Wall clock time and date at job start Tue Mar 31 2020 19:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34224 * 117.00015 * 2 1 4 4 O 1.20824 * 120.00301 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00118 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.47428 * 59.99827 * 5 3 2 7 7 C 1.52991 * 109.47128 * 299.99789 * 5 3 2 8 8 C 1.53004 * 109.47409 * 175.00335 * 7 5 3 9 9 C 1.52999 * 109.47402 * 175.00258 * 8 7 5 10 10 C 1.53005 * 109.46786 * 295.00013 * 8 7 5 11 11 N 1.46508 * 109.47226 * 179.97438 * 5 3 2 12 12 C 1.34768 * 120.00195 * 204.99848 * 11 5 3 13 13 O 1.21283 * 120.00153 * 359.97438 * 12 11 5 14 14 C 1.50698 * 119.99965 * 180.02562 * 12 11 5 15 15 C 1.50701 * 109.47150 * 180.02562 * 14 12 11 16 16 C 1.37636 * 120.12941 * 264.99955 * 15 14 12 17 17 C 1.38611 * 120.25061 * 180.29574 * 16 15 14 18 18 C 1.38653 * 120.50140 * 359.44427 * 17 16 15 19 19 C 1.37598 * 120.24629 * 0.55396 * 18 17 16 20 20 C 1.40704 * 120.12792 * 85.01908 * 15 14 12 21 21 C 1.41387 * 120.24480 * 359.95991 * 20 15 14 22 22 H 1.08006 * 119.99793 * 334.08076 * 21 20 15 23 23 C 1.39940 * 120.00234 * 154.08580 * 21 20 15 24 24 N 1.30822 * 119.99912 * 343.61546 * 23 21 20 25 25 Si 1.86803 * 120.00192 * 163.62649 * 23 21 20 26 26 H 1.48494 * 109.47516 * 89.99468 * 25 23 21 27 27 H 1.48504 * 109.46852 * 209.99866 * 25 23 21 28 28 H 1.48504 * 109.47021 * 329.99095 * 25 23 21 29 29 H 1.08996 * 109.47715 * 60.00372 * 1 2 3 30 30 H 1.09004 * 109.47205 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47108 * 299.99886 * 1 2 3 32 32 H 1.08999 * 109.47433 * 294.99672 * 7 5 3 33 33 H 1.09002 * 109.47277 * 55.00093 * 7 5 3 34 34 H 1.08994 * 109.47092 * 54.99267 * 8 7 5 35 35 H 1.08998 * 109.47097 * 59.99562 * 9 8 7 36 36 H 1.09002 * 109.47112 * 179.97438 * 9 8 7 37 37 H 1.08998 * 109.46936 * 299.99311 * 9 8 7 38 38 H 1.09008 * 109.46806 * 299.99660 * 10 8 7 39 39 H 1.08996 * 109.47102 * 59.99396 * 10 8 7 40 40 H 1.08997 * 109.47559 * 180.02562 * 10 8 7 41 41 H 0.96999 * 119.99681 * 25.00603 * 11 5 3 42 42 H 1.08990 * 109.47195 * 60.00231 * 14 12 11 43 43 H 1.09001 * 109.47170 * 299.99896 * 14 12 11 44 44 H 1.08004 * 119.87777 * 0.02562 * 16 15 14 45 45 H 1.07999 * 119.75152 * 179.70481 * 17 16 15 46 46 H 1.08004 * 119.87985 * 180.29954 * 18 17 16 47 47 H 1.08002 * 120.12910 * 179.74432 * 19 18 17 48 48 H 0.97001 * 120.00439 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9557 0.7809 -0.8908 7 6 4.1138 0.5811 1.2482 8 6 5.6423 0.5514 1.1865 9 6 6.1942 -0.0292 2.4900 10 6 6.0882 -0.3204 0.0108 11 7 3.9817 2.6798 -0.0011 12 6 5.1869 3.0260 -0.4948 13 8 5.9279 2.1744 -0.9384 14 6 5.6144 4.4711 -0.4948 15 6 6.9911 4.5877 -1.0964 16 6 8.1015 4.6014 -0.2833 17 6 9.3687 4.7147 -0.8336 18 6 9.5339 4.8039 -2.2074 19 6 8.4381 4.7922 -3.0395 20 6 7.1464 4.6834 -2.4916 21 6 6.0131 4.6700 -3.3369 22 1 5.1033 4.1865 -3.0126 23 6 6.0701 5.2829 -4.5936 24 7 7.0286 6.1309 -4.8648 25 14 4.7774 4.8906 -5.8838 26 1 3.6408 5.8366 -5.7494 27 1 5.3735 5.0219 -7.2376 28 1 4.2905 3.5011 -5.6900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.7968 1.1280 2.1362 33 1 3.7321 -0.4388 1.2942 34 1 6.0202 1.5647 1.0512 35 1 5.8162 -1.0426 2.6252 36 1 7.2832 -0.0508 2.4457 37 1 5.8766 0.5919 3.3275 38 1 5.7102 -1.3339 0.1461 39 1 5.6949 0.0931 -0.9178 40 1 7.1771 -0.3421 -0.0331 41 1 3.3892 3.3608 0.3541 42 1 5.6320 4.8447 0.5289 43 1 4.9099 5.0584 -1.0838 44 1 7.9849 4.5279 0.7879 45 1 10.2341 4.7294 -0.1877 46 1 10.5262 4.8870 -2.6257 47 1 8.5688 4.8660 -4.1090 48 1 7.0685 6.5556 -5.7360 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881746937.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:11 Heat of formation + Delta-G solvation = -131.619552 kcal Electronic energy + Delta-G solvation = -29818.034673 eV Core-core repulsion = 25836.725309 eV Total energy + Delta-G solvation = -3981.309364 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.00867 -40.76404 -39.25722 -37.73612 -37.34431 -35.48063 -35.09169 -33.39951 -31.38483 -31.13004 -28.68032 -28.15610 -27.91059 -26.83434 -25.55618 -22.81180 -22.58282 -21.61382 -21.10077 -20.79200 -19.11717 -18.84595 -18.28060 -17.76639 -17.31211 -17.19139 -16.70790 -16.41373 -16.13144 -15.71469 -15.34214 -15.00466 -14.96205 -14.57582 -14.46167 -14.34052 -14.26186 -13.66238 -13.51826 -13.37942 -13.28005 -13.00389 -12.88877 -12.85692 -12.74578 -12.67764 -12.52347 -12.46846 -12.13013 -12.08289 -11.86425 -11.67287 -11.42740 -11.30057 -11.23109 -11.17935 -11.01167 -10.60318 -10.06529 -9.18960 -9.12763 -8.58573 -6.27020 0.95485 1.00347 1.14364 1.34377 1.40984 1.45126 1.53164 1.89164 2.19220 2.39735 2.80340 3.49421 3.78064 3.83065 3.94851 4.10148 4.16034 4.28532 4.29221 4.32611 4.43544 4.50210 4.54115 4.64618 4.70035 4.74322 4.79163 4.83992 4.85476 4.89344 4.95071 5.08988 5.12408 5.15884 5.20591 5.22296 5.39305 5.40590 5.45069 5.57890 5.58410 5.68156 5.80351 6.07154 6.19688 6.25393 6.45236 6.50816 6.61406 6.77443 7.01873 7.14437 7.44279 8.37777 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010164 B = 0.004462 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.222645 B = 6273.372965 C = 8250.841735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.468 3.532 4 O -0.525 6.525 5 C 0.152 3.848 6 H 0.113 0.887 7 C -0.107 4.107 8 C -0.093 4.093 9 C -0.140 4.140 10 C -0.135 4.135 11 N -0.719 5.719 12 C 0.523 3.477 13 O -0.536 6.536 14 C -0.070 4.070 15 C -0.180 4.180 16 C -0.087 4.087 17 C -0.241 4.241 18 C -0.117 4.117 19 C -0.193 4.193 20 C 0.100 3.900 21 C -0.482 4.482 22 H 0.069 0.931 23 C 0.038 3.962 24 N -0.826 5.826 25 Si 0.965 3.035 26 H -0.259 1.259 27 H -0.267 1.267 28 H -0.269 1.269 29 H 0.058 0.942 30 H 0.136 0.864 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.046 0.954 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.050 0.950 40 H 0.032 0.968 41 H 0.413 0.587 42 H 0.110 0.890 43 H 0.091 0.909 44 H 0.116 0.884 45 H 0.113 0.887 46 H 0.102 0.898 47 H 0.094 0.906 48 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.250 -11.251 12.036 19.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C 0.311 3.689 4 O -0.414 6.414 5 C 0.046 3.954 6 H 0.131 0.869 7 C -0.146 4.146 8 C -0.111 4.111 9 C -0.197 4.197 10 C -0.192 4.192 11 N -0.376 5.376 12 C 0.312 3.688 13 O -0.411 6.411 14 C -0.109 4.109 15 C -0.182 4.182 16 C -0.105 4.105 17 C -0.260 4.260 18 C -0.136 4.136 19 C -0.212 4.212 20 C 0.097 3.903 21 C -0.512 4.512 22 H 0.088 0.912 23 C -0.176 4.176 24 N -0.453 5.453 25 Si 0.787 3.213 26 H -0.184 1.184 27 H -0.191 1.191 28 H -0.193 1.193 29 H 0.077 0.923 30 H 0.154 0.846 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.119 0.881 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.051 0.949 41 H 0.250 0.750 42 H 0.128 0.872 43 H 0.109 0.891 44 H 0.134 0.866 45 H 0.131 0.869 46 H 0.121 0.879 47 H 0.112 0.888 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.872 -11.422 11.524 19.531 hybrid contribution -0.649 0.626 -1.036 1.373 sum -11.521 -10.796 10.488 18.955 Atomic orbital electron populations 1.23635 0.74185 1.06049 1.02726 1.86488 1.25339 1.31641 1.83351 1.23744 0.91739 0.81876 0.71579 1.90661 1.67283 1.37121 1.46318 1.20537 0.86103 0.85221 1.03546 0.86918 1.21988 0.95950 1.01717 0.94906 1.21084 0.94130 1.00154 0.95743 1.21787 1.00479 1.01362 0.96069 1.21772 1.00046 0.98795 0.98575 1.45819 1.18895 1.07744 1.65120 1.20937 0.80428 0.91684 0.75782 1.90698 1.53463 1.51826 1.45144 1.20258 0.95803 0.92319 1.02562 1.19436 0.93535 1.12417 0.92804 1.20690 0.92416 0.99172 0.98241 1.20693 0.96867 1.14032 0.94372 1.20926 0.97323 1.00835 0.94470 1.21277 0.92999 1.08354 0.98603 1.17668 0.92819 0.88042 0.91725 1.19596 0.98927 1.32265 1.00380 0.91238 1.26586 0.98134 0.92390 1.00485 1.69877 1.31855 1.20196 1.23349 0.85458 0.78786 0.79506 0.77529 1.18375 1.19142 1.19301 0.92277 0.84623 0.91269 0.90068 0.88082 0.92533 0.91400 0.93491 0.92162 0.92025 0.93151 0.94879 0.74988 0.87172 0.89086 0.86597 0.86864 0.87939 0.88751 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.56 16 2 O -0.35 -7.03 10.37 -51.36 -0.53 -7.56 16 3 C 0.47 11.41 7.32 71.24 0.52 11.93 16 4 O -0.52 -15.03 15.59 21.97 0.34 -14.69 16 5 C 0.15 3.89 2.68 44.24 0.12 4.01 16 6 H 0.11 3.29 5.92 -2.39 -0.01 3.28 16 7 C -0.11 -2.22 4.32 30.59 0.13 -2.09 16 8 C -0.09 -2.34 2.38 -10.79 -0.03 -2.36 16 9 C -0.14 -2.82 9.19 71.98 0.66 -2.16 16 10 C -0.13 -3.81 8.03 71.98 0.58 -3.23 16 11 N -0.72 -20.58 4.90 -446.10 -2.19 -22.77 16 12 C 0.52 18.97 6.02 87.66 0.53 19.49 16 13 O -0.54 -22.82 10.99 -3.04 -0.03 -22.85 16 14 C -0.07 -2.64 5.18 29.10 0.15 -2.48 16 15 C -0.18 -8.46 4.43 -19.40 -0.09 -8.54 16 16 C -0.09 -3.82 9.66 22.22 0.21 -3.60 16 17 C -0.24 -10.79 10.05 22.46 0.23 -10.56 16 18 C -0.12 -5.74 10.02 22.22 0.22 -5.52 16 19 C -0.19 -10.62 8.68 22.73 0.20 -10.43 16 20 C 0.10 5.41 5.56 -21.29 -0.12 5.29 16 21 C -0.48 -26.08 8.14 23.46 0.19 -25.89 16 22 H 0.07 3.68 6.68 -2.91 -0.02 3.66 16 23 C 0.04 1.99 5.16 85.26 0.44 2.43 16 24 N -0.83 -44.26 10.97 21.82 0.24 -44.03 16 25 Si 0.97 40.02 29.59 68.60 2.03 42.05 16 26 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 27 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 28 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 29 H 0.06 0.88 8.13 -2.39 -0.02 0.86 16 30 H 0.14 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.07 0.88 8.13 -2.38 -0.02 0.86 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.10 1.71 8.00 -2.39 -0.02 1.70 16 34 H 0.06 1.78 5.19 -2.39 -0.01 1.77 16 35 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.05 1.68 4.76 -2.39 -0.01 1.67 16 40 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.41 10.54 7.79 -92.71 -0.72 9.81 16 42 H 0.11 3.33 8.05 -2.39 -0.02 3.31 16 43 H 0.09 3.55 7.06 -2.39 -0.02 3.53 16 44 H 0.12 4.27 8.06 -2.91 -0.02 4.24 16 45 H 0.11 4.35 8.06 -2.91 -0.02 4.33 16 46 H 0.10 4.49 8.06 -2.91 -0.02 4.47 16 47 H 0.09 5.48 6.22 -2.91 -0.02 5.46 16 48 H 0.28 13.91 8.30 -92.71 -0.77 13.14 16 Total: -1.00 -67.18 386.53 5.26 -61.92 By element: Atomic # 1 Polarization: 39.83 SS G_CDS: 0.25 Total: 40.08 kcal Atomic # 6 Polarization: -37.30 SS G_CDS: 5.15 Total: -32.15 kcal Atomic # 7 Polarization: -64.85 SS G_CDS: -1.95 Total: -66.80 kcal Atomic # 8 Polarization: -44.88 SS G_CDS: -0.22 Total: -45.10 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Total: -67.18 5.26 -61.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881746937.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.696 kcal (2) G-P(sol) polarization free energy of solvation -67.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds