Wall clock time and date at job start Tue Mar 31 2020 17:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34236 * 117.00028 * 2 1 4 4 O 1.20820 * 119.99499 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99969 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47042 * 179.97438 * 5 3 2 7 7 N 1.46500 * 109.47439 * 179.97438 * 6 5 3 8 8 C 1.37105 * 119.99956 * 263.62466 * 7 6 5 9 9 H 1.08003 * 119.99802 * 142.24736 * 8 7 6 10 10 C 1.38951 * 119.99866 * 322.24930 * 8 7 6 11 11 N 1.31411 * 119.99835 * 157.64141 * 10 8 7 12 12 Si 1.86800 * 119.99909 * 337.63746 * 10 8 7 13 13 H 1.48502 * 109.46764 * 95.70896 * 12 10 8 14 14 H 1.48506 * 109.47018 * 215.70527 * 12 10 8 15 15 H 1.48502 * 109.47351 * 335.71022 * 12 10 8 16 16 C 1.34770 * 119.99998 * 83.62016 * 7 6 5 17 17 O 1.21298 * 120.00291 * 359.97438 * 16 7 6 18 18 C 1.50704 * 120.00376 * 180.02562 * 16 7 6 19 19 C 1.53000 * 109.47456 * 179.97438 * 18 16 7 20 20 C 1.50694 * 109.47069 * 179.97438 * 19 18 16 21 21 C 1.38231 * 120.00408 * 269.72727 * 20 19 18 22 22 C 1.38236 * 120.00212 * 179.76894 * 21 20 19 23 23 C 1.50707 * 119.99850 * 180.23147 * 22 21 20 24 24 C 1.38234 * 119.99825 * 0.50355 * 22 21 20 25 25 C 1.38228 * 120.00023 * 359.74743 * 24 22 21 26 26 C 1.50703 * 120.00156 * 179.97438 * 25 24 22 27 27 C 1.38234 * 119.99764 * 89.99975 * 20 19 18 28 28 H 1.09003 * 109.46963 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47149 * 300.00398 * 1 2 3 30 30 H 1.09000 * 109.47089 * 60.00847 * 1 2 3 31 31 H 1.08994 * 109.47659 * 59.99088 * 5 3 2 32 32 H 1.09006 * 109.46976 * 299.99367 * 5 3 2 33 33 H 1.09002 * 109.47061 * 59.99503 * 6 5 3 34 34 H 1.08999 * 109.47158 * 300.00086 * 6 5 3 35 35 H 0.97000 * 120.00002 * 179.97438 * 11 10 8 36 36 H 1.09002 * 109.46831 * 59.99554 * 18 16 7 37 37 H 1.08998 * 109.46763 * 299.99973 * 18 16 7 38 38 H 1.09001 * 109.46814 * 59.99549 * 19 18 16 39 39 H 1.09001 * 109.46963 * 300.00273 * 19 18 16 40 40 H 1.08005 * 119.99402 * 0.02562 * 21 20 19 41 41 H 1.09000 * 109.47078 * 270.27194 * 23 22 21 42 42 H 1.08998 * 109.46990 * 30.27152 * 23 22 21 43 43 H 1.09000 * 109.46542 * 150.27722 * 23 22 21 44 44 H 1.08004 * 119.99452 * 179.72518 * 24 22 21 45 45 H 1.08992 * 109.47533 * 270.02580 * 26 25 24 46 46 H 1.09003 * 109.46795 * 30.02895 * 26 25 24 47 47 H 1.08998 * 109.46996 * 150.02480 * 26 25 24 48 48 H 1.07998 * 120.00075 * 0.02562 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 7 5.4631 2.8189 -0.0011 8 6 6.1407 2.9869 1.1789 9 1 7.0792 2.4772 1.3400 10 6 5.6200 3.8129 2.1675 11 7 5.9900 3.6542 3.4185 12 14 4.3943 5.1490 1.7183 13 1 3.0134 4.6451 1.9294 14 1 4.6233 6.3395 2.5760 15 1 4.5717 5.5245 0.2925 16 6 6.1429 2.7242 -1.1609 17 8 5.5435 2.5750 -2.2048 18 6 7.6479 2.8026 -1.1609 19 6 8.1657 2.6682 -2.5943 20 6 9.6706 2.7472 -2.5943 21 6 10.2985 3.9707 -2.7338 22 6 11.6789 4.0437 -2.7290 23 6 12.3634 5.3783 -2.8759 24 6 12.4315 2.8919 -2.5950 25 6 11.8036 1.6678 -2.4607 26 6 12.6240 0.4121 -2.3152 27 6 10.4231 1.5954 -2.4603 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8901 31 1 3.9558 0.7809 -0.8907 32 1 3.9564 0.7807 0.8893 33 1 3.6106 3.2365 0.8889 34 1 3.6101 3.2360 -0.8910 35 1 5.6268 4.2311 4.1085 36 1 8.0537 1.9954 -0.5511 37 1 7.9617 3.7619 -0.7493 38 1 7.7598 3.4752 -3.2043 39 1 7.8518 1.7088 -3.0055 40 1 9.7105 4.8701 -2.8425 41 1 12.5339 5.5849 -3.9325 42 1 11.7329 6.1588 -2.4502 43 1 13.3186 5.3563 -2.3513 44 1 13.5100 2.9485 -2.5957 45 1 12.8275 -0.0053 -3.3013 46 1 13.5655 0.6486 -1.8194 47 1 12.0724 -0.3153 -1.7197 48 1 9.9326 0.6389 -2.3561 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871343086.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:33 Heat of formation + Delta-G solvation = -126.797372 kcal Electronic energy + Delta-G solvation = -28273.342589 eV Core-core repulsion = 24292.242331 eV Total energy + Delta-G solvation = -3981.100259 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.68774 -40.87524 -40.29546 -37.78261 -37.02633 -35.34009 -34.32094 -34.22658 -32.82563 -31.05768 -28.80763 -28.11159 -27.49225 -26.94728 -26.34367 -24.49100 -21.98465 -21.55392 -21.26043 -20.79499 -19.11899 -18.42415 -18.16504 -17.81962 -17.54216 -17.11779 -16.84068 -16.73620 -16.08717 -15.86224 -15.40877 -14.96401 -14.87394 -14.75875 -14.49921 -14.34035 -14.10457 -13.95198 -13.81435 -13.72263 -13.58310 -13.57086 -13.28220 -13.17782 -13.05192 -12.88503 -12.74278 -12.67248 -12.17545 -12.02275 -11.99435 -11.90587 -11.81186 -11.72353 -11.69982 -11.65419 -11.19638 -10.52317 -9.84428 -9.42284 -9.38451 -8.56900 -6.17120 0.49629 0.51772 1.03740 1.16640 1.28492 1.37326 1.55907 1.87420 2.13624 2.59567 2.85613 2.94081 3.68156 3.79635 3.87665 3.91473 3.99870 4.04685 4.26390 4.27570 4.28812 4.30554 4.32920 4.38356 4.44544 4.54174 4.56228 4.63864 4.65748 4.74327 4.77676 4.82871 4.85172 4.86991 4.89938 4.93827 5.11416 5.12845 5.22749 5.24044 5.34042 5.39217 5.42985 5.71777 5.72617 5.82680 6.04611 6.19594 6.22073 6.59915 6.91554 7.36035 7.72114 8.56627 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012695 B = 0.002903 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.090139 B = 9643.722092 C =10741.940196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.360 6.360 3 C 0.474 3.526 4 O -0.541 6.541 5 C -0.115 4.115 6 C 0.114 3.886 7 N -0.473 5.473 8 C -0.339 4.339 9 H 0.098 0.902 10 C 0.044 3.956 11 N -0.884 5.884 12 Si 0.905 3.095 13 H -0.273 1.273 14 H -0.279 1.279 15 H -0.270 1.270 16 C 0.479 3.521 17 O -0.612 6.612 18 C -0.101 4.101 19 C -0.053 4.053 20 C -0.078 4.078 21 C -0.141 4.141 22 C -0.090 4.090 23 C -0.112 4.112 24 C -0.135 4.135 25 C -0.089 4.089 26 C -0.111 4.111 27 C -0.137 4.137 28 H 0.138 0.862 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.280 0.720 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.120 0.880 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.141 0.859 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.068 0.932 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.267 -5.376 -8.880 12.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.276 6.276 3 C 0.318 3.682 4 O -0.431 6.431 5 C -0.154 4.154 6 C -0.010 4.010 7 N -0.194 5.194 8 C -0.466 4.466 9 H 0.115 0.885 10 C -0.162 4.162 11 N -0.521 5.521 12 Si 0.732 3.268 13 H -0.199 1.199 14 H -0.205 1.205 15 H -0.195 1.195 16 C 0.271 3.729 17 O -0.498 6.498 18 C -0.141 4.141 19 C -0.091 4.091 20 C -0.078 4.078 21 C -0.159 4.159 22 C -0.090 4.090 23 C -0.168 4.168 24 C -0.153 4.153 25 C -0.089 4.089 26 C -0.167 4.167 27 C -0.155 4.155 28 H 0.156 0.844 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.138 0.862 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.159 0.841 45 H 0.098 0.902 46 H 0.096 0.904 47 H 0.087 0.913 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.731 -5.104 -9.159 12.459 hybrid contribution -1.234 0.986 0.375 1.624 sum 5.497 -4.117 -8.784 11.150 Atomic orbital electron populations 1.23615 0.74568 1.06007 1.02544 1.86511 1.25296 1.32116 1.83645 1.23784 0.92031 0.81402 0.70949 1.90634 1.67898 1.37477 1.47076 1.21622 0.87062 0.99565 1.07113 1.21320 0.82939 0.95249 1.01476 1.43845 1.03948 1.64984 1.06647 1.18986 1.08305 1.28400 0.90956 0.88494 1.25656 0.98095 0.97797 0.94639 1.69794 1.44385 1.37681 1.00193 0.86477 0.80114 0.81144 0.79073 1.19917 1.20513 1.19491 1.21118 0.91292 0.78291 0.82216 1.90537 1.71723 1.55361 1.32144 1.21288 0.90413 1.04348 0.98026 1.20229 0.90500 1.03106 0.95290 1.19913 0.95013 0.93931 0.98974 1.21093 0.94750 0.97288 1.02731 1.20209 0.93295 0.96906 0.98580 1.20820 1.00617 0.92394 1.02971 1.21158 1.00456 0.91383 1.02274 1.20227 0.93727 0.96527 0.98441 1.20818 0.99348 0.93681 1.02894 1.21098 0.93876 0.98095 1.02454 0.84354 0.92091 0.91891 0.86511 0.86099 0.91772 0.91908 0.90969 0.89145 0.89581 0.91589 0.90937 0.86194 0.90179 0.91579 0.90281 0.84135 0.90158 0.90373 0.91317 0.85681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.56 113.37 1.20 1.75 16 2 O -0.36 -10.74 10.57 -51.47 -0.54 -11.28 16 3 C 0.47 17.23 7.96 71.23 0.57 17.80 16 4 O -0.54 -22.58 15.73 21.98 0.35 -22.23 16 5 C -0.12 -4.32 6.09 29.85 0.18 -4.14 16 6 C 0.11 5.12 3.22 86.38 0.28 5.40 16 7 N -0.47 -22.08 2.18 -635.52 -1.39 -23.47 16 8 C -0.34 -16.97 9.05 84.04 0.76 -16.21 16 9 H 0.10 5.02 7.23 -2.91 -0.02 5.00 16 10 C 0.04 2.27 5.26 84.93 0.45 2.72 16 11 N -0.88 -47.71 13.96 21.66 0.30 -47.40 16 12 Si 0.91 42.89 25.05 68.60 1.72 44.61 16 13 H -0.27 -13.00 6.69 99.48 0.67 -12.34 16 14 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 15 H -0.27 -13.13 7.11 99.48 0.71 -12.43 16 16 C 0.48 21.28 7.58 87.66 0.66 21.94 16 17 O -0.61 -28.99 15.67 -3.08 -0.05 -29.04 16 18 C -0.10 -3.79 4.38 29.85 0.13 -3.66 16 19 C -0.05 -1.75 4.63 29.85 0.14 -1.61 16 20 C -0.08 -2.31 5.13 -19.87 -0.10 -2.41 16 21 C -0.14 -3.89 9.36 22.27 0.21 -3.69 16 22 C -0.09 -2.13 5.88 -19.86 -0.12 -2.25 16 23 C -0.11 -1.95 10.01 71.24 0.71 -1.24 16 24 C -0.13 -2.96 9.36 22.27 0.21 -2.75 16 25 C -0.09 -2.06 5.88 -19.87 -0.12 -2.17 16 26 C -0.11 -1.83 10.01 71.24 0.71 -1.12 16 27 C -0.14 -3.67 9.36 22.27 0.21 -3.46 16 28 H 0.14 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.06 1.34 8.13 -2.39 -0.02 1.32 16 30 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 31 H 0.12 4.18 8.14 -2.39 -0.02 4.16 16 32 H 0.12 4.35 8.14 -2.38 -0.02 4.33 16 33 H 0.06 3.07 3.61 -2.39 -0.01 3.06 16 34 H 0.06 2.95 7.58 -2.39 -0.02 2.93 16 35 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 36 H 0.09 3.29 7.67 -2.39 -0.02 3.28 16 37 H 0.09 3.31 8.10 -2.39 -0.02 3.29 16 38 H 0.07 2.24 8.04 -2.39 -0.02 2.22 16 39 H 0.07 2.37 8.04 -2.39 -0.02 2.35 16 40 H 0.12 3.20 8.06 -2.91 -0.02 3.17 16 41 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.07 1.16 8.09 -2.39 -0.02 1.14 16 43 H 0.08 1.14 8.09 -2.39 -0.02 1.12 16 44 H 0.14 2.32 8.06 -2.91 -0.02 2.29 16 45 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.08 1.07 8.09 -2.39 -0.02 1.05 16 47 H 0.07 1.11 8.09 -2.39 -0.02 1.09 16 48 H 0.13 3.10 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -64.31 399.86 7.37 -56.94 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.90 Total: 26.97 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 6.08 Total: 4.91 kcal Atomic # 7 Polarization: -69.79 SS G_CDS: -1.09 Total: -70.87 kcal Atomic # 8 Polarization: -62.31 SS G_CDS: -0.25 Total: -62.55 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.72 Total: 44.61 kcal Total: -64.31 7.37 -56.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871343086.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.856 kcal (2) G-P(sol) polarization free energy of solvation -64.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds