Wall clock time and date at job start Tue Mar 31 2020 17:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34236 * 117.00028 * 2 1 4 4 O 1.20820 * 119.99499 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99969 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47042 * 179.97438 * 5 3 2 7 7 N 1.46500 * 109.47439 * 179.97438 * 6 5 3 8 8 C 1.37105 * 119.99956 * 263.62466 * 7 6 5 9 9 H 1.08003 * 119.99802 * 142.24736 * 8 7 6 10 10 C 1.38951 * 119.99866 * 322.24930 * 8 7 6 11 11 N 1.31411 * 119.99835 * 157.64141 * 10 8 7 12 12 Si 1.86800 * 119.99909 * 337.63746 * 10 8 7 13 13 H 1.48502 * 109.46764 * 95.70896 * 12 10 8 14 14 H 1.48506 * 109.47018 * 215.70527 * 12 10 8 15 15 H 1.48502 * 109.47351 * 335.71022 * 12 10 8 16 16 C 1.34770 * 119.99998 * 83.62016 * 7 6 5 17 17 O 1.21298 * 120.00291 * 359.97438 * 16 7 6 18 18 C 1.50704 * 120.00376 * 180.02562 * 16 7 6 19 19 C 1.53000 * 109.47456 * 179.97438 * 18 16 7 20 20 C 1.50694 * 109.47069 * 179.97438 * 19 18 16 21 21 C 1.38231 * 120.00408 * 269.72727 * 20 19 18 22 22 C 1.38236 * 120.00212 * 179.76894 * 21 20 19 23 23 C 1.50707 * 119.99850 * 180.23147 * 22 21 20 24 24 C 1.38234 * 119.99825 * 0.50355 * 22 21 20 25 25 C 1.38228 * 120.00023 * 359.74743 * 24 22 21 26 26 C 1.50703 * 120.00156 * 179.97438 * 25 24 22 27 27 C 1.38234 * 119.99764 * 89.99975 * 20 19 18 28 28 H 1.09003 * 109.46963 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47149 * 300.00398 * 1 2 3 30 30 H 1.09000 * 109.47089 * 60.00847 * 1 2 3 31 31 H 1.08994 * 109.47659 * 59.99088 * 5 3 2 32 32 H 1.09006 * 109.46976 * 299.99367 * 5 3 2 33 33 H 1.09002 * 109.47061 * 59.99503 * 6 5 3 34 34 H 1.08999 * 109.47158 * 300.00086 * 6 5 3 35 35 H 0.97000 * 120.00002 * 179.97438 * 11 10 8 36 36 H 1.09002 * 109.46831 * 59.99554 * 18 16 7 37 37 H 1.08998 * 109.46763 * 299.99973 * 18 16 7 38 38 H 1.09001 * 109.46814 * 59.99549 * 19 18 16 39 39 H 1.09001 * 109.46963 * 300.00273 * 19 18 16 40 40 H 1.08005 * 119.99402 * 0.02562 * 21 20 19 41 41 H 1.09000 * 109.47078 * 270.27194 * 23 22 21 42 42 H 1.08998 * 109.46990 * 30.27152 * 23 22 21 43 43 H 1.09000 * 109.46542 * 150.27722 * 23 22 21 44 44 H 1.08004 * 119.99452 * 179.72518 * 24 22 21 45 45 H 1.08992 * 109.47533 * 270.02580 * 26 25 24 46 46 H 1.09003 * 109.46795 * 30.02895 * 26 25 24 47 47 H 1.08998 * 109.46996 * 150.02480 * 26 25 24 48 48 H 1.07998 * 120.00075 * 0.02562 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 7 5.4631 2.8189 -0.0011 8 6 6.1407 2.9869 1.1789 9 1 7.0792 2.4772 1.3400 10 6 5.6200 3.8129 2.1675 11 7 5.9900 3.6542 3.4185 12 14 4.3943 5.1490 1.7183 13 1 3.0134 4.6451 1.9294 14 1 4.6233 6.3395 2.5760 15 1 4.5717 5.5245 0.2925 16 6 6.1429 2.7242 -1.1609 17 8 5.5435 2.5750 -2.2048 18 6 7.6479 2.8026 -1.1609 19 6 8.1657 2.6682 -2.5943 20 6 9.6706 2.7472 -2.5943 21 6 10.2985 3.9707 -2.7338 22 6 11.6789 4.0437 -2.7290 23 6 12.3634 5.3783 -2.8759 24 6 12.4315 2.8919 -2.5950 25 6 11.8036 1.6678 -2.4607 26 6 12.6240 0.4121 -2.3152 27 6 10.4231 1.5954 -2.4603 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8901 31 1 3.9558 0.7809 -0.8907 32 1 3.9564 0.7807 0.8893 33 1 3.6106 3.2365 0.8889 34 1 3.6101 3.2360 -0.8910 35 1 5.6268 4.2311 4.1085 36 1 8.0537 1.9954 -0.5511 37 1 7.9617 3.7619 -0.7493 38 1 7.7598 3.4752 -3.2043 39 1 7.8518 1.7088 -3.0055 40 1 9.7105 4.8701 -2.8425 41 1 12.5339 5.5849 -3.9325 42 1 11.7329 6.1588 -2.4502 43 1 13.3186 5.3563 -2.3513 44 1 13.5100 2.9485 -2.5957 45 1 12.8275 -0.0053 -3.3013 46 1 13.5655 0.6486 -1.8194 47 1 12.0724 -0.3153 -1.7197 48 1 9.9326 0.6389 -2.3561 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871343086.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:34 Heat of formation + Delta-G solvation = -112.586258 kcal Electronic energy + Delta-G solvation = -28272.726349 eV Core-core repulsion = 24292.242331 eV Total energy + Delta-G solvation = -3980.484019 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.23023 -39.59077 -38.82018 -36.36651 -35.25923 -34.03480 -33.44242 -32.32983 -31.16836 -29.78238 -27.67778 -27.23473 -26.58614 -25.14057 -24.81191 -23.01583 -20.63285 -20.56818 -20.02955 -18.98263 -17.55326 -16.76334 -16.48078 -16.38346 -16.19903 -15.91400 -15.71378 -15.03102 -14.50740 -14.33211 -14.03983 -13.90748 -13.66876 -13.35143 -13.23488 -12.97986 -12.81349 -12.74369 -12.60293 -12.54198 -12.35056 -12.18145 -12.15199 -11.85828 -11.71919 -11.65748 -11.12396 -11.04115 -10.93500 -10.82721 -10.66021 -10.64370 -10.35717 -10.23461 -10.16240 -9.93838 -9.28487 -8.71401 -8.41436 -8.34242 -7.92685 -6.55716 -4.16742 1.50795 1.52299 2.50382 2.90586 3.08644 3.23323 3.31354 3.67834 3.83415 4.09890 4.35087 4.82185 4.85295 4.87558 4.99428 5.14715 5.16411 5.22584 5.25624 5.35843 5.40809 5.50150 5.53227 5.53602 5.57941 5.59359 5.64886 5.70592 5.72139 5.79271 5.84646 5.88032 6.03187 6.04036 6.23257 6.26146 6.33314 6.38658 6.46500 6.52459 6.63515 6.68352 6.70367 6.71879 6.91866 7.19707 7.25170 7.98300 8.01631 8.17031 8.87814 9.26141 9.59348 10.54218 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012695 B = 0.002903 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.090139 B = 9643.722092 C =10741.940196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.467 3.533 4 O -0.511 6.511 5 C -0.123 4.123 6 C 0.116 3.884 7 N -0.464 5.464 8 C -0.351 4.351 9 H 0.108 0.892 10 C 0.072 3.928 11 N -0.854 5.854 12 Si 0.865 3.135 13 H -0.269 1.269 14 H -0.286 1.286 15 H -0.260 1.260 16 C 0.481 3.519 17 O -0.598 6.598 18 C -0.110 4.110 19 C -0.066 4.066 20 C -0.062 4.062 21 C -0.122 4.122 22 C -0.084 4.084 23 C -0.113 4.113 24 C -0.132 4.132 25 C -0.085 4.085 26 C -0.112 4.112 27 C -0.122 4.122 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.276 0.724 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.121 0.879 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.115 0.885 45 H 0.066 0.934 46 H 0.063 0.937 47 H 0.066 0.934 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.197 -4.512 -8.268 11.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.311 3.689 4 O -0.399 6.399 5 C -0.161 4.161 6 C -0.008 4.008 7 N -0.184 5.184 8 C -0.478 4.478 9 H 0.125 0.875 10 C -0.136 4.136 11 N -0.488 5.488 12 Si 0.692 3.308 13 H -0.195 1.195 14 H -0.212 1.212 15 H -0.184 1.184 16 C 0.272 3.728 17 O -0.483 6.483 18 C -0.150 4.150 19 C -0.104 4.104 20 C -0.062 4.062 21 C -0.140 4.140 22 C -0.084 4.084 23 C -0.169 4.169 24 C -0.150 4.150 25 C -0.085 4.085 26 C -0.169 4.169 27 C -0.140 4.140 28 H 0.116 0.884 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.126 0.874 32 H 0.132 0.868 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.139 0.861 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.133 0.867 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.085 0.915 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.666 -4.222 -8.542 11.086 hybrid contribution -0.894 0.791 0.259 1.222 sum 4.772 -3.431 -8.283 10.156 Atomic orbital electron populations 1.23203 0.77111 1.03234 1.02387 1.86539 1.22925 1.34026 1.84437 1.24032 0.92337 0.81010 0.71565 1.90644 1.67375 1.36357 1.45505 1.21810 0.86094 1.01893 1.06345 1.21395 0.83404 0.93128 1.02864 1.43749 1.03569 1.64339 1.06756 1.19076 1.08731 1.29230 0.90753 0.87479 1.25321 0.96951 0.96731 0.94628 1.69765 1.42839 1.36580 0.99613 0.87097 0.81429 0.82289 0.79997 1.19519 1.21247 1.18379 1.20547 0.89970 0.79481 0.82850 1.90553 1.70991 1.54980 1.31754 1.21318 0.92931 1.04518 0.96187 1.20401 0.89095 1.03658 0.97251 1.20013 0.96100 0.92946 0.97138 1.20951 0.93704 0.97537 1.01796 1.19855 0.93746 0.95273 0.99547 1.20772 1.00264 0.94024 1.01884 1.20791 0.99100 0.91765 1.03308 1.19852 0.93993 0.95043 0.99587 1.20767 0.99239 0.95008 1.01893 1.20935 0.92959 0.98248 1.01877 0.88417 0.92082 0.92112 0.87368 0.86849 0.90343 0.90691 0.91356 0.89661 0.89117 0.90694 0.90715 0.86145 0.91477 0.91484 0.91796 0.86653 0.91483 0.91806 0.91498 0.86165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 101.05 1.07 1.48 16 2 O -0.36 -5.71 10.57 -39.27 -0.41 -6.12 16 3 C 0.47 8.64 7.96 36.00 0.29 8.93 16 4 O -0.51 -10.71 15.73 -18.75 -0.29 -11.00 16 5 C -0.12 -2.32 6.09 -27.89 -0.17 -2.49 16 6 C 0.12 2.59 3.22 -4.04 -0.01 2.58 16 7 N -0.46 -10.74 2.18 -114.81 -0.25 -10.99 16 8 C -0.35 -8.72 9.05 -14.93 -0.14 -8.86 16 9 H 0.11 2.75 7.23 -52.48 -0.38 2.37 16 10 C 0.07 1.86 5.26 -17.47 -0.09 1.77 16 11 N -0.85 -22.93 13.96 55.50 0.77 -22.16 16 12 Si 0.87 20.61 25.05 -169.99 -4.26 16.35 16 13 H -0.27 -6.44 6.69 56.52 0.38 -6.06 16 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.26 -6.30 7.11 56.52 0.40 -5.90 16 16 C 0.48 10.60 7.58 -10.99 -0.08 10.52 16 17 O -0.60 -14.09 15.67 5.54 0.09 -14.00 16 18 C -0.11 -2.04 4.38 -27.88 -0.12 -2.16 16 19 C -0.07 -1.08 4.63 -27.89 -0.13 -1.20 16 20 C -0.06 -0.91 5.13 -104.63 -0.54 -1.45 16 21 C -0.12 -1.71 9.36 -39.58 -0.37 -2.08 16 22 C -0.08 -1.06 5.88 -104.62 -0.62 -1.68 16 23 C -0.11 -1.10 10.01 36.01 0.36 -0.74 16 24 C -0.13 -1.59 9.36 -39.59 -0.37 -1.96 16 25 C -0.08 -1.05 5.88 -104.62 -0.62 -1.67 16 26 C -0.11 -1.07 10.01 36.01 0.36 -0.71 16 27 C -0.12 -1.68 9.36 -39.58 -0.37 -2.05 16 28 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 30 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 31 H 0.11 1.97 8.14 -51.93 -0.42 1.54 16 32 H 0.11 2.07 8.14 -51.93 -0.42 1.65 16 33 H 0.08 1.86 3.61 -51.93 -0.19 1.67 16 34 H 0.07 1.73 7.58 -51.93 -0.39 1.34 16 35 H 0.28 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.09 1.55 7.67 -51.93 -0.40 1.15 16 37 H 0.09 1.72 8.10 -51.93 -0.42 1.30 16 38 H 0.07 1.25 8.04 -51.93 -0.42 0.83 16 39 H 0.07 1.21 8.04 -51.93 -0.42 0.79 16 40 H 0.12 1.58 8.06 -52.48 -0.42 1.16 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 43 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 44 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 47 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 48 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 399.86 15.07 6.03 6.03 Total: -1.00 -30.20 399.86 -7.56 -37.76 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -7.68 Total: 5.92 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -1.55 Total: -1.78 kcal Atomic # 7 Polarization: -33.68 SS G_CDS: 0.52 Total: -33.15 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -0.62 Total: -31.13 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.26 Total: 16.35 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.20 -7.56 -37.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871343086.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.821 kcal (2) G-P(sol) polarization free energy of solvation -30.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds