Wall clock time and date at job start Tue Mar 31 2020 17:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34229 * 116.99915 * 2 1 4 4 O 1.20822 * 120.00102 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99855 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47230 * 179.97438 * 5 3 2 7 7 N 1.46500 * 109.47198 * 180.02562 * 6 5 3 8 8 C 1.37098 * 119.99436 * 265.98112 * 7 6 5 9 9 H 1.07999 * 120.00153 * 138.28857 * 8 7 6 10 10 C 1.38955 * 119.99873 * 318.27592 * 8 7 6 11 11 N 1.31411 * 119.99752 * 157.78478 * 10 8 7 12 12 Si 1.86803 * 119.99997 * 337.78810 * 10 8 7 13 13 H 1.48500 * 109.46886 * 95.19635 * 12 10 8 14 14 H 1.48500 * 109.46629 * 215.19112 * 12 10 8 15 15 H 1.48495 * 109.47219 * 335.19435 * 12 10 8 16 16 C 1.34777 * 120.00586 * 85.97391 * 7 6 5 17 17 O 1.21297 * 119.99470 * 4.59049 * 16 7 6 18 18 C 1.50692 * 120.00298 * 184.58743 * 16 7 6 19 19 H 1.09001 * 109.47312 * 34.19689 * 18 16 7 20 20 C 1.52996 * 109.47259 * 274.19657 * 18 16 7 21 21 C 1.52998 * 109.47097 * 154.19521 * 18 16 7 22 22 C 1.50700 * 109.47182 * 184.99783 * 21 18 16 23 23 C 1.38241 * 119.99685 * 90.00464 * 22 21 18 24 24 C 1.38237 * 119.99814 * 180.02562 * 23 22 21 25 25 C 1.38233 * 119.99914 * 0.25092 * 24 23 22 26 26 C 1.50701 * 119.99942 * 179.72713 * 25 24 23 27 27 C 1.38243 * 120.00099 * 359.46911 * 25 24 23 28 28 C 1.38231 * 119.99892 * 0.53433 * 27 25 24 29 29 H 1.08997 * 109.47048 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46906 * 300.00211 * 1 2 3 31 31 H 1.08998 * 109.46717 * 60.00120 * 1 2 3 32 32 H 1.08998 * 109.47110 * 59.99654 * 5 3 2 33 33 H 1.09001 * 109.46851 * 299.99897 * 5 3 2 34 34 H 1.08998 * 109.47276 * 59.99854 * 6 5 3 35 35 H 1.09006 * 109.46738 * 299.99865 * 6 5 3 36 36 H 0.96999 * 119.99539 * 179.97438 * 11 10 8 37 37 H 1.09003 * 109.47379 * 177.18682 * 20 18 16 38 38 H 1.08998 * 109.47350 * 297.19189 * 20 18 16 39 39 H 1.09009 * 109.47000 * 57.18701 * 20 18 16 40 40 H 1.09004 * 109.47113 * 65.00514 * 21 18 16 41 41 H 1.08996 * 109.47557 * 305.00433 * 21 18 16 42 42 H 1.07994 * 120.00044 * 359.97438 * 23 22 21 43 43 H 1.07998 * 119.99495 * 179.97438 * 24 23 22 44 44 H 1.09004 * 109.46917 * 89.99830 * 26 25 24 45 45 H 1.09001 * 109.47047 * 209.99808 * 26 25 24 46 46 H 1.09001 * 109.47052 * 330.00383 * 26 25 24 47 47 H 1.07996 * 119.99947 * 180.29745 * 27 25 24 48 48 H 1.07998 * 120.00239 * 179.76798 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7420 -0.0011 7 7 5.4632 2.8187 -0.0023 8 6 6.1442 2.9378 1.1816 9 1 7.0499 2.3719 1.3429 10 6 5.6694 3.7868 2.1739 11 7 6.0258 3.5994 3.4248 12 14 4.5245 5.1943 1.7296 13 1 3.1157 4.7661 1.9223 14 1 4.8113 6.3602 2.6035 15 1 4.7363 5.5756 0.3102 16 6 6.1396 2.7720 -1.1671 17 8 5.5355 2.7505 -2.2187 18 6 7.6463 2.7465 -1.1630 19 1 7.9980 2.1889 -0.2949 20 6 8.1805 4.1788 -1.0995 21 6 8.1485 2.0711 -2.4407 22 6 9.6481 1.9351 -2.3809 23 6 10.2180 0.8009 -1.8334 24 6 11.5937 0.6764 -1.7781 25 6 12.3994 1.6883 -2.2657 26 6 13.8991 1.5553 -2.1998 27 6 11.8295 2.8200 -2.8185 28 6 10.4539 2.9445 -2.8737 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.9557 0.7809 -0.8908 33 1 3.9564 0.7806 0.8892 34 1 3.6108 3.2364 0.8889 35 1 3.6101 3.2359 -0.8911 36 1 5.6946 4.1923 4.1174 37 1 9.2690 4.1587 -1.0462 38 1 7.8704 4.7221 -1.9922 39 1 7.7824 4.6762 -0.2150 40 1 7.8727 2.6765 -3.3042 41 1 7.6973 1.0830 -2.5307 42 1 9.5886 0.0125 -1.4480 43 1 12.0388 -0.2095 -1.3499 44 1 14.2616 1.0764 -3.1095 45 1 14.3478 2.5442 -2.1062 46 1 14.1725 0.9489 -1.3363 47 1 12.4589 3.6084 -3.2038 48 1 10.0086 3.8302 -3.3022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871342827.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:21 Heat of formation + Delta-G solvation = -107.940823 kcal Electronic energy + Delta-G solvation = -28847.344984 eV Core-core repulsion = 24867.062407 eV Total energy + Delta-G solvation = -3980.282577 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.24090 -39.62818 -38.83383 -36.39279 -35.37967 -34.61811 -32.38793 -31.92931 -30.81583 -30.69740 -28.07457 -27.56028 -25.31120 -24.89979 -24.32535 -22.56811 -21.80722 -20.57959 -20.15601 -18.87791 -17.52749 -16.78990 -16.45557 -16.37785 -16.22620 -15.63107 -15.34894 -15.06313 -14.84470 -14.26249 -14.12731 -13.82982 -13.74150 -13.36562 -13.28060 -13.16275 -12.74940 -12.67883 -12.50897 -12.36208 -12.23128 -12.03455 -11.94869 -11.76268 -11.62842 -11.40961 -11.09000 -10.94639 -10.83904 -10.71524 -10.66512 -10.46166 -10.38120 -10.23032 -10.07339 -9.96383 -9.23468 -8.76301 -8.59765 -8.24779 -7.85699 -6.53667 -4.18169 1.49194 1.56582 2.49967 2.89844 3.09751 3.24013 3.33214 3.66807 3.88026 4.12211 4.33992 4.84196 4.91510 4.92342 5.10217 5.15767 5.16039 5.22199 5.22833 5.27887 5.49711 5.52168 5.53010 5.54986 5.62194 5.65729 5.70362 5.77101 5.83138 5.86232 6.02945 6.12305 6.17393 6.20215 6.31314 6.35690 6.38791 6.46178 6.53411 6.59524 6.64717 6.70718 6.74456 6.85808 6.95090 7.18870 7.30059 7.99199 8.03115 8.17462 8.89989 9.26696 9.59689 10.55993 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013131 B = 0.003147 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.780720 B = 8893.925135 C =10007.076911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.467 3.533 4 O -0.511 6.511 5 C -0.122 4.122 6 C 0.115 3.885 7 N -0.465 5.465 8 C -0.351 4.351 9 H 0.107 0.893 10 C 0.076 3.924 11 N -0.855 5.855 12 Si 0.860 3.140 13 H -0.269 1.269 14 H -0.285 1.285 15 H -0.259 1.259 16 C 0.492 3.508 17 O -0.594 6.594 18 C -0.083 4.083 19 H 0.095 0.905 20 C -0.135 4.135 21 C -0.065 4.065 22 C -0.071 4.071 23 C -0.112 4.112 24 C -0.120 4.120 25 C -0.101 4.101 26 C -0.111 4.111 27 C -0.122 4.122 28 C -0.111 4.111 29 H 0.097 0.903 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.276 0.724 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.121 0.879 43 H 0.117 0.883 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.117 0.883 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.598 -5.878 -7.514 11.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.310 3.690 4 O -0.398 6.398 5 C -0.161 4.161 6 C -0.008 4.008 7 N -0.185 5.185 8 C -0.477 4.477 9 H 0.124 0.876 10 C -0.133 4.133 11 N -0.489 5.489 12 Si 0.686 3.314 13 H -0.196 1.196 14 H -0.212 1.212 15 H -0.183 1.183 16 C 0.282 3.718 17 O -0.479 6.479 18 C -0.104 4.104 19 H 0.113 0.887 20 C -0.192 4.192 21 C -0.102 4.102 22 C -0.071 4.071 23 C -0.130 4.130 24 C -0.138 4.138 25 C -0.101 4.101 26 C -0.168 4.168 27 C -0.140 4.140 28 C -0.129 4.129 29 H 0.116 0.884 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.124 0.876 33 H 0.132 0.868 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.140 0.860 43 H 0.135 0.865 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.135 0.865 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.058 -5.524 -7.794 10.810 hybrid contribution -0.893 0.810 0.241 1.229 sum 4.165 -4.715 -7.553 9.830 Atomic orbital electron populations 1.23200 0.77105 1.03233 1.02389 1.86537 1.22930 1.34036 1.84440 1.24030 0.92341 0.81010 0.71591 1.90646 1.67376 1.36346 1.45464 1.21811 0.86085 1.01932 1.06247 1.21380 0.83471 0.92999 1.02985 1.43696 1.03507 1.65026 1.06297 1.18991 1.11531 1.26787 0.90416 0.87601 1.25317 0.96532 0.96820 0.94618 1.69766 1.43348 1.36265 0.99522 0.87137 0.81223 0.82966 0.80030 1.19569 1.21176 1.18285 1.20554 0.89659 0.78432 0.83202 1.90548 1.70723 1.54978 1.31601 1.20935 0.92585 0.98602 0.98311 0.88677 1.21660 1.00348 0.94815 1.02408 1.20492 0.89671 1.01629 0.98457 1.19978 0.95974 0.93946 0.97226 1.21081 0.94733 0.97893 0.99330 1.20971 0.93572 0.98545 1.00686 1.19846 0.95721 0.94864 0.99632 1.20750 0.91759 1.02296 1.01978 1.20967 0.94892 0.97550 1.00559 1.21073 0.93258 0.98566 0.99969 0.88421 0.92077 0.92117 0.87637 0.86759 0.90361 0.90600 0.91419 0.92407 0.93327 0.91056 0.90445 0.91149 0.86050 0.86454 0.91618 0.91816 0.91774 0.86522 0.86080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 101.05 1.07 1.48 16 2 O -0.36 -5.65 10.57 -39.25 -0.41 -6.07 16 3 C 0.47 8.55 7.96 36.01 0.29 8.83 16 4 O -0.51 -10.63 15.73 -18.75 -0.29 -10.92 16 5 C -0.12 -2.28 6.11 -27.88 -0.17 -2.45 16 6 C 0.12 2.56 3.37 -4.04 -0.01 2.54 16 7 N -0.46 -10.64 2.09 -114.81 -0.24 -10.88 16 8 C -0.35 -8.56 8.44 -14.93 -0.13 -8.69 16 9 H 0.11 2.68 6.72 -52.49 -0.35 2.33 16 10 C 0.08 1.93 5.25 -17.47 -0.09 1.84 16 11 N -0.85 -22.79 13.96 55.50 0.77 -22.01 16 12 Si 0.86 20.49 25.27 -169.99 -4.30 16.20 16 13 H -0.27 -6.47 6.72 56.52 0.38 -6.09 16 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 16 C 0.49 10.78 6.71 -10.99 -0.07 10.71 16 17 O -0.59 -14.08 15.83 5.54 0.09 -13.99 16 18 C -0.08 -1.54 2.03 -91.78 -0.19 -1.73 16 19 H 0.10 1.82 6.52 -51.93 -0.34 1.48 16 20 C -0.13 -2.38 8.61 37.16 0.32 -2.06 16 21 C -0.06 -1.04 4.29 -27.88 -0.12 -1.16 16 22 C -0.07 -1.03 4.71 -104.62 -0.49 -1.52 16 23 C -0.11 -1.52 9.70 -39.58 -0.38 -1.91 16 24 C -0.12 -1.47 9.70 -39.58 -0.38 -1.85 16 25 C -0.10 -1.18 5.88 -104.62 -0.62 -1.80 16 26 C -0.11 -0.98 10.01 36.01 0.36 -0.62 16 27 C -0.12 -1.47 9.70 -39.58 -0.38 -1.85 16 28 C -0.11 -1.47 8.04 -39.58 -0.32 -1.79 16 29 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.72 8.13 -51.93 -0.42 0.29 16 31 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 32 H 0.11 1.87 8.14 -51.93 -0.42 1.45 16 33 H 0.11 2.06 8.14 -51.93 -0.42 1.64 16 34 H 0.08 1.85 4.00 -51.93 -0.21 1.64 16 35 H 0.08 1.75 7.44 -51.93 -0.39 1.36 16 36 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 37 H 0.06 0.91 6.45 -51.93 -0.34 0.58 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 1.40 7.62 -51.92 -0.40 1.01 16 40 H 0.08 1.28 7.97 -51.93 -0.41 0.86 16 41 H 0.07 1.13 8.09 -51.93 -0.42 0.71 16 42 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 43 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 46 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 47 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 48 H 0.12 1.50 8.04 -52.49 -0.42 1.08 16 LS Contribution 393.92 15.07 5.94 5.94 Total: -1.00 -29.84 393.92 -7.27 -37.11 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -7.50 Total: 6.67 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -1.33 Total: -2.03 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.53 Total: -32.90 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -0.62 Total: -30.98 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.30 Total: 16.20 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.84 -7.27 -37.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342827.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.833 kcal (2) G-P(sol) polarization free energy of solvation -29.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds