Wall clock time and date at job start Tue Mar 31 2020 17:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 117.00343 * 2 1 4 4 O 1.20821 * 120.00027 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00098 * 180.02562 * 3 2 1 6 6 C 1.52994 * 109.47232 * 179.97438 * 5 3 2 7 7 N 1.46502 * 109.47343 * 185.99600 * 6 5 3 8 8 C 1.37099 * 119.99535 * 277.68640 * 7 6 5 9 9 H 1.07997 * 120.00551 * 35.88283 * 8 7 6 10 10 C 1.38949 * 119.99648 * 215.88569 * 8 7 6 11 11 N 1.31416 * 120.00281 * 21.95822 * 10 8 7 12 12 Si 1.86807 * 119.99915 * 201.96430 * 10 8 7 13 13 H 1.48498 * 109.47199 * 89.99486 * 12 10 8 14 14 H 1.48500 * 109.47099 * 210.00065 * 12 10 8 15 15 H 1.48502 * 109.46594 * 329.99562 * 12 10 8 16 16 C 1.34772 * 120.00205 * 97.68344 * 7 6 5 17 17 O 1.21288 * 119.99752 * 185.52752 * 16 7 6 18 18 C 1.50705 * 119.99893 * 5.24920 * 16 7 6 19 19 H 1.08995 * 109.46905 * 35.75043 * 18 16 7 20 20 C 1.53002 * 109.46851 * 275.74882 * 18 16 7 21 21 C 1.52994 * 109.46937 * 155.75293 * 18 16 7 22 22 C 1.50702 * 109.47288 * 184.99980 * 21 18 16 23 23 C 1.38263 * 120.00011 * 265.00177 * 22 21 18 24 24 C 1.38204 * 119.99671 * 179.97438 * 23 22 21 25 25 C 1.38258 * 120.00531 * 0.02562 * 24 23 22 26 26 C 1.38209 * 119.99863 * 359.97438 * 25 24 23 27 27 C 1.38208 * 120.00150 * 84.72205 * 22 21 18 28 28 C 1.50707 * 120.00082 * 0.02562 * 27 22 21 29 29 H 1.09000 * 109.46785 * 59.99920 * 1 2 3 30 30 H 1.08999 * 109.47237 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47156 * 300.00294 * 1 2 3 32 32 H 1.08999 * 109.47251 * 59.99553 * 5 3 2 33 33 H 1.08997 * 109.46573 * 300.00068 * 5 3 2 34 34 H 1.08997 * 109.47345 * 65.99381 * 6 5 3 35 35 H 1.09002 * 109.46636 * 305.99209 * 6 5 3 36 36 H 0.96998 * 119.99915 * 184.96977 * 11 10 8 37 37 H 1.08994 * 109.47268 * 309.02772 * 20 18 16 38 38 H 1.09003 * 109.46627 * 69.03170 * 20 18 16 39 39 H 1.09000 * 109.46826 * 189.02865 * 20 18 16 40 40 H 1.09006 * 109.47202 * 304.99965 * 21 18 16 41 41 H 1.09007 * 109.47655 * 64.99933 * 21 18 16 42 42 H 1.07998 * 119.99448 * 0.02562 * 23 22 21 43 43 H 1.08010 * 119.99347 * 180.02562 * 24 23 22 44 44 H 1.07997 * 119.99877 * 179.97438 * 25 24 23 45 45 H 1.08003 * 120.00329 * 179.97438 * 26 25 24 46 46 H 1.08992 * 109.47449 * 89.99197 * 28 27 22 47 47 H 1.08997 * 109.47211 * 209.99862 * 28 27 22 48 48 H 1.09001 * 109.46590 * 329.99975 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0003 2.7419 -0.0011 7 7 5.4560 2.8206 -0.1459 8 6 6.2634 2.6644 0.9510 9 1 5.9897 1.9659 1.7279 10 6 7.4338 3.4048 1.0633 11 7 7.5688 4.5264 0.3918 12 14 8.8155 2.8059 2.1686 13 1 9.7332 1.9380 1.3877 14 1 9.5674 3.9723 2.6973 15 1 8.2442 2.0314 3.2995 16 6 6.0014 3.0466 -1.3575 17 8 7.2058 3.0123 -1.4962 18 6 5.1145 3.3357 -2.5411 19 1 4.2558 3.9235 -2.2166 20 6 4.6301 2.0180 -3.1493 21 6 5.9037 4.1218 -3.5898 22 6 4.9855 4.5170 -4.7175 23 6 4.9028 3.7287 -5.8503 24 6 4.0603 4.0909 -6.8843 25 6 3.3006 5.2419 -6.7861 26 6 3.3832 6.0299 -5.6537 27 6 4.2217 5.6645 -4.6169 28 6 4.3075 6.5208 -3.3798 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.9558 0.7808 -0.8908 33 1 3.9563 0.7804 0.8891 34 1 3.7028 3.2091 0.9376 35 1 3.5238 3.2613 -0.8326 36 1 8.4116 5.0060 0.4131 37 1 5.4839 1.3640 -3.3263 38 1 3.9374 1.5332 -2.4613 39 1 4.1239 2.2181 -4.0937 40 1 6.3238 5.0176 -3.1323 41 1 6.7103 3.5003 -3.9789 42 1 5.4960 2.8294 -5.9268 43 1 3.9955 3.4748 -7.7690 44 1 2.6425 5.5251 -7.5943 45 1 2.7900 6.9293 -5.5771 46 1 5.0879 7.2704 -3.5101 47 1 3.3512 7.0169 -3.2142 48 1 4.5455 5.8943 -2.5201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871345714.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:30 Heat of formation + Delta-G solvation = -95.124216 kcal Electronic energy + Delta-G solvation = -29844.586439 eV Core-core repulsion = 25864.859631 eV Total energy + Delta-G solvation = -3979.726808 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.32926 -39.65911 -38.44427 -36.43324 -34.83490 -34.20856 -32.55855 -32.08080 -30.43296 -30.19444 -27.58788 -27.00394 -26.15567 -25.25010 -23.61738 -22.32215 -21.72179 -20.53313 -20.24832 -18.58224 -17.51546 -16.84830 -16.48427 -16.33270 -16.03449 -15.54631 -15.28859 -14.89001 -14.54395 -14.37814 -13.82058 -13.74553 -13.54708 -13.36893 -13.02166 -12.88809 -12.68944 -12.56292 -12.42332 -12.16326 -12.04633 -11.78698 -11.75258 -11.62830 -11.37364 -11.06890 -10.94561 -10.87056 -10.79724 -10.73940 -10.53691 -10.47788 -10.36660 -10.27378 -10.21504 -9.96127 -8.82649 -8.59117 -8.33430 -7.98819 -7.13416 -6.10318 -3.81714 1.54755 1.57005 2.39533 2.84452 3.34870 3.41131 3.44279 3.92357 4.25475 4.39047 4.83683 4.98722 5.01965 5.07695 5.08298 5.14135 5.17725 5.25748 5.32829 5.37817 5.45426 5.48992 5.50015 5.56256 5.65547 5.75974 5.84572 5.87363 5.89415 5.94320 6.06484 6.14286 6.18438 6.23187 6.30458 6.36895 6.42804 6.46173 6.49642 6.56382 6.65433 6.70284 6.80095 6.81798 7.01963 7.22948 7.60791 7.90940 8.22230 9.05272 9.18682 9.66941 10.31252 10.97838 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.007490 B = 0.005109 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3737.346623 B = 5479.129193 C = 8265.328217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.465 3.535 4 O -0.509 6.509 5 C -0.133 4.133 6 C 0.118 3.882 7 N -0.455 5.455 8 C -0.351 4.351 9 H 0.080 0.920 10 C 0.072 3.928 11 N -0.824 5.824 12 Si 0.905 3.095 13 H -0.279 1.279 14 H -0.289 1.289 15 H -0.275 1.275 16 C 0.481 3.519 17 O -0.530 6.530 18 C -0.100 4.100 19 H 0.077 0.923 20 C -0.144 4.144 21 C -0.060 4.060 22 C -0.068 4.068 23 C -0.114 4.114 24 C -0.129 4.129 25 C -0.130 4.130 26 C -0.122 4.122 27 C -0.079 4.079 28 C -0.122 4.122 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.264 0.736 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.120 0.880 43 H 0.116 0.884 44 H 0.115 0.885 45 H 0.117 0.883 46 H 0.069 0.931 47 H 0.062 0.938 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.824 -3.104 -8.781 15.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.281 6.281 3 C 0.308 3.692 4 O -0.396 6.396 5 C -0.172 4.172 6 C -0.007 4.007 7 N -0.176 5.176 8 C -0.477 4.477 9 H 0.098 0.902 10 C -0.139 4.139 11 N -0.458 5.458 12 Si 0.732 3.268 13 H -0.205 1.205 14 H -0.215 1.215 15 H -0.200 1.200 16 C 0.268 3.732 17 O -0.407 6.407 18 C -0.122 4.122 19 H 0.096 0.904 20 C -0.201 4.201 21 C -0.098 4.098 22 C -0.068 4.068 23 C -0.132 4.132 24 C -0.147 4.147 25 C -0.148 4.148 26 C -0.140 4.140 27 C -0.079 4.079 28 C -0.179 4.179 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.138 0.862 43 H 0.134 0.866 44 H 0.133 0.867 45 H 0.135 0.865 46 H 0.088 0.912 47 H 0.081 0.919 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.311 -2.616 -8.823 14.582 hybrid contribution 0.296 -0.199 0.458 0.581 sum -11.015 -2.814 -8.365 14.114 Atomic orbital electron populations 1.23202 0.77054 1.03267 1.02401 1.86546 1.22962 1.34169 1.84391 1.24105 0.92410 0.81003 0.71721 1.90647 1.67360 1.36254 1.45375 1.22137 0.85757 1.03024 1.06292 1.21264 0.85086 0.91487 1.02897 1.43307 1.02071 1.65815 1.06452 1.19003 1.05480 1.22731 1.00487 0.90233 1.25008 0.99309 0.92968 0.96582 1.69907 1.24704 1.11573 1.39628 0.86324 0.82304 0.78327 0.79841 1.20478 1.21489 1.19968 1.19648 0.88370 0.82528 0.82625 1.90507 1.15058 1.51789 1.83335 1.21196 0.98776 0.97033 0.95197 0.90445 1.21900 1.01037 0.96695 1.00512 1.20395 0.95929 1.00967 0.92521 1.19987 0.97042 0.94042 0.95714 1.21079 0.99175 0.99497 0.93425 1.21051 0.97609 0.97341 0.98748 1.21014 1.00109 0.95688 0.97968 1.20988 0.99465 0.99798 0.93787 1.19864 0.96283 0.95623 0.96169 1.20908 1.01961 0.99309 0.95694 0.92071 0.88470 0.92064 0.87576 0.87236 0.90845 0.91073 0.92616 0.92293 0.92830 0.92281 0.90155 0.90535 0.86161 0.86614 0.86697 0.86515 0.91187 0.91908 0.90268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.93 10.56 -39.26 -0.41 -5.34 16 3 C 0.46 7.20 7.96 36.01 0.29 7.49 16 4 O -0.51 -8.97 15.65 -18.75 -0.29 -9.26 16 5 C -0.13 -2.15 5.63 -27.89 -0.16 -2.31 16 6 C 0.12 2.29 4.39 -4.04 -0.02 2.27 16 7 N -0.45 -10.81 2.58 -114.81 -0.30 -11.10 16 8 C -0.35 -9.26 9.29 -14.93 -0.14 -9.39 16 9 H 0.08 2.00 7.92 -52.49 -0.42 1.58 16 10 C 0.07 1.98 4.27 -17.47 -0.07 1.91 16 11 N -0.82 -23.84 11.41 55.50 0.63 -23.20 16 12 Si 0.90 21.56 29.61 -169.99 -5.03 16.53 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 16 C 0.48 11.56 5.96 -10.98 -0.07 11.49 16 17 O -0.53 -14.93 13.60 5.55 0.08 -14.86 16 18 C -0.10 -1.90 1.64 -91.77 -0.15 -2.05 16 19 H 0.08 1.45 5.13 -51.93 -0.27 1.19 16 20 C -0.14 -2.32 8.99 37.16 0.33 -1.99 16 21 C -0.06 -1.10 3.56 -27.89 -0.10 -1.20 16 22 C -0.07 -1.05 4.58 -104.62 -0.48 -1.53 16 23 C -0.11 -1.57 8.12 -39.58 -0.32 -1.90 16 24 C -0.13 -1.59 10.05 -39.59 -0.40 -1.98 16 25 C -0.13 -1.56 10.05 -39.58 -0.40 -1.95 16 26 C -0.12 -1.59 9.70 -39.58 -0.38 -1.97 16 27 C -0.08 -1.17 5.88 -104.62 -0.62 -1.79 16 28 C -0.12 -1.77 9.22 36.01 0.33 -1.44 16 29 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 30 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 32 H 0.11 1.64 6.03 -51.93 -0.31 1.33 16 33 H 0.11 1.72 8.14 -51.93 -0.42 1.29 16 34 H 0.07 1.47 8.10 -51.93 -0.42 1.05 16 35 H 0.07 1.33 5.37 -51.93 -0.28 1.06 16 36 H 0.26 7.41 8.32 -40.82 -0.34 7.07 16 37 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 38 H 0.05 0.82 5.02 -51.93 -0.26 0.56 16 39 H 0.06 0.86 5.99 -51.93 -0.31 0.55 16 40 H 0.08 1.62 7.01 -51.93 -0.36 1.25 16 41 H 0.08 1.44 7.94 -51.93 -0.41 1.03 16 42 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 43 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 44 H 0.11 1.09 8.06 -52.49 -0.42 0.67 16 45 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 46 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 48 H 0.08 1.32 5.47 -51.93 -0.28 1.04 16 LS Contribution 386.00 15.07 5.82 5.82 Total: -1.00 -32.74 386.00 -7.90 -40.64 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -7.11 Total: 5.70 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -1.28 Total: -4.92 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.34 Total: -34.31 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -0.63 Total: -29.47 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.74 -7.90 -40.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871345714.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.480 kcal (2) G-P(sol) polarization free energy of solvation -32.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds