Wall clock time and date at job start Tue Mar 31 2020 17:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34229 * 116.99915 * 2 1 4 4 O 1.20822 * 120.00102 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99855 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47230 * 179.97438 * 5 3 2 7 7 N 1.46500 * 109.47198 * 180.02562 * 6 5 3 8 8 C 1.37098 * 119.99436 * 265.98112 * 7 6 5 9 9 H 1.07999 * 120.00153 * 138.28857 * 8 7 6 10 10 C 1.38955 * 119.99873 * 318.27592 * 8 7 6 11 11 N 1.31411 * 119.99752 * 157.78478 * 10 8 7 12 12 Si 1.86803 * 119.99997 * 337.78810 * 10 8 7 13 13 H 1.48500 * 109.46886 * 95.19635 * 12 10 8 14 14 H 1.48500 * 109.46629 * 215.19112 * 12 10 8 15 15 H 1.48495 * 109.47219 * 335.19435 * 12 10 8 16 16 C 1.34777 * 120.00586 * 85.97391 * 7 6 5 17 17 O 1.21297 * 119.99470 * 4.59049 * 16 7 6 18 18 C 1.50692 * 120.00298 * 184.58743 * 16 7 6 19 19 H 1.09001 * 109.47312 * 34.19689 * 18 16 7 20 20 C 1.52996 * 109.47259 * 274.19657 * 18 16 7 21 21 C 1.52998 * 109.47097 * 154.19521 * 18 16 7 22 22 C 1.50700 * 109.47182 * 184.99783 * 21 18 16 23 23 C 1.38241 * 119.99685 * 90.00464 * 22 21 18 24 24 C 1.38237 * 119.99814 * 180.02562 * 23 22 21 25 25 C 1.38233 * 119.99914 * 0.25092 * 24 23 22 26 26 C 1.50701 * 119.99942 * 179.72713 * 25 24 23 27 27 C 1.38243 * 120.00099 * 359.46911 * 25 24 23 28 28 C 1.38231 * 119.99892 * 0.53433 * 27 25 24 29 29 H 1.08997 * 109.47048 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46906 * 300.00211 * 1 2 3 31 31 H 1.08998 * 109.46717 * 60.00120 * 1 2 3 32 32 H 1.08998 * 109.47110 * 59.99654 * 5 3 2 33 33 H 1.09001 * 109.46851 * 299.99897 * 5 3 2 34 34 H 1.08998 * 109.47276 * 59.99854 * 6 5 3 35 35 H 1.09006 * 109.46738 * 299.99865 * 6 5 3 36 36 H 0.96999 * 119.99539 * 179.97438 * 11 10 8 37 37 H 1.09003 * 109.47379 * 177.18682 * 20 18 16 38 38 H 1.08998 * 109.47350 * 297.19189 * 20 18 16 39 39 H 1.09009 * 109.47000 * 57.18701 * 20 18 16 40 40 H 1.09004 * 109.47113 * 65.00514 * 21 18 16 41 41 H 1.08996 * 109.47557 * 305.00433 * 21 18 16 42 42 H 1.07994 * 120.00044 * 359.97438 * 23 22 21 43 43 H 1.07998 * 119.99495 * 179.97438 * 24 23 22 44 44 H 1.09004 * 109.46917 * 89.99830 * 26 25 24 45 45 H 1.09001 * 109.47047 * 209.99808 * 26 25 24 46 46 H 1.09001 * 109.47052 * 330.00383 * 26 25 24 47 47 H 1.07996 * 119.99947 * 180.29745 * 27 25 24 48 48 H 1.07998 * 120.00239 * 179.76798 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7420 -0.0011 7 7 5.4632 2.8187 -0.0023 8 6 6.1442 2.9378 1.1816 9 1 7.0499 2.3719 1.3429 10 6 5.6694 3.7868 2.1739 11 7 6.0258 3.5994 3.4248 12 14 4.5245 5.1943 1.7296 13 1 3.1157 4.7661 1.9223 14 1 4.8113 6.3602 2.6035 15 1 4.7363 5.5756 0.3102 16 6 6.1396 2.7720 -1.1671 17 8 5.5355 2.7505 -2.2187 18 6 7.6463 2.7465 -1.1630 19 1 7.9980 2.1889 -0.2949 20 6 8.1805 4.1788 -1.0995 21 6 8.1485 2.0711 -2.4407 22 6 9.6481 1.9351 -2.3809 23 6 10.2180 0.8009 -1.8334 24 6 11.5937 0.6764 -1.7781 25 6 12.3994 1.6883 -2.2657 26 6 13.8991 1.5553 -2.1998 27 6 11.8295 2.8200 -2.8185 28 6 10.4539 2.9445 -2.8737 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.9557 0.7809 -0.8908 33 1 3.9564 0.7806 0.8892 34 1 3.6108 3.2364 0.8889 35 1 3.6101 3.2359 -0.8911 36 1 5.6946 4.1923 4.1174 37 1 9.2690 4.1587 -1.0462 38 1 7.8704 4.7221 -1.9922 39 1 7.7824 4.6762 -0.2150 40 1 7.8727 2.6765 -3.3042 41 1 7.6973 1.0830 -2.5307 42 1 9.5886 0.0125 -1.4480 43 1 12.0388 -0.2095 -1.3499 44 1 14.2616 1.0764 -3.1095 45 1 14.3478 2.5442 -2.1062 46 1 14.1725 0.9489 -1.3363 47 1 12.4589 3.6084 -3.2038 48 1 10.0086 3.8302 -3.3022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871342827.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:20 Heat of formation + Delta-G solvation = -122.115120 kcal Electronic energy + Delta-G solvation = -28847.959628 eV Core-core repulsion = 24867.062407 eV Total energy + Delta-G solvation = -3980.897221 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.69744 -41.03922 -40.13584 -37.79638 -37.04593 -36.06070 -34.22168 -33.25553 -32.25678 -31.72740 -29.17300 -28.71363 -26.94542 -26.47607 -25.70321 -23.58822 -23.13911 -21.91702 -21.39726 -20.67336 -19.04120 -18.41352 -18.18592 -17.80620 -17.61882 -16.88634 -16.61029 -16.39385 -16.00279 -15.90051 -15.71758 -15.23621 -14.84063 -14.76671 -14.47031 -14.41186 -14.18559 -14.16669 -13.93658 -13.75456 -13.49023 -13.31170 -13.13876 -13.03344 -12.84802 -12.81642 -12.74539 -12.68656 -12.15631 -11.97690 -11.92939 -11.82894 -11.80895 -11.72253 -11.70036 -11.58661 -11.14533 -10.41894 -9.76224 -9.71000 -9.26477 -8.54022 -6.16981 0.50212 0.59715 1.04436 1.16921 1.28527 1.38100 1.55940 1.89092 2.15975 2.59738 2.89315 2.96995 3.68817 3.81692 3.91297 3.96308 4.05627 4.13080 4.17318 4.24920 4.27375 4.28037 4.28874 4.36397 4.41693 4.54931 4.60128 4.65788 4.68171 4.72795 4.84008 4.84366 4.90466 4.93785 4.98751 4.99402 5.09323 5.24643 5.26122 5.31767 5.36159 5.41748 5.43679 5.61730 5.79145 5.85902 6.09222 6.21053 6.23417 6.60628 6.95077 7.38035 7.73551 8.59193 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013131 B = 0.003147 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.780720 B = 8893.925135 C =10007.076911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.360 6.360 3 C 0.474 3.526 4 O -0.541 6.541 5 C -0.114 4.114 6 C 0.114 3.886 7 N -0.474 5.474 8 C -0.333 4.333 9 H 0.096 0.904 10 C 0.049 3.951 11 N -0.885 5.885 12 Si 0.898 3.102 13 H -0.274 1.274 14 H -0.279 1.279 15 H -0.271 1.271 16 C 0.489 3.511 17 O -0.611 6.611 18 C -0.078 4.078 19 H 0.089 0.911 20 C -0.127 4.127 21 C -0.052 4.052 22 C -0.090 4.090 23 C -0.125 4.125 24 C -0.127 4.127 25 C -0.102 4.102 26 C -0.110 4.110 27 C -0.127 4.127 28 C -0.119 4.119 29 H 0.138 0.862 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.116 0.884 33 H 0.122 0.878 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.279 0.721 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.047 0.953 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.124 0.876 43 H 0.137 0.863 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.139 0.861 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.822 -6.763 -8.227 12.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.276 6.276 3 C 0.318 3.682 4 O -0.431 6.431 5 C -0.153 4.153 6 C -0.010 4.010 7 N -0.195 5.195 8 C -0.461 4.461 9 H 0.114 0.886 10 C -0.157 4.157 11 N -0.521 5.521 12 Si 0.724 3.276 13 H -0.201 1.201 14 H -0.205 1.205 15 H -0.195 1.195 16 C 0.280 3.720 17 O -0.497 6.497 18 C -0.099 4.099 19 H 0.107 0.893 20 C -0.185 4.185 21 C -0.090 4.090 22 C -0.090 4.090 23 C -0.143 4.143 24 C -0.145 4.145 25 C -0.102 4.102 26 C -0.167 4.167 27 C -0.145 4.145 28 C -0.137 4.137 29 H 0.156 0.844 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.134 0.866 33 H 0.140 0.860 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.142 0.858 43 H 0.155 0.845 44 H 0.097 0.903 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.157 0.843 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.276 -6.426 -8.510 12.374 hybrid contribution -1.274 1.004 0.387 1.668 sum 5.002 -5.422 -8.123 10.973 Atomic orbital electron populations 1.23609 0.74593 1.05990 1.02526 1.86509 1.25272 1.32135 1.83652 1.23795 0.92057 0.81386 0.70951 1.90636 1.67916 1.37485 1.47062 1.21621 0.87001 0.99536 1.07106 1.21296 0.83049 0.95172 1.01484 1.43799 1.03853 1.65612 1.06219 1.18873 1.10956 1.25737 0.90502 0.88618 1.25616 0.97499 0.97905 0.94656 1.69793 1.44952 1.37309 1.00066 0.86565 0.80073 0.81894 0.79050 1.20078 1.20480 1.19531 1.21162 0.91075 0.77227 0.82521 1.90531 1.71518 1.55555 1.32057 1.20940 0.90035 0.99403 0.99556 0.89314 1.21600 1.01532 0.93901 1.01437 1.20319 0.91222 1.00841 0.96615 1.19848 0.94765 0.95151 0.99216 1.21230 0.95688 0.97819 0.99550 1.21255 0.93090 0.99562 1.00597 1.20268 0.97435 0.94265 0.98226 1.20808 0.89540 1.03304 1.03015 1.21269 0.94581 0.98360 1.00241 1.21218 0.93999 0.98501 1.00020 0.84368 0.92111 0.91913 0.86591 0.86011 0.91901 0.91944 0.91092 0.90326 0.92832 0.93394 0.91055 0.91545 0.85846 0.84522 0.90305 0.90796 0.90945 0.84300 0.85545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.56 113.37 1.20 1.75 16 2 O -0.36 -10.66 10.57 -51.40 -0.54 -11.20 16 3 C 0.47 17.11 7.96 71.24 0.57 17.68 16 4 O -0.54 -22.53 15.73 21.98 0.35 -22.18 16 5 C -0.11 -4.24 6.11 29.85 0.18 -4.06 16 6 C 0.11 5.10 3.37 86.38 0.29 5.39 16 7 N -0.47 -21.95 2.09 -635.54 -1.33 -23.28 16 8 C -0.33 -16.47 8.44 84.04 0.71 -15.76 16 9 H 0.10 4.92 6.72 -2.91 -0.02 4.90 16 10 C 0.05 2.52 5.25 84.93 0.45 2.96 16 11 N -0.88 -47.49 13.96 21.66 0.30 -47.19 16 12 Si 0.90 42.78 25.27 68.60 1.73 44.51 16 13 H -0.27 -13.20 6.72 99.48 0.67 -12.54 16 14 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 15 H -0.27 -13.28 7.11 99.48 0.71 -12.58 16 16 C 0.49 21.64 6.71 87.65 0.59 22.22 16 17 O -0.61 -29.15 15.83 -3.08 -0.05 -29.20 16 18 C -0.08 -2.91 2.03 -11.54 -0.02 -2.93 16 19 H 0.09 3.42 6.52 -2.39 -0.02 3.40 16 20 C -0.13 -4.46 8.61 71.98 0.62 -3.84 16 21 C -0.05 -1.67 4.29 29.85 0.13 -1.54 16 22 C -0.09 -2.52 4.71 -19.86 -0.09 -2.61 16 23 C -0.12 -3.27 9.70 22.27 0.22 -3.05 16 24 C -0.13 -2.87 9.70 22.27 0.22 -2.65 16 25 C -0.10 -2.13 5.88 -19.86 -0.12 -2.25 16 26 C -0.11 -1.58 10.01 71.24 0.71 -0.87 16 27 C -0.13 -2.76 9.70 22.27 0.22 -2.54 16 28 C -0.12 -3.01 8.04 22.27 0.18 -2.83 16 29 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 31 H 0.06 1.34 8.13 -2.39 -0.02 1.32 16 32 H 0.12 4.06 8.14 -2.39 -0.02 4.04 16 33 H 0.12 4.34 8.14 -2.39 -0.02 4.32 16 34 H 0.06 3.01 4.00 -2.39 -0.01 3.00 16 35 H 0.06 2.94 7.44 -2.38 -0.02 2.92 16 36 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 37 H 0.08 2.41 6.45 -2.39 -0.02 2.40 16 38 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.05 1.89 7.62 -2.38 -0.02 1.87 16 40 H 0.07 2.34 7.97 -2.39 -0.02 2.32 16 41 H 0.07 2.13 8.09 -2.39 -0.02 2.11 16 42 H 0.12 3.06 8.06 -2.91 -0.02 3.03 16 43 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 44 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.07 0.93 8.09 -2.39 -0.02 0.91 16 46 H 0.07 0.93 8.09 -2.39 -0.02 0.91 16 47 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 48 H 0.13 2.96 8.04 -2.91 -0.02 2.93 16 Total: -1.00 -63.79 393.92 7.40 -56.39 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.91 Total: 27.10 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 6.03 Total: 5.06 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: -1.03 Total: -70.47 kcal Atomic # 8 Polarization: -62.34 SS G_CDS: -0.25 Total: -62.59 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.73 Total: 44.51 kcal Total: -63.79 7.40 -56.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342827.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.729 kcal (2) G-P(sol) polarization free energy of solvation -63.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds