Wall clock time and date at job start Tue Mar 31 2020 19:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34224 * 117.00015 * 2 1 4 4 O 1.20824 * 120.00301 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00118 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.47428 * 59.99827 * 5 3 2 7 7 C 1.52991 * 109.47128 * 299.99789 * 5 3 2 8 8 C 1.53004 * 109.47409 * 175.00335 * 7 5 3 9 9 C 1.52999 * 109.47402 * 175.00258 * 8 7 5 10 10 C 1.53005 * 109.46786 * 295.00013 * 8 7 5 11 11 N 1.46508 * 109.47226 * 179.97438 * 5 3 2 12 12 C 1.34768 * 120.00195 * 204.99848 * 11 5 3 13 13 O 1.21283 * 120.00153 * 359.97438 * 12 11 5 14 14 C 1.50698 * 119.99965 * 180.02562 * 12 11 5 15 15 C 1.50701 * 109.47150 * 180.02562 * 14 12 11 16 16 C 1.37636 * 120.12941 * 264.99955 * 15 14 12 17 17 C 1.38611 * 120.25061 * 180.29574 * 16 15 14 18 18 C 1.38653 * 120.50140 * 359.44427 * 17 16 15 19 19 C 1.37598 * 120.24629 * 0.55396 * 18 17 16 20 20 C 1.40704 * 120.12792 * 85.01908 * 15 14 12 21 21 C 1.41387 * 120.24480 * 359.95991 * 20 15 14 22 22 H 1.08006 * 119.99793 * 334.08076 * 21 20 15 23 23 C 1.39940 * 120.00234 * 154.08580 * 21 20 15 24 24 N 1.30822 * 119.99912 * 343.61546 * 23 21 20 25 25 Si 1.86803 * 120.00192 * 163.62649 * 23 21 20 26 26 H 1.48494 * 109.47516 * 89.99468 * 25 23 21 27 27 H 1.48504 * 109.46852 * 209.99866 * 25 23 21 28 28 H 1.48504 * 109.47021 * 329.99095 * 25 23 21 29 29 H 1.08996 * 109.47715 * 60.00372 * 1 2 3 30 30 H 1.09004 * 109.47205 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47108 * 299.99886 * 1 2 3 32 32 H 1.08999 * 109.47433 * 294.99672 * 7 5 3 33 33 H 1.09002 * 109.47277 * 55.00093 * 7 5 3 34 34 H 1.08994 * 109.47092 * 54.99267 * 8 7 5 35 35 H 1.08998 * 109.47097 * 59.99562 * 9 8 7 36 36 H 1.09002 * 109.47112 * 179.97438 * 9 8 7 37 37 H 1.08998 * 109.46936 * 299.99311 * 9 8 7 38 38 H 1.09008 * 109.46806 * 299.99660 * 10 8 7 39 39 H 1.08996 * 109.47102 * 59.99396 * 10 8 7 40 40 H 1.08997 * 109.47559 * 180.02562 * 10 8 7 41 41 H 0.96999 * 119.99681 * 25.00603 * 11 5 3 42 42 H 1.08990 * 109.47195 * 60.00231 * 14 12 11 43 43 H 1.09001 * 109.47170 * 299.99896 * 14 12 11 44 44 H 1.08004 * 119.87777 * 0.02562 * 16 15 14 45 45 H 1.07999 * 119.75152 * 179.70481 * 17 16 15 46 46 H 1.08004 * 119.87985 * 180.29954 * 18 17 16 47 47 H 1.08002 * 120.12910 * 179.74432 * 19 18 17 48 48 H 0.97001 * 120.00439 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9557 0.7809 -0.8908 7 6 4.1138 0.5811 1.2482 8 6 5.6423 0.5514 1.1865 9 6 6.1942 -0.0292 2.4900 10 6 6.0882 -0.3204 0.0108 11 7 3.9817 2.6798 -0.0011 12 6 5.1869 3.0260 -0.4948 13 8 5.9279 2.1744 -0.9384 14 6 5.6144 4.4711 -0.4948 15 6 6.9911 4.5877 -1.0964 16 6 8.1015 4.6014 -0.2833 17 6 9.3687 4.7147 -0.8336 18 6 9.5339 4.8039 -2.2074 19 6 8.4381 4.7922 -3.0395 20 6 7.1464 4.6834 -2.4916 21 6 6.0131 4.6700 -3.3369 22 1 5.1033 4.1865 -3.0126 23 6 6.0701 5.2829 -4.5936 24 7 7.0286 6.1309 -4.8648 25 14 4.7774 4.8906 -5.8838 26 1 3.6408 5.8366 -5.7494 27 1 5.3735 5.0219 -7.2376 28 1 4.2905 3.5011 -5.6900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.7968 1.1280 2.1362 33 1 3.7321 -0.4388 1.2942 34 1 6.0202 1.5647 1.0512 35 1 5.8162 -1.0426 2.6252 36 1 7.2832 -0.0508 2.4457 37 1 5.8766 0.5919 3.3275 38 1 5.7102 -1.3339 0.1461 39 1 5.6949 0.0931 -0.9178 40 1 7.1771 -0.3421 -0.0331 41 1 3.3892 3.3608 0.3541 42 1 5.6320 4.8447 0.5289 43 1 4.9099 5.0584 -1.0838 44 1 7.9849 4.5279 0.7879 45 1 10.2341 4.7294 -0.1877 46 1 10.5262 4.8870 -2.6257 47 1 8.5688 4.8660 -4.1090 48 1 7.0685 6.5556 -5.7360 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881746937.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:12 Heat of formation + Delta-G solvation = -115.828172 kcal Electronic energy + Delta-G solvation = -29817.349908 eV Core-core repulsion = 25836.725309 eV Total energy + Delta-G solvation = -3980.624599 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.94687 -39.44571 -37.56297 -36.70209 -36.17136 -33.87136 -33.58933 -31.73820 -30.04095 -29.40481 -27.78648 -26.89047 -26.63896 -25.05381 -24.46317 -21.37123 -20.88978 -20.31560 -19.88358 -19.38913 -17.78860 -17.29995 -17.06950 -16.74254 -16.03692 -15.57202 -15.40791 -15.20113 -14.43652 -14.27345 -13.99845 -13.81649 -13.57874 -13.36557 -13.19709 -13.05065 -12.59608 -12.53539 -12.43152 -12.12494 -11.92193 -11.68514 -11.63557 -11.53947 -11.14241 -11.04978 -11.02915 -10.99629 -10.94718 -10.68709 -10.58736 -10.40073 -10.36947 -10.18434 -9.45265 -9.34703 -9.13933 -9.11028 -8.81228 -7.28179 -7.26112 -6.70943 -4.31155 1.97341 2.31565 2.82468 3.01696 3.08919 3.14257 3.29082 3.30149 3.62921 3.96531 4.43605 4.69291 4.81923 4.86088 4.94061 4.96990 5.09390 5.22987 5.27998 5.50343 5.55174 5.67950 5.80334 5.81675 5.87005 5.95620 6.04725 6.09460 6.12094 6.14473 6.19439 6.31462 6.41995 6.47075 6.54002 6.61691 6.66588 6.81237 6.83890 7.11936 7.32676 7.45376 7.49699 7.66834 7.86098 7.96857 8.10372 8.16483 8.34766 8.68010 8.81537 8.94959 9.04752 10.23222 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010164 B = 0.004462 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.222645 B = 6273.372965 C = 8250.841735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.354 6.354 3 C 0.460 3.540 4 O -0.502 6.502 5 C 0.154 3.846 6 H 0.128 0.872 7 C -0.117 4.117 8 C -0.094 4.094 9 C -0.145 4.145 10 C -0.139 4.139 11 N -0.731 5.731 12 C 0.518 3.482 13 O -0.504 6.504 14 C -0.069 4.069 15 C -0.180 4.180 16 C -0.079 4.079 17 C -0.240 4.240 18 C -0.107 4.107 19 C -0.159 4.159 20 C 0.131 3.869 21 C -0.456 4.456 22 H 0.074 0.926 23 C 0.078 3.922 24 N -0.795 5.795 25 Si 0.900 3.100 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.262 1.262 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.048 0.952 38 H 0.038 0.962 39 H 0.075 0.925 40 H 0.051 0.949 41 H 0.405 0.595 42 H 0.076 0.924 43 H 0.097 0.903 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.116 0.884 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.617 -10.033 10.045 17.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.270 6.270 3 C 0.302 3.698 4 O -0.389 6.389 5 C 0.048 3.952 6 H 0.145 0.855 7 C -0.156 4.156 8 C -0.112 4.112 9 C -0.202 4.202 10 C -0.197 4.197 11 N -0.389 5.389 12 C 0.307 3.693 13 O -0.377 6.377 14 C -0.109 4.109 15 C -0.181 4.181 16 C -0.098 4.098 17 C -0.259 4.259 18 C -0.125 4.125 19 C -0.179 4.179 20 C 0.128 3.872 21 C -0.486 4.486 22 H 0.092 0.908 23 C -0.139 4.139 24 N -0.421 5.421 25 Si 0.725 3.275 26 H -0.196 1.196 27 H -0.201 1.201 28 H -0.186 1.186 29 H 0.082 0.918 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.241 0.759 42 H 0.095 0.905 43 H 0.115 0.885 44 H 0.102 0.898 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.134 0.866 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.214 -10.200 9.509 16.714 hybrid contribution -1.172 0.301 -0.516 1.315 sum -10.386 -9.899 8.993 16.933 Atomic orbital electron populations 1.23295 0.76169 1.03768 1.02669 1.86504 1.23496 1.33004 1.83982 1.23962 0.92117 0.81599 0.72110 1.90666 1.66882 1.36288 1.45030 1.20470 0.85414 0.86360 1.02990 0.85468 1.22042 0.97404 1.00580 0.95579 1.21158 0.92905 1.01948 0.95196 1.21838 1.01057 1.00261 0.97054 1.21842 1.01378 0.97369 0.99062 1.46071 1.19995 1.06556 1.66304 1.21273 0.79685 0.92501 0.75853 1.90691 1.52250 1.51227 1.43544 1.20256 0.98182 0.91328 1.01103 1.19005 0.91044 1.14543 0.93554 1.20276 0.92828 1.00100 0.96550 1.20288 0.95430 1.15579 0.94608 1.20668 0.97070 1.01069 0.93704 1.21282 0.91711 1.05702 0.99163 1.17311 0.92790 0.87016 0.90049 1.19462 0.98884 1.31136 0.99087 0.90814 1.25857 0.96174 0.92911 0.98997 1.69817 1.30259 1.19363 1.22612 0.86440 0.81062 0.80179 0.79837 1.19551 1.20098 1.18605 0.91754 0.87966 0.91843 0.91496 0.90182 0.89615 0.93174 0.92613 0.93285 0.94338 0.90647 0.92987 0.75937 0.90543 0.88463 0.89834 0.89773 0.89694 0.86632 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.35 -3.94 10.37 -39.24 -0.41 -4.35 16 3 C 0.46 5.99 7.32 36.01 0.26 6.26 16 4 O -0.50 -7.53 15.59 -18.75 -0.29 -7.83 16 5 C 0.15 2.06 2.68 -69.08 -0.19 1.87 16 6 H 0.13 1.86 5.92 -51.93 -0.31 1.55 16 7 C -0.12 -1.35 4.32 -26.73 -0.12 -1.47 16 8 C -0.09 -1.25 2.38 -90.62 -0.22 -1.46 16 9 C -0.14 -1.64 9.19 37.16 0.34 -1.29 16 10 C -0.14 -1.99 8.03 37.16 0.30 -1.69 16 11 N -0.73 -10.77 4.90 -54.93 -0.27 -11.04 16 12 C 0.52 9.41 6.02 -10.99 -0.07 9.35 16 13 O -0.50 -10.52 10.99 5.55 0.06 -10.46 16 14 C -0.07 -1.32 5.18 -29.04 -0.15 -1.47 16 15 C -0.18 -4.19 4.43 -103.91 -0.46 -4.65 16 16 C -0.08 -1.78 9.66 -39.66 -0.38 -2.16 16 17 C -0.24 -5.50 10.05 -39.29 -0.39 -5.89 16 18 C -0.11 -2.58 10.02 -39.66 -0.40 -2.98 16 19 C -0.16 -4.21 8.68 -38.87 -0.34 -4.55 16 20 C 0.13 3.43 5.56 -106.83 -0.59 2.84 16 21 C -0.46 -11.90 8.14 -37.75 -0.31 -12.21 16 22 H 0.07 1.88 6.68 -52.48 -0.35 1.53 16 23 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 24 N -0.79 -20.55 10.97 55.55 0.61 -19.94 16 25 Si 0.90 19.07 29.59 -169.99 -5.03 14.04 16 26 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 27 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 28 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 29 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.82 8.00 -51.93 -0.42 0.40 16 34 H 0.09 1.38 5.19 -51.93 -0.27 1.11 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.04 0.46 8.14 -51.92 -0.42 0.04 16 39 H 0.07 1.23 4.76 -51.93 -0.25 0.99 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.40 5.41 7.79 -40.82 -0.32 5.10 16 42 H 0.08 1.23 8.05 -51.93 -0.42 0.81 16 43 H 0.10 1.88 7.06 -51.93 -0.37 1.52 16 44 H 0.08 1.65 8.06 -52.48 -0.42 1.23 16 45 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 46 H 0.08 1.85 8.06 -52.48 -0.42 1.42 16 47 H 0.12 3.16 6.22 -52.49 -0.33 2.83 16 48 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 LS Contribution 386.53 15.07 5.82 5.82 Total: -1.00 -29.90 386.53 -8.46 -38.36 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -7.23 Total: 11.68 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -1.73 Total: -16.30 kcal Atomic # 7 Polarization: -31.31 SS G_CDS: 0.34 Total: -30.97 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.64 Total: -22.63 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.90 -8.46 -38.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881746937.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.469 kcal (2) G-P(sol) polarization free energy of solvation -29.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds