Wall clock time and date at job start Tue Mar 31 2020 17:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 117.00343 * 2 1 4 4 O 1.20821 * 120.00027 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00098 * 180.02562 * 3 2 1 6 6 C 1.52994 * 109.47232 * 179.97438 * 5 3 2 7 7 N 1.46502 * 109.47343 * 185.99600 * 6 5 3 8 8 C 1.37099 * 119.99535 * 277.68640 * 7 6 5 9 9 H 1.07997 * 120.00551 * 35.88283 * 8 7 6 10 10 C 1.38949 * 119.99648 * 215.88569 * 8 7 6 11 11 N 1.31416 * 120.00281 * 21.95822 * 10 8 7 12 12 Si 1.86807 * 119.99915 * 201.96430 * 10 8 7 13 13 H 1.48498 * 109.47199 * 89.99486 * 12 10 8 14 14 H 1.48500 * 109.47099 * 210.00065 * 12 10 8 15 15 H 1.48502 * 109.46594 * 329.99562 * 12 10 8 16 16 C 1.34772 * 120.00205 * 97.68344 * 7 6 5 17 17 O 1.21288 * 119.99752 * 185.52752 * 16 7 6 18 18 C 1.50705 * 119.99893 * 5.24920 * 16 7 6 19 19 H 1.08995 * 109.46905 * 35.75043 * 18 16 7 20 20 C 1.53002 * 109.46851 * 275.74882 * 18 16 7 21 21 C 1.52994 * 109.46937 * 155.75293 * 18 16 7 22 22 C 1.50702 * 109.47288 * 184.99980 * 21 18 16 23 23 C 1.38263 * 120.00011 * 265.00177 * 22 21 18 24 24 C 1.38204 * 119.99671 * 179.97438 * 23 22 21 25 25 C 1.38258 * 120.00531 * 0.02562 * 24 23 22 26 26 C 1.38209 * 119.99863 * 359.97438 * 25 24 23 27 27 C 1.38208 * 120.00150 * 84.72205 * 22 21 18 28 28 C 1.50707 * 120.00082 * 0.02562 * 27 22 21 29 29 H 1.09000 * 109.46785 * 59.99920 * 1 2 3 30 30 H 1.08999 * 109.47237 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47156 * 300.00294 * 1 2 3 32 32 H 1.08999 * 109.47251 * 59.99553 * 5 3 2 33 33 H 1.08997 * 109.46573 * 300.00068 * 5 3 2 34 34 H 1.08997 * 109.47345 * 65.99381 * 6 5 3 35 35 H 1.09002 * 109.46636 * 305.99209 * 6 5 3 36 36 H 0.96998 * 119.99915 * 184.96977 * 11 10 8 37 37 H 1.08994 * 109.47268 * 309.02772 * 20 18 16 38 38 H 1.09003 * 109.46627 * 69.03170 * 20 18 16 39 39 H 1.09000 * 109.46826 * 189.02865 * 20 18 16 40 40 H 1.09006 * 109.47202 * 304.99965 * 21 18 16 41 41 H 1.09007 * 109.47655 * 64.99933 * 21 18 16 42 42 H 1.07998 * 119.99448 * 0.02562 * 23 22 21 43 43 H 1.08010 * 119.99347 * 180.02562 * 24 23 22 44 44 H 1.07997 * 119.99877 * 179.97438 * 25 24 23 45 45 H 1.08003 * 120.00329 * 179.97438 * 26 25 24 46 46 H 1.08992 * 109.47449 * 89.99197 * 28 27 22 47 47 H 1.08997 * 109.47211 * 209.99862 * 28 27 22 48 48 H 1.09001 * 109.46590 * 329.99975 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0003 2.7419 -0.0011 7 7 5.4560 2.8206 -0.1459 8 6 6.2634 2.6644 0.9510 9 1 5.9897 1.9659 1.7279 10 6 7.4338 3.4048 1.0633 11 7 7.5688 4.5264 0.3918 12 14 8.8155 2.8059 2.1686 13 1 9.7332 1.9380 1.3877 14 1 9.5674 3.9723 2.6973 15 1 8.2442 2.0314 3.2995 16 6 6.0014 3.0466 -1.3575 17 8 7.2058 3.0123 -1.4962 18 6 5.1145 3.3357 -2.5411 19 1 4.2558 3.9235 -2.2166 20 6 4.6301 2.0180 -3.1493 21 6 5.9037 4.1218 -3.5898 22 6 4.9855 4.5170 -4.7175 23 6 4.9028 3.7287 -5.8503 24 6 4.0603 4.0909 -6.8843 25 6 3.3006 5.2419 -6.7861 26 6 3.3832 6.0299 -5.6537 27 6 4.2217 5.6645 -4.6169 28 6 4.3075 6.5208 -3.3798 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.9558 0.7808 -0.8908 33 1 3.9563 0.7804 0.8891 34 1 3.7028 3.2091 0.9376 35 1 3.5238 3.2613 -0.8326 36 1 8.4116 5.0060 0.4131 37 1 5.4839 1.3640 -3.3263 38 1 3.9374 1.5332 -2.4613 39 1 4.1239 2.2181 -4.0937 40 1 6.3238 5.0176 -3.1323 41 1 6.7103 3.5003 -3.9789 42 1 5.4960 2.8294 -5.9268 43 1 3.9955 3.4748 -7.7690 44 1 2.6425 5.5251 -7.5943 45 1 2.7900 6.9293 -5.5771 46 1 5.0879 7.2704 -3.5101 47 1 3.3512 7.0169 -3.2142 48 1 4.5455 5.8943 -2.5201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871345714.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:29 Heat of formation + Delta-G solvation = -112.313656 kcal Electronic energy + Delta-G solvation = -29845.331829 eV Core-core repulsion = 25864.859631 eV Total energy + Delta-G solvation = -3980.472198 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.58210 -40.94905 -39.99566 -37.63767 -36.48264 -35.82909 -34.11146 -33.48991 -31.88454 -31.59234 -28.59725 -28.18417 -27.44538 -27.05289 -25.11338 -23.83806 -22.84354 -21.79955 -21.50989 -20.27844 -18.82353 -18.53458 -17.73074 -17.61462 -17.18909 -16.96633 -16.73188 -16.45773 -16.09502 -15.64991 -15.41420 -15.12869 -14.98003 -14.57695 -14.29711 -14.12287 -13.95244 -13.86381 -13.76586 -13.51404 -13.30193 -13.19010 -13.01861 -12.95479 -12.84786 -12.78908 -12.64066 -12.55084 -12.29277 -12.10031 -11.98883 -11.78503 -11.71892 -11.66274 -11.55055 -11.52322 -10.83150 -9.96903 -9.62209 -9.40316 -9.12778 -8.17740 -5.91063 0.49880 0.54332 1.16275 1.41245 1.48474 1.53103 1.71838 2.32841 2.53284 2.88289 3.17062 3.30116 3.77996 3.84802 3.90697 3.98907 4.06677 4.09485 4.12683 4.25987 4.30587 4.32888 4.36008 4.37503 4.44517 4.50075 4.59430 4.67092 4.74973 4.75420 4.82463 4.84615 4.85237 4.91952 4.95432 5.03147 5.04880 5.18794 5.27133 5.33833 5.38560 5.41311 5.52572 5.66155 5.67560 5.87070 6.17715 6.20134 6.72306 7.04425 7.23576 7.70245 8.39355 8.90046 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.007490 B = 0.005109 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3737.346623 B = 5479.129193 C = 8265.328217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.475 3.525 4 O -0.533 6.533 5 C -0.124 4.124 6 C 0.121 3.879 7 N -0.467 5.467 8 C -0.361 4.361 9 H 0.090 0.910 10 C 0.020 3.980 11 N -0.862 5.862 12 Si 0.963 3.037 13 H -0.291 1.291 14 H -0.289 1.289 15 H -0.252 1.252 16 C 0.473 3.527 17 O -0.580 6.580 18 C -0.088 4.088 19 H 0.078 0.922 20 C -0.135 4.135 21 C -0.047 4.047 22 C -0.087 4.087 23 C -0.121 4.121 24 C -0.126 4.126 25 C -0.124 4.124 26 C -0.125 4.125 27 C -0.096 4.096 28 C -0.119 4.119 29 H 0.063 0.937 30 H 0.133 0.867 31 H 0.061 0.939 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.256 0.744 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.046 0.954 41 H 0.061 0.939 42 H 0.127 0.873 43 H 0.146 0.854 44 H 0.148 0.852 45 H 0.138 0.862 46 H 0.068 0.932 47 H 0.081 0.919 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.419 -4.479 -10.333 18.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.319 3.681 4 O -0.423 6.423 5 C -0.163 4.163 6 C -0.003 4.003 7 N -0.188 5.188 8 C -0.488 4.488 9 H 0.108 0.892 10 C -0.186 4.186 11 N -0.498 5.498 12 Si 0.789 3.211 13 H -0.218 1.218 14 H -0.215 1.215 15 H -0.175 1.175 16 C 0.262 3.738 17 O -0.460 6.460 18 C -0.109 4.109 19 H 0.096 0.904 20 C -0.192 4.192 21 C -0.085 4.085 22 C -0.087 4.087 23 C -0.139 4.139 24 C -0.144 4.144 25 C -0.141 4.141 26 C -0.143 4.143 27 C -0.096 4.096 28 C -0.175 4.175 29 H 0.082 0.918 30 H 0.151 0.849 31 H 0.080 0.920 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.145 0.855 43 H 0.164 0.836 44 H 0.166 0.834 45 H 0.156 0.844 46 H 0.086 0.914 47 H 0.100 0.900 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.959 -4.024 -10.348 17.836 hybrid contribution 0.976 0.204 0.891 1.337 sum -12.983 -3.821 -9.457 16.510 Atomic orbital electron populations 1.23572 0.74716 1.05735 1.02618 1.86516 1.25133 1.32586 1.83743 1.23716 0.91863 0.81297 0.71190 1.90647 1.67760 1.37179 1.46683 1.21872 0.86908 1.00367 1.07129 1.21266 0.82519 0.94008 1.02528 1.43513 1.03758 1.65540 1.06014 1.19398 1.05977 1.22223 1.01156 0.89229 1.25859 1.01649 0.93101 0.98010 1.70025 1.24652 1.12985 1.42158 0.85404 0.79347 0.77689 0.78662 1.21826 1.21477 1.17535 1.20503 0.88424 0.81052 0.83830 1.90464 1.17401 1.53763 1.84410 1.21085 0.97622 0.98749 0.93481 0.90409 1.21841 1.01071 0.94758 1.01507 1.20146 0.96100 0.99005 0.93250 1.19769 0.97754 0.95545 0.95649 1.21211 0.99799 0.99602 0.93289 1.21406 0.96380 0.97649 0.98930 1.21439 0.99657 0.94870 0.98161 1.21262 0.98893 1.00711 0.93410 1.19950 0.97213 0.95587 0.96880 1.20843 1.02877 0.98937 0.94855 0.91799 0.84926 0.91990 0.86656 0.86584 0.91897 0.90580 0.93426 0.92809 0.91829 0.90110 0.93529 0.92043 0.85535 0.83628 0.83432 0.84371 0.91374 0.89969 0.93379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.65 16 2 O -0.36 -8.96 10.56 -51.41 -0.54 -9.50 16 3 C 0.48 13.99 7.96 71.24 0.57 14.56 16 4 O -0.53 -18.17 15.65 21.98 0.34 -17.83 16 5 C -0.12 -3.89 5.63 29.85 0.17 -3.72 16 6 C 0.12 4.75 4.39 86.38 0.38 5.13 16 7 N -0.47 -22.84 2.58 -635.55 -1.64 -24.48 16 8 C -0.36 -19.44 9.29 84.04 0.78 -18.66 16 9 H 0.09 4.52 7.92 -2.91 -0.02 4.49 16 10 C 0.02 1.15 4.27 84.93 0.36 1.51 16 11 N -0.86 -52.40 11.41 21.66 0.25 -52.15 16 12 Si 0.96 45.43 29.61 68.60 2.03 47.46 16 13 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 14 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 15 H -0.25 -10.80 7.11 99.48 0.71 -10.09 16 16 C 0.47 23.71 5.96 87.66 0.52 24.23 16 17 O -0.58 -34.48 13.60 -3.05 -0.04 -34.52 16 18 C -0.09 -3.43 1.64 -11.54 -0.02 -3.45 16 19 H 0.08 3.02 5.13 -2.39 -0.01 3.01 16 20 C -0.13 -4.26 8.99 71.98 0.65 -3.61 16 21 C -0.05 -1.81 3.56 29.85 0.11 -1.70 16 22 C -0.09 -2.71 4.58 -19.87 -0.09 -2.80 16 23 C -0.12 -3.15 8.12 22.27 0.18 -2.97 16 24 C -0.13 -2.64 10.05 22.27 0.22 -2.42 16 25 C -0.12 -2.47 10.05 22.27 0.22 -2.25 16 26 C -0.12 -2.91 9.70 22.27 0.22 -2.69 16 27 C -0.10 -2.80 5.88 -19.86 -0.12 -2.91 16 28 C -0.12 -3.54 9.22 71.24 0.66 -2.88 16 29 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16 30 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 32 H 0.12 3.42 6.03 -2.39 -0.01 3.40 16 33 H 0.12 3.50 8.14 -2.39 -0.02 3.48 16 34 H 0.06 2.58 8.10 -2.39 -0.02 2.56 16 35 H 0.08 2.89 5.37 -2.39 -0.01 2.88 16 36 H 0.26 15.24 8.32 -92.71 -0.77 14.47 16 37 H 0.05 1.76 8.12 -2.39 -0.02 1.74 16 38 H 0.06 1.86 5.02 -2.39 -0.01 1.85 16 39 H 0.08 2.22 5.99 -2.39 -0.01 2.20 16 40 H 0.05 2.05 7.01 -2.38 -0.02 2.03 16 41 H 0.06 2.47 7.94 -2.38 -0.02 2.45 16 42 H 0.13 3.06 8.06 -2.91 -0.02 3.03 16 43 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 44 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 45 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 46 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.08 2.04 8.09 -2.39 -0.02 2.02 16 48 H 0.05 1.71 5.47 -2.39 -0.01 1.70 16 Total: -1.00 -74.29 386.00 7.37 -66.92 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.96 Total: 27.07 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 6.00 Total: -2.98 kcal Atomic # 7 Polarization: -75.24 SS G_CDS: -1.39 Total: -76.63 kcal Atomic # 8 Polarization: -61.60 SS G_CDS: -0.24 Total: -61.84 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -74.29 7.37 -66.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871345714.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.396 kcal (2) G-P(sol) polarization free energy of solvation -74.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds