H 1.09001 * 109.47167 * 240.00312 * 2 1 3 34 34 H 1.08003 * 119.99985 * 0.02562 * 4 3 2 35 35 H 1.08002 * 120.00238 * 180.23037 * 5 4 3 36 36 H 1.08999 * 109.47157 * 55.36646 * 9 7 6 37 37 H 1.09002 * 109.46947 * 175.36084 * 9 7 6 38 38 H 1.08996 * 109.47376 * 295.36130 * 9 7 6 39 39 H 0.96995 * 120.00050 * 184.94592 * 16 15 13 40 40 H 1.09001 * 109.46950 * 211.82078 * 21 12 10 41 41 H 1.08997 * 109.47409 * 331.82891 * 21 12 10 42 42 H 1.08995 * 109.46961 * 299.99421 * 22 21 12 43 43 H 1.08999 * 109.46765 * 59.99773 * 22 21 12 44 44 H 1.08999 * 109.46833 * 60.00622 * 26 25 23 45 45 H 1.09003 * 109.47349 * 180.02562 * 26 25 23 46 46 H 1.09000 * 109.47807 * 300.00682 * 26 25 23 47 47 H 1.07999 * 120.00574 * 179.97438 * 27 6 5 48 48 H 1.08007 * 119.99870 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3755 -1.1971 6 6 2.9547 4.0271 0.0000 7 6 3.4580 5.4476 0.0000 8 1 3.5794 5.7900 1.0277 9 6 2.4507 6.3455 -0.7213 10 6 4.7855 5.5102 -0.7104 11 8 5.0751 4.6645 -1.5302 12 7 5.6510 6.5060 -0.4348 13 6 6.9023 6.5012 -0.9950 14 1 7.4187 7.4333 -1.1711 15 6 7.5063 5.2972 -1.3360 16 7 7.6787 4.9836 -2.6004 17 14 8.0730 4.1244 0.0029 18 1 6.9699 3.1895 0.3416 19 1 9.2459 3.3519 -0.4797 20 1 8.4536 4.8992 1.2112 21 6 5.2545 7.5935 0.4632 22 6 5.6591 7.2441 1.8968 23 6 5.2518 8.3631 2.8205 24 8 4.6955 9.3399 2.3775 25 8 5.5071 8.2745 4.1353 26 6 5.0872 9.3897 4.9649 27 6 2.7239 3.3757 1.1972 28 6 2.2627 2.0725 1.1971 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 2.0920 1.5601 -2.1324 35 1 2.9050 3.8844 -2.1324 36 1 1.4702 6.2372 -0.2576 37 1 2.7736 7.3841 -0.6499 38 1 2.3908 6.0549 -1.7701 39 1 8.0341 4.1135 -2.8402 40 1 5.7517 8.5148 0.1597 41 1 4.1743 7.7301 0.4135 42 1 5.1620 6.3229 2.2004 43 1 6.7394 7.1075 1.9464 44 1 4.0076 9.5163 4.8841 45 1 5.3533 9.1907 6.0030 46 1 5.5857 10.2995 4.6304 47 1 2.9043 3.8846 2.1325 48 1 2.0831 1.5632 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871341520.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:08 Heat of formation + Delta-G solvation = -102.527410 kcal Electronic energy + Delta-G solvation = -29591.241812 eV Core-core repulsion = 25611.193978 eV Total energy + Delta-G solvation = -3980.047834 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.58667 -41.02690 -39.76398 -37.63079 -36.48517 -35.87828 -34.66318 -33.23864 -32.07076 -31.74594 -29.44339 -28.61570 -27.09997 -25.85373 -24.88240 -23.63109 -23.41149 -21.91684 -21.53247 -20.65237 -19.04513 -18.45784 -17.71397 -17.53108 -17.21501 -17.03672 -16.74788 -16.32000 -16.05194 -15.61948 -15.41541 -14.97303 -14.69322 -14.65878 -14.53832 -14.42953 -14.20366 -14.17452 -13.90321 -13.72055 -13.56108 -13.22168 -13.11403 -12.92801 -12.84119 -12.67741 -12.54799 -12.41795 -12.31111 -12.05076 -11.95677 -11.89454 -11.73935 -11.59962 -11.57508 -11.52556 -10.73479 -9.98631 -9.72725 -9.54911 -9.27505 -8.82765 -5.55215 0.47867 0.60482 1.16455 1.23386 1.39954 1.43004 1.70547 2.16993 2.37964 2.58466 2.87446 3.27299 3.75977 3.77407 3.93495 3.95195 4.01847 4.10547 4.17032 4.20247 4.34012 4.36290 4.38049 4.40201 4.44392 4.48806 4.55690 4.65361 4.73678 4.74682 4.76391 4.81992 4.88960 4.94994 5.03668 5.09363 5.11154 5.21047 5.25915 5.31118 5.38085 5.40994 5.46347 5.59378 5.77732 5.84959 6.08685 6.21416 6.72427 6.86515 7.26793 7.58971 8.24128 8.35424 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009232 B = 0.004457 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.348717 B = 6280.206983 C = 7915.818252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.082 4.082 3 C -0.092 4.092 4 C -0.138 4.138 5 C -0.091 4.091 6 C -0.084 4.084 7 C -0.062 4.062 8 H 0.101 0.899 9 C -0.129 4.129 10 C 0.434 3.566 11 O -0.589 6.589 12 N -0.438 5.438 13 C -0.500 4.500 14 H 0.072 0.928 15 C 0.173 3.827 16 N -0.749 5.749 17 Si 0.830 3.170 18 H -0.289 1.289 19 H -0.281 1.281 20 H -0.246 1.246 21 C 0.119 3.881 22 C -0.130 4.130 23 C 0.478 3.522 24 O -0.531 6.531 25 O -0.365 6.365 26 C 0.027 3.973 27 C -0.123 4.123 28 C -0.128 4.128 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.125 0.875 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.044 0.956 39 H 0.279 0.721 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.113 0.887 43 H 0.109 0.891 44 H 0.066 0.934 45 H 0.131 0.869 46 H 0.061 0.939 47 H 0.138 0.862 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.280 -2.286 13.615 18.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 C -0.092 4.092 4 C -0.156 4.156 5 C -0.109 4.109 6 C -0.085 4.085 7 C -0.084 4.084 8 H 0.119 0.881 9 C -0.186 4.186 10 C 0.225 3.775 11 O -0.473 6.473 12 N -0.158 5.158 13 C -0.617 4.617 14 H 0.089 0.911 15 C -0.053 4.053 16 N -0.372 5.372 17 Si 0.650 3.350 18 H -0.216 1.216 19 H -0.206 1.206 20 H -0.169 1.169 21 C -0.005 4.005 22 C -0.169 4.169 23 C 0.322 3.678 24 O -0.420 6.420 25 O -0.282 6.282 26 C -0.066 4.066 27 C -0.141 4.141 28 C -0.146 4.146 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.143 0.857 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.131 0.869 43 H 0.127 0.873 44 H 0.085 0.915 45 H 0.149 0.851 46 H 0.080 0.920 47 H 0.156 0.844 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.162 -2.387 12.856 17.858 hybrid contribution 0.955 -0.243 0.076 0.989 sum -11.207 -2.630 12.932 17.313 Atomic orbital electron populations 1.21703 0.93622 1.02450 1.01965 1.20569 0.97017 0.91009 1.03293 1.20178 0.98915 0.97344 0.92724 1.21169 1.01255 0.94593 0.98581 1.20976 0.96881 0.95355 0.97716 1.19587 0.99622 0.95282 0.93969 1.20228 0.93135 0.94036 1.00980 0.88094 1.21720 0.98403 0.98507 0.99974 1.20665 0.86104 0.84942 0.85801 1.90562 1.77977 1.41306 1.37418 1.43451 1.11027 1.21868 1.39464 1.17882 0.96609 0.92735 1.54435 0.91060 1.25327 0.89857 0.95947 0.94153 1.70632 1.25059 1.20531 1.20945 0.87604 0.78373 0.81521 0.87539 1.21578 1.20612 1.16928 1.21481 1.00857 0.91228 0.86939 1.21906 1.05473 0.96416 0.93079 1.23662 0.74690 0.87367 0.82116 1.90639 1.40466 1.33638 1.77279 1.86523 1.74899 1.47264 1.19494 1.23572 1.00987 0.87307 0.94766 1.21276 0.99883 0.95666 0.97251 1.21212 1.00514 0.94470 0.98360 0.90858 0.92410 0.93269 0.89990 0.91128 0.85736 0.88229 0.89628 0.91363 0.93640 0.91034 0.91265 0.89093 0.86889 0.87301 0.91527 0.85110 0.92039 0.84383 0.83666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.89 71.98 0.71 -1.64 16 2 C -0.08 -1.67 6.07 29.85 0.18 -1.48 16 3 C -0.09 -2.55 5.13 -19.87 -0.10 -2.65 16 4 C -0.14 -4.52 9.70 22.27 0.22 -4.30 16 5 C -0.09 -3.49 7.93 22.27 0.18 -3.31 16 6 C -0.08 -3.05 4.64 -19.87 -0.09 -3.14 16 7 C -0.06 -2.26 2.06 -12.29 -0.03 -2.28 16 8 H 0.10 3.15 5.67 -2.39 -0.01 3.13 16 9 C -0.13 -4.04 8.71 71.98 0.63 -3.41 16 10 C 0.43 20.79 6.23 87.65 0.55 21.34 16 11 O -0.59 -33.48 12.21 -3.08 -0.04 -33.51 16 12 N -0.44 -20.86 2.55 -635.52 -1.62 -22.48 16 13 C -0.50 -27.63 9.32 84.04 0.78 -26.85 16 14 H 0.07 4.12 8.06 -2.91 -0.02 4.10 16 15 C 0.17 9.79 3.16 84.93 0.27 10.06 16 16 N -0.75 -44.00 13.66 21.66 0.30 -43.70 16 17 Si 0.83 41.59 28.86 68.60 1.98 43.57 16 18 H -0.29 -15.55 7.11 99.48 0.71 -14.84 16 19 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 20 H -0.25 -11.41 7.11 99.48 0.71 -10.71 16 21 C 0.12 4.43 4.26 86.38 0.37 4.80 16 22 C -0.13 -4.11 5.98 29.85 0.18 -3.94 16 23 C 0.48 13.90 7.96 71.24 0.57 14.47 16 24 O -0.53 -17.42 15.73 21.97 0.35 -17.07 16 25 O -0.37 -9.08 10.56 -51.35 -0.54 -9.62 16 26 C 0.03 0.46 10.56 113.37 1.20 1.65 16 27 C -0.12 -3.74 9.67 22.27 0.22 -3.52 16 28 C -0.13 -3.45 9.70 22.27 0.22 -3.24 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 1.45 8.09 -2.39 -0.02 1.43 16 33 H 0.07 1.42 8.08 -2.39 -0.02 1.40 16 34 H 0.12 3.65 8.06 -2.91 -0.02 3.63 16 35 H 0.10 4.27 6.96 -2.91 -0.02 4.25 16 36 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.07 2.04 6.32 -2.39 -0.02 2.02 16 38 H 0.04 1.57 7.56 -2.39 -0.02 1.55 16 39 H 0.28 15.36 8.32 -92.71 -0.77 14.59 16 40 H 0.07 2.69 8.01 -2.39 -0.02 2.67 16 41 H 0.09 3.03 4.82 -2.39 -0.01 3.02 16 42 H 0.11 3.25 7.00 -2.39 -0.02 3.24 16 43 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 44 H 0.07 1.09 8.13 -2.39 -0.02 1.07 16 45 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.06 1.07 8.13 -2.39 -0.02 1.05 16 47 H 0.14 3.45 7.95 -2.91 -0.02 3.42 16 48 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -72.82 393.94 7.40 -65.41 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.95 Total: 24.86 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 6.03 Total: -7.45 kcal Atomic # 7 Polarization: -64.86 SS G_CDS: -1.32 Total: -66.19 kcal Atomic # 8 Polarization: -59.97 SS G_CDS: -0.23 Total: -60.21 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 1.98 Total: 43.57 kcal Total: -72.82 7.40 -65.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871341520.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.114 kcal (2) G-P(sol) polarization free energy of solvation -72.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds